|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
517-861 |
1.55e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 72.01 E-value: 1.55e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 517 KQKADTIQELQRELQMLQKESSMAEKEQTSNRKRVEELSLELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKHQ 596
Cdd:TIGR02168 687 EELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEEL 766
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 597 HREqgsikcklEEDLQEATKLLEDKREQlkkskeheklmegeLEALRQEFKKKDKTLKENSRKLEEENENLRAELQCCST 676
Cdd:TIGR02168 767 EER--------LEEAEEELAEAEAEIEE--------------LEAQIEQLKEELKALREALDELRAELTLLNEEAANLRE 824
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 677 QLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQLDKA-LQKEKHYLQTTITKEAYDALSRKSAACQDDLTQALEKLN 755
Cdd:TIGR02168 825 RLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELeELIEELESELEALLNERASLEEALALLRSELEELSEELR 904
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 756 HVTSETKSLQQSLTQTQEKKAQLEEEIIAYEERMKKLNTELRKlrgfHQESELEVHAFDKKLEEMSCQVLQWQ-KQHQND 834
Cdd:TIGR02168 905 ELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSE----EYSLTLEEAEALENKIEDDEEEARRRlKRLENK 980
|
330 340 350
....*....|....*....|....*....|....
gi 767990636 835 LKM-----LAAKEE--QLREFQEEMAALKENLLE 861
Cdd:TIGR02168 981 IKElgpvnLAAIEEyeELKERYDFLTAQKEDLTE 1014
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
300-865 |
3.13e-12 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 70.86 E-value: 3.13e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 300 DIKKILKHLQEQKDSQCLHVEEYQNLVKDLRVELEAVSEQKRNIMKDMMKLELDLHGLREETSahierkdkditilqcRL 379
Cdd:PRK03918 169 EVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVK---------------EL 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 380 QELQLEFTETQKLTLKKDKFLQEKDEMLQELEKKLTQVQNSLLkkekelekqqcmatELEMTVKEAKQDKSKEAECKALQ 459
Cdd:PRK03918 234 EELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIE--------------ELEEKVKELKELKEKAEEYIKLS 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 460 AEVQKLKNSL-----EEAKQQERLAGEAPAAQQAAQCKEEAALAGCHLEDTQRKLQKgLLLDKQKADTIQELQRELQMLQ 534
Cdd:PRK03918 300 EFYEEYLDELreiekRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEE-LEERHELYEEAKAKKEELERLK 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 535 KESSMAEKEQTSN-----RKRVEELSLELSEALRKLENSDKEKRQLQKTVAEqdmkmndmLDRIKHQhreqgSIKCKLEE 609
Cdd:PRK03918 379 KRLTGLTPEKLEKeleelEKAKEEIEEEISKITARIGELKKEIKELKKAIEE--------LKKAKGK-----CPVCGREL 445
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 610 DLQEATKLLEDKREQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSR-----KLEEENENLRAELQCCSTQ-LESSLN 683
Cdd:PRK03918 446 TEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESEliklkELAEQLKELEEKLKKYNLEeLEKKAE 525
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 684 KYNTSQQVIQDLNKEIALQKESLMSLQAQLDK--ALQKEKHYLQTTItKEAYDALSRKSAACQDDLT---QALEKLNHVT 758
Cdd:PRK03918 526 EYEKLKEKLIKLKGEIKSLKKELEKLEELKKKlaELEKKLDELEEEL-AELLKELEELGFESVEELEerlKELEPFYNEY 604
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 759 SETKSLQQSLTQTQEKKAQLEEEIIAYEERMKKLNTELRKLRGfhQESELEVHAFDKKLEEMSCQVLQWQKQhqndLKML 838
Cdd:PRK03918 605 LELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRK--ELEELEKKYSEEEYEELREEYLELSRE----LAGL 678
|
570 580
....*....|....*....|....*..
gi 767990636 839 AAKEEQLREFQEEMAALKENLLEDDKE 865
Cdd:PRK03918 679 RAELEELEKRREEIKKTLEKLKEELEE 705
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
517-798 |
5.99e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 70.10 E-value: 5.99e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 517 KQKADTIQELQRELQMLQKESSMAEKEQTSNRKRVEELSLELSEALRKLENSDKEKRQLQKTVAEQDMKMN--------- 587
Cdd:TIGR02169 705 DELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHkleealndl 784
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 588 -------------DMLDRIKHQHREQGSIKCKLEEDLQEatklLEDKREQLKKSKEHEKLMEGELEALRQEFKKKDKTLK 654
Cdd:TIGR02169 785 earlshsripeiqAELSKLEEEVSRIEARLREIEQKLNR----LTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLN 860
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 655 ENSRKLEEENENLRAELQccstQLESSL-----------NKYNTSQQVIQDLNKEIALQKESLMSLQAQLDKALQKEKHY 723
Cdd:TIGR02169 861 GKKEELEEELEELEAALR----DLESRLgdlkkerdeleAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEI 936
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 724 LQTTITKEAY---DALSRKSAACQDDLTQALEKLNHVT----SETKSLQQSLTQTQEKKAQLEEEIIAYEERMKKLNTEL 796
Cdd:TIGR02169 937 EDPKGEDEEIpeeELSLEDVQAELQRVEEEIRALEPVNmlaiQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKK 1016
|
..
gi 767990636 797 RK 798
Cdd:TIGR02169 1017 RE 1018
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
323-865 |
1.14e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.20 E-value: 1.14e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 323 QNL--VKDLRVELE----------AVSEQKRNIMKDMMKLELDLHGLR-EETSAHIERKDKDITILQCRLQELQLEFTET 389
Cdd:COG1196 186 ENLerLEDILGELErqleplerqaEKAERYRELKEELKELEAELLLLKlRELEAELEELEAELEELEAELEELEAELAEL 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 390 QKLTLKKDKFLQEKDEMLQELEKKLTQVQNSLLKKEKELEKQQCMATELEMTVKEAKQD-KSKEAECKALQAEVQKLKNS 468
Cdd:COG1196 266 EAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEElAELEEELEELEEELEELEEE 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 469 LEEAKQQERLAGEAPAAQQAAQCKEEAALAGC---------HLEDTQRKLQKGLLLDKQKADTIQELQRELQMLQKESSM 539
Cdd:COG1196 346 LEEAEEELEEAEAELAEAEEALLEAEAELAEAeeeleelaeELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEE 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 540 AEKEQTSNRKRVEELSLELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKHQHREQGSIKcKLEEDLQEATKLLE 619
Cdd:COG1196 426 LEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAA-ARLLLLLEAEADYE 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 620 DKREQLKKS--------------------KEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENLRAELQCCSTQLE 679
Cdd:COG1196 505 GFLEGVKAAlllaglrglagavavligveAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRA 584
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 680 SSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQLDKALqkekhyLQTTITKEAYDALSRKSAACQDDLTQALEKLNHVTS 759
Cdd:COG1196 585 RAALAAALARGAIGAAVDLVASDLREADARYYVLGDTL------LGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSA 658
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 760 ETKSLQQSLTQTQEKKAQLEEEIIAYEERMKKLNTELRKLRgfHQESELEVHAFDKKLEEMSCQVLQWQKQHQNDLKMLA 839
Cdd:COG1196 659 GGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEAL--LAEEEEERELAEAEEERLEEELEEEALEEQLEAEREE 736
|
570 580
....*....|....*....|....*.
gi 767990636 840 AKEEQLREFQEEMAALKENLLEDDKE 865
Cdd:COG1196 737 LLEELLEEEELLEEEALEELPEPPDL 762
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
148-862 |
1.66e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.93 E-value: 1.66e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 148 ENTGEKLHLAQEQLALAGDKIASLERSLNLYRDKYQSSLSNIELLEcQVKMLQGELGGIMGQEPENKGDHSKVRIYTspc 227
Cdd:TIGR02168 175 KETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKA-ELRELELALLVLRLEELREELEELQEELKE--- 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 228 MIQEHQETQKRLSEVWQKVSQQDDLIQELRNKLACSNALV---------LEREKALIK-----LQADFASCTATHRYPPS 293
Cdd:TIGR02168 251 AEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELyalaneisrLEQQKQILRerlanLERQLEELEAQLEELES 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 294 SSEECED----IKKILKHLQEQKDSQCLHVEEYQNLVKDLR---VELEAVSEQKRNIMKDMMKLELDLHGLREETSAHIE 366
Cdd:TIGR02168 331 KLDELAEelaeLEEKLEELKEELESLEAELEELEAELEELEsrlEELEEQLETLRSKVAQLELQIASLNNEIERLEARLE 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 367 RKDKDITILQCRLQELQLEFTETQKLTLKKDkfLQEKDEMLQELEKKLTQVQNSLLKKEKELEKQQcmaTELEMTVKEAK 446
Cdd:TIGR02168 411 RLEDRRERLQQEIEELLKKLEEAELKELQAE--LEELEEELEELQEELERLEEALEELREELEEAE---QALDAAERELA 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 447 QDKSKEAECKALQAEVQKLKNSL-EEAKQQERLAGEAPAAQQAAQCKE------EAALAGcHLE--------------DT 505
Cdd:TIGR02168 486 QLQARLDSLERLQENLEGFSEGVkALLKNQSGLSGILGVLSELISVDEgyeaaiEAALGG-RLQavvvenlnaakkaiAF 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 506 QRKLQKG----LLLDKQKADTIQELQRELQMLQKESSMAEKEQTSNRKRVEEL----------SLELSEALRKLENSDKE 571
Cdd:TIGR02168 565 LKQNELGrvtfLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKAlsyllggvlvVDDLDNALELAKKLRPG 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 572 KR--QLQKTVAEQDMKMNDMLDRIKHQHREQGSIKCKLEEDLQEATKLLEDKREQLKKSKEHEKLMEGELEALR---QEF 646
Cdd:TIGR02168 645 YRivTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRkelEEL 724
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 647 KKKDKTLKENSRKLEEENENLRAELQCCSTQLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQLDKALQkekhylQT 726
Cdd:TIGR02168 725 SRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKE------EL 798
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 727 TITKEAYDALSRKSAACQDDLTQALEKLNHVTSETKSLQQSLTQTQEKKAQLEEEIIAYEERMKKLNTELRKLrgfhqES 806
Cdd:TIGR02168 799 KALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEEL-----ES 873
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767990636 807 ELEVH-------------------AFDKKLEEMSCQVLQWQKQHQNDLKMLAAKEEQLREFQEEMAALKENLLED 862
Cdd:TIGR02168 874 ELEALlnerasleealallrseleELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEE 948
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
523-856 |
1.29e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 65.86 E-value: 1.29e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 523 IQELQRELQMLQKESSMAEKEQTSNRKRVEelsLELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKHQHREQGS 602
Cdd:TIGR02169 193 IDEKRQQLERLRREREKAERYQALLKEKRE---YEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEE 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 603 IKCKLEEDLQEATKLLEDKREQLKKskeheklmegELEALRQEFKKKDKTLKENSRKLEEENENLRaelqccstQLESSL 682
Cdd:TIGR02169 270 IEQLLEELNKKIKDLGEEEQLRVKE----------KIGELEAEIASLERSIAEKERELEDAEERLA--------KLEAEI 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 683 NKYntsQQVIQDLNKEIALQKESLMSLQAQLdKALQKEKHYLQTTItkeayDALSRKSAACQDDLTQALEKLNHVTSETK 762
Cdd:TIGR02169 332 DKL---LAEIEELEREIEEERKRRDKLTEEY-AELKEELEDLRAEL-----EEVDKEFAETRDELKDYREKLEKLKREIN 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 763 SLQQSLTQTQEKKAQLEEEIIAYEERMKKLNTELRKLRGFHQESELEVHAFDKKLEEMSCQVLQWQKQHQNDLKMLAAKE 842
Cdd:TIGR02169 403 ELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVE 482
|
330
....*....|....
gi 767990636 843 EQLREFQEEMAALK 856
Cdd:TIGR02169 483 KELSKLQRELAEAE 496
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
233-865 |
3.21e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.69 E-value: 3.21e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 233 QETQKRLSEVWQKVSQQDDLIQELRNKLacsNALVLEREKAlIKLQAdfasctathryppsSSEECEDIKKIL-----KH 307
Cdd:TIGR02168 175 KETERKLERTRENLDRLEDILNELERQL---KSLERQAEKA-ERYKE--------------LKAELRELELALlvlrlEE 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 308 LQEQKDSQCLHVEEYQNLVKDLRVELEAVSEQKRNIMKDMMKLELDLHGLREE---TSAHIERKDKDITILQCRLQELQL 384
Cdd:TIGR02168 237 LREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKElyaLANEISRLEQQKQILRERLANLER 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 385 EFTETQKLTLKKDKFLQEKDEMLQELEKKLTQVQNsllkkekelekqQCMATELEMTVKEAKQDKSKEAEcKALQAEVQK 464
Cdd:TIGR02168 317 QLEELEAQLEELESKLDELAEELAELEEKLEELKE------------ELESLEAELEELEAELEELESRL-EELEEQLET 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 465 LKNSLEEAKQQERLAgeapaaqqaaqcKEEAALAGCHLEDTQRKLQK-----GLLLDKQKADTIQELQRELQMLQKESSM 539
Cdd:TIGR02168 384 LRSKVAQLELQIASL------------NNEIERLEARLERLEDRRERlqqeiEELLKKLEEAELKELQAELEELEEELEE 451
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 540 AEKEQTSNRKRVEELSLELSEALRKLensDKEKRQLQKTVAEQDMkMNDMLDRIkhqhreqgsikckleEDLQEATKLLE 619
Cdd:TIGR02168 452 LQEELERLEEALEELREELEEAEQAL---DAAERELAQLQARLDS-LERLQENL---------------EGFSEGVKALL 512
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 620 DKREQLkkSKEHEKLmeGELEALRQEFKK-KDKTLKENSRKLEEENENlrAELQCCSTQLESSLNKYN------TSQQVI 692
Cdd:TIGR02168 513 KNQSGL--SGILGVL--SELISVDEGYEAaIEAALGGRLQAVVVENLN--AAKKAIAFLKQNELGRVTflpldsIKGTEI 586
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 693 QDLNKEIALQKESLMSLQAQLDK--------------------------ALQKEKHYLQTTITKEAYDALSRKSAACQDD 746
Cdd:TIGR02168 587 QGNDREILKNIEGFLGVAKDLVKfdpklrkalsyllggvlvvddldnalELAKKLRPGYRIVTLDGDLVRPGGVITGGSA 666
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 747 LTQAleKLNHVTSETKSLQQSLTQTQEKKAQLEEEIIAYEERMKKLNTELRKLRGFHQESELEVHAFDKKLEEMSCQVLQ 826
Cdd:TIGR02168 667 KTNS--SILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQ 744
|
650 660 670
....*....|....*....|....*....|....*....
gi 767990636 827 WQKQHQNDLKMLAAKEEQLREFQEEMAALKENLLEDDKE 865
Cdd:TIGR02168 745 LEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAE 783
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
400-760 |
6.52e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.46 E-value: 6.52e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 400 LQEKDEMLQELEKKLTQVQNSllkkekelekqqcmATELEMTVKEAKQDKSkeaeckALQAEVQKLKNSLEEAKQQERLA 479
Cdd:TIGR02168 672 ILERRREIEELEEKIEELEEK--------------IAELEKALAELRKELE------ELEEELEQLRKELEELSRQISAL 731
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 480 GEAPAAQQAAQCKEEAALAGCHLEDTQRKLQKGLLLD---------KQKADTIQELQRELQMLQKESSMAEKEQTSNRKR 550
Cdd:TIGR02168 732 RKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEErleeaeeelAEAEAEIEELEAQIEQLKEELKALREALDELRAE 811
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 551 VEELSLELSEALRKLENSDKEKRQLQKTV---AEQDMKMNDMLDRIKHQHREQGSIKCKLEEDLQEATKLLEDKREQLKK 627
Cdd:TIGR02168 812 LTLLNEEAANLRERLESLERRIAATERRLedlEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALAL 891
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 628 SKEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENLRAELQCCSTQLESSLNKYNTSQQVIQ----DLNKEIALQK 703
Cdd:TIGR02168 892 LRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEalenKIEDDEEEAR 971
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767990636 704 ESLMSLQAQLDK-------ALQKEKHYlqttitKEAYDALSRKsaacQDDLTQALEKLNHVTSE 760
Cdd:TIGR02168 972 RRLKRLENKIKElgpvnlaAIEEYEEL------KERYDFLTAQ----KEDLTEAKETLEEAIEE 1025
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
360-683 |
4.21e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.76 E-value: 4.21e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 360 ETSAHIERKDKDITILQCRLQELQLEFTETQKLTLKKDKFLQEKDEMLQELEKKLTQVQNSLLKKEKELEKQQCMATELE 439
Cdd:TIGR02168 674 ERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLS 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 440 MTVKEAKQDKSKEAEckALQAEVQKLKNSLEEAKQQERLAGEAPAAQQAAqcKEEAALAGCHLEDTQRKLQKGLLLDKQK 519
Cdd:TIGR02168 754 KELTELEAEIEELEE--RLEEAEEELAEAEAEIEELEAQIEQLKEELKAL--REALDELRAELTLLNEEAANLRERLESL 829
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 520 ADTIQELQRELQMLQKESSMAEKEQTSNRKRVEELSLELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKhqhre 599
Cdd:TIGR02168 830 ERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELR----- 904
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 600 qgsikcKLEEDLQEATKLLEDKREQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENLRAELQCCSTQLE 679
Cdd:TIGR02168 905 ------ELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLE 978
|
....
gi 767990636 680 SSLN 683
Cdd:TIGR02168 979 NKIK 982
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
504-865 |
1.29e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 56.08 E-value: 1.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 504 DTQRKLQKGLLLDKQKADTIQELQRELQMLQKESSMAEKEQTSNRKRVEELSlELSEALRKLEN---SDKEKRQLQKTVA 580
Cdd:COG4913 593 DDRRRIRSRYVLGFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQ-ERREALQRLAEyswDEIDVASAEREIA 671
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 581 EQDmkmnDMLDRIkhqhrEQGSIKCK-LEEDLQEATKLLEDKREQLKKSKEHEKLMEGELEALRQEfkkkdktLKENSRK 659
Cdd:COG4913 672 ELE----AELERL-----DASSDDLAaLEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEE-------LDELQDR 735
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 660 LEEENENLRAELQCCSTQLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQLDKALQKekhYlqttitKEAYDALSRK 739
Cdd:COG4913 736 LEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRA---F------NREWPAETAD 806
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 740 SAACQDDLTQALEKLNHVTSE-----TKSLQQSLTQTQEKK-----AQLEEEIIAYEERMKKLNTELRKLRgFHQESELE 809
Cdd:COG4913 807 LDADLESLPEYLALLDRLEEDglpeyEERFKELLNENSIEFvadllSKLRRAIREIKERIDPLNDSLKRIP-FGPGRYLR 885
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 767990636 810 VHAFDKKLEEmscqVLQ-WQKQHQNDLKMLAAKEEQLREFQEEMAALKENLLEDDKE 865
Cdd:COG4913 886 LEARPRPDPE----VREfRQELRAVTSGASLFDEELSEARFAALKRLIERLRSEEEE 938
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
230-802 |
1.41e-07 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 56.00 E-value: 1.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 230 QEHQETQKRLSevwQKVSQQDDLIQELRNKL------------ACSNALVLEREKALIKLQADFASCTATHRYPPSSSEE 297
Cdd:pfam12128 279 EERQETSAELN---QLLRTLDDQWKEKRDELngelsaadaavaKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQSE 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 298 CEDIKKILKHLQE-QKDSQclhvEEYQnlvkdlRVELEAVSEQKRnimkdmmklelDLHGLREETSAHIERKDKDITILQ 376
Cdd:pfam12128 356 LENLEERLKALTGkHQDVT----AKYN------RRRSKIKEQNNR-----------DIAGIKDKLAKIREARDRQLAVAE 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 377 CRLQELQ-----------LEFTETQ---KLTLKKDKFLQekDEMLQELEKKLTQVQNSLLKKEKELEKQQCMATELEMTV 442
Cdd:pfam12128 415 DDLQALEselreqleagkLEFNEEEyrlKSRLGELKLRL--NQATATPELLLQLENFDERIERAREEQEAANAEVERLQS 492
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 443 KEAKQDKSKEAECKALQ---AEVQKLKNSLEEAKQQ-------------------ERLAGEAPAAQQAAQC--------- 491
Cdd:pfam12128 493 ELRQARKRRDQASEALRqasRRLEERQSALDELELQlfpqagtllhflrkeapdwEQSIGKVISPELLHRTdldpevwdg 572
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 492 --KEEAALAGCHLEDTQRKLQKGLLLDKQKADTIQELQRELQMLQKESSMAEKEQTSNRKRVEELSLELSEALRKLENSD 569
Cdd:pfam12128 573 svGGELNLYGVKLDLKRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNAR 652
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 570 KEKRQLQKTVAEQDMKMNDMLDRIKHQHREQ-GSIKCKLEEDLQEATKLLEDKREQLkksKEHEKLMEGELEALRQEFKK 648
Cdd:pfam12128 653 LDLRRLFDEKQSEKDKKNKALAERKDSANERlNSLEAQLKQLDKKHQAWLEEQKEQK---REARTEKQAYWQVVEGALDA 729
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 649 KDKTLKEnsrKLEEENENLRAELQCCSTQLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQLDKALQKEKHYLQT-T 727
Cdd:pfam12128 730 QLALLKA---AIAARRSGAKAELKALETWYKRDLASLGVDPDVIAKLKREIRTLERKIERIAVRRQEVLRYFDWYQETwL 806
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767990636 728 ITKEAYDALSRKSAACQDDLTQALEKLnhvTSETKSlqqsltqtqeKKAQLEEEIIAYEERMKKLNTELRKLRGF 802
Cdd:pfam12128 807 QRRPRLATQLSNIERAISELQQQLARL---IADTKL----------RRAKLEMERKASEKQQVRLSENLRGLRCE 868
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
234-719 |
1.96e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 55.46 E-value: 1.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 234 ETQKRLSEVWQKVSQQDDLIQELR-----------------NKLACSNALVLEREKALIKLQADFASCTATHRYPPSSSE 296
Cdd:PRK03918 197 EKEKELEEVLREINEISSELPELReeleklekevkeleelkEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIE 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 297 ECEDIKKILKHLQEQKDSQCLHVEEYQNLVKDLR---VELEAVSEQKRNIMKDMMKLELDLHGLrEETSAHIERKDKDIT 373
Cdd:PRK03918 277 ELEEKVKELKELKEKAEEYIKLSEFYEEYLDELReieKRLSRLEEEINGIEERIKELEEKEERL-EELKKKLKELEKRLE 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 374 ILQCRLQELQ-LEFTETQKLTLKKDKFLQEKDE---MLQELEKKLTQVQNSLLKKEKELEKQQCMATELEMTVKEAKQDK 449
Cdd:PRK03918 356 ELEERHELYEeAKAKKEELERLKKRLTGLTPEKlekELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAK 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 450 SKEAECKAL-------------QAEVQKLKNSLEEAKQQERLAGEAPAAQQAAQCKEEAALAGCHLEDTQRKLQ---KGL 513
Cdd:PRK03918 436 GKCPVCGRElteehrkelleeyTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEeklKKY 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 514 LLDKQKADT--IQELQRELQMLQKESSMAEKEQtsnrKRVEELSLELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLD 591
Cdd:PRK03918 516 NLEELEKKAeeYEKLKEKLIKLKGEIKSLKKEL----EKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELE 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 592 R----IKHQHREQGSIKcKLEEDLQEATKLLEDKREQLKKSKEHEKLMEGELEALRQEFKKKDKTL-KENSRKLEEENEN 666
Cdd:PRK03918 592 ErlkeLEPFYNEYLELK-DAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYsEEEYEELREEYLE 670
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|...
gi 767990636 667 LRAELQCCSTQLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQaQLDKALQK 719
Cdd:PRK03918 671 LSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELE-KLEKALER 722
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
445-704 |
3.37e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.61 E-value: 3.37e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 445 AKQDKSKEAECKALQAEVQKLKNSLEEAKQQERLAGEApaaqqaaqckeeaalagchLEDTQRKLqkgllldKQKADTIQ 524
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQ-------------------LAALERRI-------AALARRIR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 525 ELQRELQMLQKESSMAEKEQTSNRKRVEELSLELSEALR---KLENSDKEKRQLQKTVAEQDMKMNDMLDRIKHQHREQG 601
Cdd:COG4942 73 ALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRalyRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 602 sikckleEDLQEATKLLEDKREQLKKSKEheklmegELEALRQEFKKKDKTLKENSRKLEEENENLRAELQCCSTQLESS 681
Cdd:COG4942 153 -------EELRADLAELAALRAELEAERA-------ELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAEL 218
|
250 260
....*....|....*....|...
gi 767990636 682 LNKYNTSQQVIQDLNKEIALQKE 704
Cdd:COG4942 219 QQEAEELEALIARLEAEAAAAAE 241
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
388-820 |
3.37e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 54.76 E-value: 3.37e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 388 ETQKLTLKKDKFLQEKDEMLQELEKKLTQVQNSLLKKEKELEKQQCMATELEmtvKEAKQDKSKEAECKALQAEVQK--- 464
Cdd:PTZ00121 1346 EAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAK---KKAEEDKKKADELKKAAAAKKKade 1422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 465 LKNSLEEAKQQERLAGEAPAAQQAAQCKEEAALAGcHLEDTQRKLQkglllDKQKADTIQ---ELQRELQMLQKESSMAE 541
Cdd:PTZ00121 1423 AKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAK-KAEEAKKKAE-----EAKKADEAKkkaEEAKKADEAKKKAEEAK 1496
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 542 KEQTSNRKRVEElsLELSEALRKLENSDK--EKRQLQKTVAEQDMKMNDMLDRIKHQHREQGSIKCKLEEDLQEATKLLE 619
Cdd:PTZ00121 1497 KKADEAKKAAEA--KKKADEAKKAEEAKKadEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEE 1574
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 620 DKREQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSRKleEENENLRAELQCCSTQLESSLNKYNTSQQVIQDLNKEI 699
Cdd:PTZ00121 1575 DKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKK--AEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEEL 1652
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 700 ALQKESLMSLQAQLDKALQKEKHYLQTTITKEAYDALSRKSAACQDDLTQALEKLNHVTSETKSLQQSLTQTQEKKAQLE 779
Cdd:PTZ00121 1653 KKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKA 1732
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 767990636 780 EEIIAYEERMKKLNTELRKLRGFHQESELEVHAFDKKLEEM 820
Cdd:PTZ00121 1733 EEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEI 1773
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
229-721 |
5.68e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.91 E-value: 5.68e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 229 IQEHQETQKRLSEVWQKVSQQDDLIQELRNKLACSNALVLEREKALIKLQADFASCTATHRYPPSSSEECEDIKKILKHL 308
Cdd:PRK03918 209 INEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKEL 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 309 QEQKDSQCLHVEEYQNLVKDLR---VELEAVSEQKRNIMKDMMKLELDLHGLrEETSAHIERKDKDITILQCRLQELQ-L 384
Cdd:PRK03918 289 KEKAEEYIKLSEFYEEYLDELReieKRLSRLEEEINGIEERIKELEEKEERL-EELKKKLKELEKRLEELEERHELYEeA 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 385 EFTETQKLTLKKDKFLQEKDE---MLQELEKKLTQVQNSLLKKEKELEKQQCMATELEMTVKEAKQDKSKEAECKALQAE 461
Cdd:PRK03918 368 KAKKEELERLKKRLTGLTPEKlekELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTE 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 462 VQKLKNSLEEAKQQERLAGEAPAAQQaaqcKEEAALAGCHLEDTQRKLQKGLLLDKQKADTIQELQRELQMLQKESSMAE 541
Cdd:PRK03918 448 EHRKELLEEYTAELKRIEKELKEIEE----KERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKK 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 542 KEQTSNrkrVEELSLELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKHQHREQGSIKCKLEEDLQEATKLLE-- 619
Cdd:PRK03918 524 AEEYEK---LKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEpf 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 620 --------DKREQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSRKLE--------EENENLRAELqccsTQLESSLN 683
Cdd:PRK03918 601 yneylelkDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEelekkyseEEYEELREEY----LELSRELA 676
|
490 500 510
....*....|....*....|....*....|....*...
gi 767990636 684 KYNTSQQVIQDLNKEIalqKESLMSLQAQLDKALQKEK 721
Cdd:PRK03918 677 GLRAELEELEKRREEI---KKTLEKLKEELEEREKAKK 711
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
330-779 |
9.67e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 53.20 E-value: 9.67e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 330 RVELEAVSEQKRNIMKDMMKLELDLHGLREETSAHIERK----DKD----ITILQCRlQELQLEFTETQKLtlkkDKFLQ 401
Cdd:pfam15921 362 RTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNkrlwDRDtgnsITIDHLR-RELDDRNMEVQRL----EALLK 436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 402 E-KDEMLQELEKKLTQVQNSLLKKEKELEKQQCMATELEMTVKEAKQDKSKEAECKALQAEVQKLKNSLEEAKQQ-ERLA 479
Cdd:pfam15921 437 AmKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAiEATN 516
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 480 GEAPAAQQAAQCK----EEAALAGCHLEDTQRKLQKGLLLDKQKADTIQELQRELQ-MLQ------KESSMAEKEQTSNR 548
Cdd:pfam15921 517 AEITKLRSRVDLKlqelQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIEnMTQlvgqhgRTAGAMQVEKAQLE 596
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 549 KRVEELSLELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKHQHREQGSIKckleedlQEATKLLEdkreQLKKS 628
Cdd:pfam15921 597 KEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIK-------QERDQLLN----EVKTS 665
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 629 KEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENLRAELQCCSTQLESSLNKYNTSQQVIQDLNKEIALQKESLMS 708
Cdd:pfam15921 666 RNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDA 745
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767990636 709 LQAQ---LDKAL---QKEKHYLQttitkeaydalSRKSAACQDDLTQALEKlNHVTSETKSLQQSLTQTQEKKAQLE 779
Cdd:pfam15921 746 LQSKiqfLEEAMtnaNKEKHFLK-----------EEKNKLSQELSTVATEK-NKMAGELEVLRSQERRLKEKVANME 810
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
299-859 |
8.27e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 50.11 E-value: 8.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 299 EDIKKILKHLQEQKDSQCLHVEEYQNLVKDLRVELEAvSEQKRNIMKDMMKLELDLHGLREETSAHIERKDKDITILQCR 378
Cdd:pfam05483 229 EEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEE-SRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQR 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 379 LQELQLEFTETQKLTLKKDKFLQEKDEMLQElekKLTQVQNSLLKKEKELEKQQCMATELEMTvkEAKQDKSKEAECKAL 458
Cdd:pfam05483 308 SMSTQKALEEDLQIATKTICQLTEEKEAQME---ELNKAKAAHSFVVTEFEATTCSLEELLRT--EQQRLEKNEDQLKII 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 459 QAEVQKLKNSLEEAKQQERLAGEAPAAQQAAQCKEEAALagchleDTQRKLQKgllLDKQKADTIQELQRELQMLQKESS 538
Cdd:pfam05483 383 TMELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKLL------DEKKQFEK---IAEELKGKEQELIFLLQAREKEIH 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 539 MAEKEQTSNRKRVEELSLELSEALRKLENsdkEKRQLQKTVAEQDMKMNDMLDRIKHQHREQGSIKcKLEEDLQEATKLL 618
Cdd:pfam05483 454 DLEIQLTAIKTSEEHYLKEVEDLKTELEK---EKLKNIELTAHCDKLLLENKELTQEASDMTLELK-KHQEDIINCKKQE 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 619 EDKREQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENLRAELQCCSTQLESSLNKYNTSQQVIQDLNKE 698
Cdd:pfam05483 530 ERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKN 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 699 I-ALQKEslmslqaqlDKALQKekhylQTTITKEAYDALSRKSAACQDDLTQALEKLNHVTSETKSLQQSLTQTQEKKAQ 777
Cdd:pfam05483 610 IeELHQE---------NKALKK-----KGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEEKLLE 675
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 778 LEEEIIAYEERMKKLNTELrKLRGFHQESEL------EVHAFDKKLEEMSCQVLQWQKQHQNDLKMLAAKEEQLREFQEE 851
Cdd:pfam05483 676 EVEKAKAIADEAVKLQKEI-DKRCQHKIAEMvalmekHKHQYDKIIEERDSELGLYKNKEQEQSSAKAALEIELSNIKAE 754
|
....*...
gi 767990636 852 MAALKENL 859
Cdd:pfam05483 755 LLSLKKQL 762
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
520-742 |
9.47e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 49.06 E-value: 9.47e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 520 ADT-IQELQRELQMLQKESSMAEKEQTSNRKRVEELSLELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKHQHR 598
Cdd:COG3883 14 ADPqIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERAR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 599 ---EQGSIKCKLE-----EDLQEATklleDKREQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENLRAE 670
Cdd:COG3883 94 alyRSGGSVSYLDvllgsESFSDFL----DRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAA 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767990636 671 LQccstQLESSLNKYntsQQVIQDLNKEIALQKESLMSLQAQLDKALQKEKHYLQTTITKEAYDALSRKSAA 742
Cdd:COG3883 170 KA----ELEAQQAEQ---EALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAA 234
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
557-798 |
1.27e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.61 E-value: 1.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 557 ELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKhqhreqgsikcKLEEDLQEATKLLEDKREQLKKSKEHEKLME 636
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLA-----------ALERRIAALARRIRALEQELAALEAELAELE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 637 GELEALRQEFKKKDKTLKENSRKLEEENENLRAEL---QCCSTQLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQL 713
Cdd:COG4942 90 KEIAELRAELEAQKEELAELLRALYRLGRQPPLALllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAEL 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 714 DKALQKEKHYLQTtiTKEAYDALSRKSAACQDDLTQALEKLNHVTSETKSLQQSLTQTQEKKAQLEEEIIAYEERMKKLN 793
Cdd:COG4942 170 EAERAELEALLAE--LEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAG 247
|
....*
gi 767990636 794 TELRK 798
Cdd:COG4942 248 FAALK 252
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
622-865 |
1.32e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.30 E-value: 1.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 622 REQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENLRAelqcCSTQLESSLNKYNTSQQVIQDLNKEIAL 701
Cdd:TIGR02169 673 PAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGE----IEKEIEQLEQEEEKLKERLEELEEDLSS 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 702 QKESLMSLQAQLDKaLQKEKHYLQTTITK--EAYDALSRKSAACQ-DDLTQALEKLNHVTSE----TKSLQQSLTQTQEK 774
Cdd:TIGR02169 749 LEQEIENVKSELKE-LEARIEELEEDLHKleEALNDLEARLSHSRiPEIQAELSKLEEEVSRiearLREIEQKLNRLTLE 827
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 775 KAQLEEEI--------------IAYEERMKKLNTELRKLRGFHQESELEVHAFDKKLEEMSCQVLQWQKQH---QNDLKM 837
Cdd:TIGR02169 828 KEYLEKEIqelqeqridlkeqiKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLrelERKIEE 907
|
250 260
....*....|....*....|....*...
gi 767990636 838 LAAKEEQLREFQEEMAALKENLLEDDKE 865
Cdd:TIGR02169 908 LEAQIEKKRKRLSELKAKLEALEEELSE 935
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
130-799 |
1.37e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.16 E-value: 1.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 130 KLKEDEVILYEEEMGNHNENTGEKLHLAQEQLALAGDKIASLERSLNLYRDKYQSSLSNIELLECQVKMLQGELGGIMGQ 209
Cdd:COG1196 217 ELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 210 EPEnkgdhskvriytspcMIQEHQETQKRLSEVWQKVSQQDDLIQELRNKLACSNALVLEREKALIKLQadfasctathr 289
Cdd:COG1196 297 LAR---------------LEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAE----------- 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 290 yppsssEECEDIKKILKHLQEQKDSQCLHVEEYQNLVKDLRVELEAVSEQKRNIMKDMMKLELDLHGLREETSAHIERKD 369
Cdd:COG1196 351 ------EELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELE 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 370 KDITILQCRLQELQLEFTETQKLTLKKDKFLQEKDEMLQELEKKLTQVQNSLLKKEKELEKQQCMATELEMTVKEAKQDK 449
Cdd:COG1196 425 ELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYE 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 450 SKEAECKALQAEVQKLKNSLEEAkqqeRLAGEAPAAQQAAQCKEEAALAGCHLEDTQRkLQKGLLLDKQKADTIQELQRE 529
Cdd:COG1196 505 GFLEGVKAALLLAGLRGLAGAVA----VLIGVEAAYEAALEAALAAALQNIVVEDDEV-AAAAIEYLKAAKAGRATFLPL 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 530 LQMLQKESSMAEKEQTSNRKRVEELSLELSEALRKLensdkekRQLQKTVAEQDmkmndmldRIKHQHREQGSIKCKLEE 609
Cdd:COG1196 580 DKIRARAALAAALARGAIGAAVDLVASDLREADARY-------YVLGDTLLGRT--------LVAARLEAALRRAVTLAG 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 610 DLQEATKLLEDKREQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENLRAElqccstQLESSLNKYNTSQ 689
Cdd:COG1196 645 RLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEE------ERELAEAEEERLE 718
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 690 QVIQDLNKEIALQKESLMSLQAQLDKALQKEKHYLQTTITKEAYDALSRKsaacQDDLTQALEKLNHV----TSETKSLQ 765
Cdd:COG1196 719 EELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERE----LERLEREIEALGPVnllaIEEYEELE 794
|
650 660 670
....*....|....*....|....*....|....
gi 767990636 766 QSLTQTQEKKAQLEEEIIAYEERMKKLNTELRKL 799
Cdd:COG1196 795 ERYDFLSEQREDLEEARETLEEAIEEIDRETRER 828
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
320-857 |
1.46e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 49.27 E-value: 1.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 320 EEYQNLVKDLRVELEAVSEQKRNIMKDMM-----KLELDLHglreETSAHIERKDKDITIlqcrlqelQLEFTETQKLTL 394
Cdd:PRK02224 165 EEYRERASDARLGVERVLSDQRGSLDQLKaqieeKEEKDLH----ERLNGLESELAELDE--------EIERYEEQREQA 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 395 KKDKflQEKDEMLQELEKKLTQVQnsllkkekelekqqcmatELEMTVKEAKQDKSK-EAECKALQAEVQKLKNSLEEak 473
Cdd:PRK02224 233 RETR--DEADEVLEEHEERREELE------------------TLEAEIEDLRETIAEtEREREELAEEVRDLRERLEE-- 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 474 qqerLAGEApaaqqaaqckeEAALAGCHLEDTQRKLQKGLLLDKQKADTiqELQRELQMLQKESSMAEKEQTSNRKRVEE 553
Cdd:PRK02224 291 ----LEEER-----------DDLLAEAGLDDADAEAVEARREELEDRDE--ELRDRLEECRVAAQAHNEEAESLREDADD 353
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 554 LSLELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKHQHREQGSIkcklEEDLQEATKLLEDKREQLKKSKEHEK 633
Cdd:PRK02224 354 LEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDA----PVDLGNAEDFLEELREERDELREREA 429
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 634 LMEGELEALRQEFKKKDKTL------------------------KENSRKLEEENENLRAE-------------LQCCST 676
Cdd:PRK02224 430 ELEATLRTARERVEEAEALLeagkcpecgqpvegsphvetieedRERVEELEAELEDLEEEveeveerleraedLVEAED 509
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 677 QLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQLDK--ALQKEKHYLQTTITKEAYDALSRkSAACQDDLT------ 748
Cdd:PRK02224 510 RIERLEERREDLEELIAERRETIEEKRERAEELRERAAEleAEAEEKREAAAEAEEEAEEAREE-VAELNSKLAelkeri 588
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 749 QALEKLNHVTSETKSLQQSLTQTQEKKAQLEEEIIAYEERMKKLNTELRKLRGFHQESELEVHAFDKK-----LEEMSCQ 823
Cdd:PRK02224 589 ESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKEraeeyLEQVEEK 668
|
570 580 590
....*....|....*....|....*....|....*..
gi 767990636 824 VLQWQKQH---QNDLKMLAAKEEQLREFQEEMAALKE 857
Cdd:PRK02224 669 LDELREERddlQAEIGAVENELEELEELRERREALEN 705
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
502-716 |
1.51e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.61 E-value: 1.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 502 LEDTQRKLQKGLLLDKQKADTIQELQRELQMLQKESSMAEKEQTSNRKRVEELSLELSEALRKLENSDKEKRQLQKTVAE 581
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 582 QDMKMNDMLDRIkHQHREQGSIKCKLEED-----------LQEATKLLEDKREQLKKSKEheklmegELEALRQEFKKKD 650
Cdd:COG4942 102 QKEELAELLRAL-YRLGRQPPLALLLSPEdfldavrrlqyLKYLAPARREQAEELRADLA-------ELAALRAELEAER 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 767990636 651 KTLKENSRKLEEENENLRAELQCCSTQLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQLDKA 716
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
378-864 |
2.04e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.96 E-value: 2.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 378 RLQELQLEFTETQKLTLKKDKFLQEKdemLQELEKKLTQVQNSLLK----KEKELEKQQCMATELEMTVKEAKQDKS-KE 452
Cdd:pfam15921 86 QVKDLQRRLNESNELHEKQKFYLRQS---VIDLQTKLQEMQMERDAmadiRRRESQSQEDLRNQLQNTVHELEAAKClKE 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 453 AECKALQAEVQKLKN---SLEEAKQQERLAGEAPAAQQAAQCKEEAALAGCHLEDTQRKLQKGLL-LDKQKA---DTIQE 525
Cdd:pfam15921 163 DMLEDSNTQIEQLRKmmlSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFRSLGSAISKILReLDTEISylkGRIFP 242
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 526 LQRELQMLQKESS-----MAEKEQTSNRKRVEELSLELSEALRKLENSDKEKRQLQ---KTVAEQDMKMNDMLDRikhQH 597
Cdd:pfam15921 243 VEDQLEALKSESQnkielLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQsqlEIIQEQARNQNSMYMR---QL 319
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 598 REQGSIKCKLEEDLQEATKLLEDKREQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENLRAELQCCSTQ 677
Cdd:pfam15921 320 SDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQ 399
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 678 LESSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQLdkalqkekhylqTTITKEAYDALSRKSAACQDDlTQALEKLNHV 757
Cdd:pfam15921 400 NKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALL------------KAMKSECQGQMERQMAAIQGK-NESLEKVSSL 466
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 758 TSETKSLQQSLTQTQEKKAQLEEEIIAYEERMKKLNTELrklrgfhQESELEVHAFDKKLEEMSCQV-LQWQkqhqnDLK 836
Cdd:pfam15921 467 TAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASL-------QEKERAIEATNAEITKLRSRVdLKLQ-----ELQ 534
|
490 500
....*....|....*....|....*...
gi 767990636 837 MLAAKEEQLREFQEEMAALKENLLEDDK 864
Cdd:pfam15921 535 HLKNEGDHLRNVQTECEALKLQMAEKDK 562
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
516-865 |
2.29e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 48.50 E-value: 2.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 516 DKQKADTIQELQRELQMLQKESSMAEKEQTSNRKRVEELSLELS---EALRKLENSDKEKRQLQKTVAEQDMKMNDMLDR 592
Cdd:PRK02224 201 EKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEeheERREELETLEAEIEDLRETIAETEREREELAEE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 593 IKHQHREQGSIKCKLEEDLQEA------TKLLEDKREQLKKSKE--HEKLMEGELEAlrQEFKKKDKTLKENSRKLEEEN 664
Cdd:PRK02224 281 VRDLRERLEELEEERDDLLAEAglddadAEAVEARREELEDRDEelRDRLEECRVAA--QAHNEEAESLREDADDLEERA 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 665 ENLRAELQCCSTQLESSLNKYNTSQQVIQDLNKEIAlqkeslmSLQAQLDKAlqkekhylqttitKEAYDALSRKSAACQ 744
Cdd:PRK02224 359 EELREEAAELESELEEAREAVEDRREEIEELEEEIE-------ELRERFGDA-------------PVDLGNAEDFLEELR 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 745 DDLTQALEKLNHVTSETKSLQQSLTQTQE--------------KKAQLEEEIIAYEERMKKLNTELRKLRGFHQESElEV 810
Cdd:PRK02224 419 EERDELREREAELEATLRTARERVEEAEAlleagkcpecgqpvEGSPHVETIEEDRERVEELEAELEDLEEEVEEVE-ER 497
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 767990636 811 HAFDKKLEEMSCQVLQWQKQHQNDLKMLAAKEEQLREFQEEMAALKENLLEDDKE 865
Cdd:PRK02224 498 LERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAE 552
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
324-799 |
2.32e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 48.48 E-value: 2.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 324 NLVKDLRVELEAVSEQKRNIMKDMMKLELDLHGLrEETSAHIERKDKDITILQCRLQELQLEFTETQKLTLKKDKFLQEK 403
Cdd:TIGR04523 166 KQKEELENELNLLEKEKLNIQKNIDKIKNKLLKL-ELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEK 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 404 DEMLQELEKKLTQVQNSllkkekelekQQCMATELEMTVKEAKQDKSKeaeCKALQAEVQKLKNSLEEAKQQErlageap 483
Cdd:TIGR04523 245 TTEISNTQTQLNQLKDE----------QNKIKKQLSEKQKELEQNNKK---IKELEKQLNQLKSEISDLNNQK------- 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 484 AAQQAAQCKEEAALAGCHLEDTQRKLQKGLLLDKQKADTIQELQRELQMLQKESSMAEKEQTSNRKRVEELSLELSEALR 563
Cdd:TIGR04523 305 EQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQ 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 564 KLENSDKEKRQLQKTVAEQDmKMNDMLDRIKHQHREQGSIKCKLEEDLQEATKLLEDKREQLKKSKEHEKLMEGELEALR 643
Cdd:TIGR04523 385 EIKNLESQINDLESKIQNQE-KLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTR 463
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 644 QEFKKKDKTLKENSRKLEEENENLRAELQCCSTQLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQLD------KAL 717
Cdd:TIGR04523 464 ESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKekeskiSDL 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 718 QKEKHYLQTTITKEAY-----------DALSRKSAACQDDLTQALEKLNHVTSETKSLQQSLTQTQEKKAQLEEEIIAYE 786
Cdd:TIGR04523 544 EDELNKDDFELKKENLekeideknkeiEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAK 623
|
490
....*....|...
gi 767990636 787 ERMKKLNTELRKL 799
Cdd:TIGR04523 624 KENEKLSSIIKNI 636
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
239-865 |
2.56e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.53 E-value: 2.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 239 LSEVWQKVSQQDDLIQELRNKLacsNALVLEREKAL--IKLQADFASCTATHRyppssSEECEDIKKILKHLQEQKDSQC 316
Cdd:TIGR02169 179 LEEVEENIERLDLIIDEKRQQL---ERLRREREKAEryQALLKEKREYEGYEL-----LKEKEALERQKEAIERQLASLE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 317 LHVEEYQNLVKDLRVELEAVSEQKRNIMKDMMKL----ELDLHGLREETSAHIERKDKDITILQCRLQELQLEFTETQKL 392
Cdd:TIGR02169 251 EELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgeeeQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAE 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 393 TLKKDKFLQEKDEMLQELEKKLTQVQNSLLKKEKELEKQQCMATELEMTVKEAKQdkskeaECKALQAEVQKLKNSLEEA 472
Cdd:TIGR02169 331 IDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRD------ELKDYREKLEKLKREINEL 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 473 KQQERLAGEAPAAQQAAQCKEEAALAGchLEDTQRKLQKGLlldKQKADTIQELQRELQMLQKESSMAEKEQTSNRKRVE 552
Cdd:TIGR02169 405 KRELDRLQEELQRLSEELADLNAAIAG--IEAKINELEEEK---EDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYD 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 553 ELSLELSEALRKLENSDKEKRQLQKTVAE---QDMKMNDMLDRIKHQHREQGSIKCKL-------------------EED 610
Cdd:TIGR02169 480 RVEKELSKLQRELAEAEAQARASEERVRGgraVEEVLKASIQGVHGTVAQLGSVGERYataievaagnrlnnvvvedDAV 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 611 LQEATKLLEDKR--------------EQLKKSKEHEK---------------------------LMEGELEALRQEFKK- 648
Cdd:TIGR02169 560 AKEAIELLKRRKagratflplnkmrdERRDLSILSEDgvigfavdlvefdpkyepafkyvfgdtLVVEDIEAARRLMGKy 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 649 ---------------------KDKTLKENSRKLEEENENLRAELQCCSTQLESSLNKYNTSQQVIQDLNKEIALQKESLM 707
Cdd:TIGR02169 640 rmvtlegelfeksgamtggsrAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIG 719
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 708 SLQAQLDKALQKEKhylqttitkeaydalsrksaacqddltQALEKLNHVTSETKSLQQSLTQTQEKKAQLEEEIIAYEE 787
Cdd:TIGR02169 720 EIEKEIEQLEQEEE---------------------------KLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEE 772
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 788 -------------------RMKKLNTELRKLRGFHQESELEVHAFDKKLEEMSCQVLQWQKQHQNDLKMLAAKEEQLREF 848
Cdd:TIGR02169 773 dlhkleealndlearlshsRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSI 852
|
730
....*....|....*..
gi 767990636 849 QEEMAALKENLLEDDKE 865
Cdd:TIGR02169 853 EKEIENLNGKKEELEEE 869
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
513-716 |
2.88e-05 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 48.00 E-value: 2.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 513 LLLDKQKADTIQELQrELQMLQKESsMAEKEQTSNRKRVEELSLELSEALRKLEN------------SDKEKRQLQKTVA 580
Cdd:PRK05771 12 VTLKSYKDEVLEALH-ELGVVHIED-LKEELSNERLRKLRSLLTKLSEALDKLRSylpklnplreekKKVSVKSLEELIK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 581 EQDMKMNDMLDRIKHQHREQGSIKCK---LEEDLQEATKL----LEDKREQLKKS------------------------- 628
Cdd:PRK05771 90 DVEEELEKIEKEIKELEEEISELENEikeLEQEIERLEPWgnfdLDLSLLLGFKYvsvfvgtvpedkleelklesdvenv 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 629 -----------------KEHEKLMEGELEALrqEFKKKD----KTLKENSRKLEEENENLRAELQCCSTQLESSLNKYNT 687
Cdd:PRK05771 170 eyistdkgyvyvvvvvlKELSDEVEEELKKL--GFERLEleeeGTPSELIREIKEELEEIEKERESLLEELKELAKKYLE 247
|
250 260
....*....|....*....|....*....
gi 767990636 688 SQQVIQDLNkEIALQKESLMSLQAQLDKA 716
Cdd:PRK05771 248 ELLALYEYL-EIELERAEALSKFLKTDKT 275
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
513-671 |
2.88e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 46.84 E-value: 2.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 513 LLLDKQKADT-IQELQRELQMLQKESSMAEKEQTSNRKRVEELSLELSEA---LRKLENSDKEKRQLQKTVAEQDMK--- 585
Cdd:COG1579 8 ALLDLQELDSeLDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLekeIKRLELEIEEVEARIKKYEEQLGNvrn 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 586 ---MNDMLDRIKHQHREQGsikcKLEEDLQEATKLLEDKREQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSRKLEE 662
Cdd:COG1579 88 nkeYEALQKEIESLKRRIS----DLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEA 163
|
....*....
gi 767990636 663 ENENLRAEL 671
Cdd:COG1579 164 EREELAAKI 172
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
297-737 |
3.33e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.21 E-value: 3.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 297 ECEDIKKILKHLQEQKDSQCLHVEEYQNLVKDLRVELEAV---SEQKRNIMKDMMKLElDLHGLREETSAHIERKDKDIT 373
Cdd:PTZ00121 1351 EAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKkkaDEAKKKAEEDKKKAD-ELKKAAAAKKKADEAKKKAEE 1429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 374 ILQCrlQELQLEFTETQKLTLKKDKflQEKDEMLQELEKKLTQVQNSLLKKEKELEKQQcmATELEMTVKEAKQD----- 448
Cdd:PTZ00121 1430 KKKA--DEAKKKAEEAKKADEAKKK--AEEAKKAEEAKKKAEEAKKADEAKKKAEEAKK--ADEAKKKAEEAKKKadeak 1503
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 449 KSKEAECKALQAEVQKLKNSLEEAKQQE--------RLAGEAPAAQQAAQCKEEAALAGCHLEDTQRKLQKGLLLDKQKA 520
Cdd:PTZ00121 1504 KAAEAKKKADEAKKAEEAKKADEAKKAEeakkadeaKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKA 1583
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 521 DTIQELQRELQMLQKESSMAEKEQTSNRKRVEELSLELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKHQHREQ 600
Cdd:PTZ00121 1584 EEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKA 1663
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 601 GSIKCKLEED---LQEATKLLEDKR---EQLKKSKEHEKLMEgELEALRQEFKKKDKTLKENSRKLEEENENLRAELQCC 674
Cdd:PTZ00121 1664 AEEAKKAEEDkkkAEEAKKAEEDEKkaaEALKKEAEEAKKAE-ELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEED 1742
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767990636 675 STQLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQLDKALQKEKHYLQTTITKEAYDALS 737
Cdd:PTZ00121 1743 KKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFD 1805
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
636-854 |
4.84e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.07 E-value: 4.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 636 EGELEALRQEFKKKDKTLKENSRKLEEENEnlraelqccstQLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQ---AQ 712
Cdd:COG4942 26 EAELEQLQQEIAELEKELAALKKEEKALLK-----------QLAALERRIAALARRIRALEQELAALEAELAELEkeiAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 713 LDKALQKEKHYLQTTItKEAYDALSRKSAAC---QDDLTQALEKLNHVTSETKSLQQSLTQTQEKKAQLEEEIIAYEERM 789
Cdd:COG4942 95 LRAELEAQKEELAELL-RALYRLGRQPPLALllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAER 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767990636 790 KKLNTELRKLRGFHQESELEVHAFDKKLEEMSCQvlqwQKQHQNDLKMLAAKEEQLREFQEEMAA 854
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLLARLEKE----LAELAAELAELQQEAEELEALIARLEA 234
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
637-861 |
5.39e-05 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 46.99 E-value: 5.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 637 GELEALRQEFKKKDKTLKENSRKLEEENENLRAELQccstQLEsslnkYNTSQqvIQDLNkEIALQKESLMSLQAQLDKA 716
Cdd:COG0497 151 AGLEELLEEYREAYRAWRALKKELEELRADEAERAR----ELD-----LLRFQ--LEELE-AAALQPGEEEELEEERRRL 218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 717 LQKEKhyLQTTITkEAYDALSRKSAACQDDLTQALEKLNHVTSETKSLQQSLTQTQEKKAQLEE---EIIAY-------- 785
Cdd:COG0497 219 SNAEK--LREALQ-EALEALSGGEGGALDLLGQALRALERLAEYDPSLAELAERLESALIELEEaasELRRYldslefdp 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 786 ------EERMKKLNTELRKlrgfHQESelevhafdkkLEEmscqVLQWQKQHQNDLKMLAAKEEQLREFQEEMAALKENL 859
Cdd:COG0497 296 erleevEERLALLRRLARK----YGVT----------VEE----LLAYAEELRAELAELENSDERLEELEAELAEAEAEL 357
|
..
gi 767990636 860 LE 861
Cdd:COG0497 358 LE 359
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
502-700 |
5.83e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.22 E-value: 5.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 502 LEDTQRKLQkgLLLD-KQKADTIQELQRELQMLQKESSMAEKEQtsNRKRVEELSLELSEALRKLENSDKEKRQLQKTVA 580
Cdd:COG4913 244 LEDAREQIE--LLEPiRELAERYAAARERLAELEYLRAALRLWF--AQRRLELLEAELEELRAELARLEAELERLEARLD 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 581 EQDmkmnDMLDRIKHQHREQGSIKCK-LEEDLQEATKLLEDKREQLKKSKEHEKLMEGELEALRQEFkkkdktlKENSRK 659
Cdd:COG4913 320 ALR----EELDELEAQIRGNGGDRLEqLEREIERLERELEERERRRARLEALLAALGLPLPASAEEF-------AALRAE 388
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 767990636 660 LEEENENLRAELQCCSTQLESSLNKYNTSQQVIQDLNKEIA 700
Cdd:COG4913 389 AAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIA 429
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
517-856 |
6.79e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.94 E-value: 6.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 517 KQKADTIQELQRELQMLQKESSMAEKEQTSNRKRVEELSLELSEALRKLENSDKEKRQL---QKTVAEQDMKMNDMLDRI 593
Cdd:TIGR04523 113 KNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELeneLNLLEKEKLNIQKNIDKI 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 594 KHQHREQGSIKCKLEEDLQEATKL------LEDKREQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENL 667
Cdd:TIGR04523 193 KNKLLKLELLLSNLKKKIQKNKSLesqiseLKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEK 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 668 RAELQCCSTQLESSLNKYNTSQQVIQDLNKEiaLQKESLMSLQAQLDKaLQKEKHYLQTTITKEaydalSRKSAACQDDL 747
Cdd:TIGR04523 273 QKELEQNNKKIKELEKQLNQLKSEISDLNNQ--KEQDWNKELKSELKN-QEKKLEEIQNQISQN-----NKIISQLNEQI 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 748 TQALEKLNHVTSETKSLQQSLTQTQEKKAQLEEEIIAYEERMKKLNTELRKLRGFHQESELEVHAFDKKLEEMSCQVLQW 827
Cdd:TIGR04523 345 SQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELL 424
|
330 340
....*....|....*....|....*....
gi 767990636 828 QKQHQNDLKMLAAKEEQLREFQEEMAALK 856
Cdd:TIGR04523 425 EKEIERLKETIIKNNSEIKDLTNQDSVKE 453
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
436-851 |
8.04e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.68 E-value: 8.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 436 TELEMTVKEAKQDKSKEAECKALQAEVQKLKNSLEEAKQQERLAGEAPAAQQAAQCKEEAALAGCHLEDTQRKLQKGLLL 515
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEE 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 516 DKQKADTIQELQRELQMLQKESSMAEKE--------QTSNRKRVEELSLELSEALRKLENSDKEKRQLQKTVAEQDMKMN 587
Cdd:COG4717 151 LEERLEELRELEEELEELEAELAELQEEleelleqlSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELE 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 588 DMLDRIKHQHREQ---------------------------------------GSIKCKLEEDLQEATKLLEDKREQLKKS 628
Cdd:COG4717 231 QLENELEAAALEErlkearlllliaaallallglggsllsliltiagvlflvLGLLALLFLLLAREKASLGKEAEELQAL 310
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 629 KEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENLRaelqccstQLESSLNKYNTSQQVIQDLNKEIALQKESLMS 708
Cdd:COG4717 311 PALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQ--------ELLREAEELEEELQLEELEQEIAALLAEAGVE 382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 709 LQAQLDKALQKekhylqttitKEAYDALSRKSAACQDDLTQALEKLNHV--TSETKSLQQSLTQTQEKKAQLEEEIIAYE 786
Cdd:COG4717 383 DEEELRAALEQ----------AEEYQELKEELEELEEQLEELLGELEELleALDEEELEEELEELEEELEELEEELEELR 452
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767990636 787 ERMKKLNTELRKLRGFHQESELEvHAFDKKLEEMSCQVLQWQKqhqndLKMLAAKEEQLREFQEE 851
Cdd:COG4717 453 EELAELEAELEQLEEDGELAELL-QELEELKAELRELAEEWAA-----LKLALELLEEAREEYRE 511
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
507-782 |
9.52e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 46.16 E-value: 9.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 507 RKLQKGLL-------LDKQKADTIQELQRELQMLQKESSMAEKEQTSNRKRVEELSLELSEALRKLENSDKEKRQLQKTV 579
Cdd:PHA02562 153 RKLVEDLLdisvlseMDKLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTI 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 580 AEQDMKMNDMLDRIKHQhreqgsikcklEEDLQEATKLLEDKREQLKK-----SKEHEKLME-GELEALRQEFKKKDKTL 653
Cdd:PHA02562 233 KAEIEELTDELLNLVMD-----------IEDPSAALNKLNTAAAKIKSkieqfQKVIKMYEKgGVCPTCTQQISEGPDRI 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 654 KENSRKLEEENENLRaELQCCSTQLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQldkalqkekhylqttiTKEAY 733
Cdd:PHA02562 302 TKIKDKLKELQHSLE-KLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDK----------------AKKVK 364
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 767990636 734 DALSRKSAACQDDltqaleklnhvTSETKSLQQSLTQTQEKKAQLEEEI 782
Cdd:PHA02562 365 AAIEELQAEFVDN-----------AEELAKLQDELDKIVKTKSELVKEK 402
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
618-865 |
1.06e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.60 E-value: 1.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 618 LEDKREQLKKSKEHEKLMEGELEALRQEFKK--KDKTLKENSRKLEEENENLRAELQccstqlessLNKYNTSQQVIQDL 695
Cdd:TIGR02169 172 KEKALEELEEVEENIERLDLIIDEKRQQLERlrREREKAERYQALLKEKREYEGYEL---------LKEKEALERQKEAI 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 696 NKEIALQKESLMSLQAQLDKalqkekhylqttitkeaydaLSRKSAACQDDLTQALEKLNHVTS-ETKSLQQSLTQTQEK 774
Cdd:TIGR02169 243 ERQLASLEEELEKLTEEISE--------------------LEKRLEEIEQLLEELNKKIKDLGEeEQLRVKEKIGELEAE 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 775 KAQLEEEIIAYEERMKKLNTELRKLRGFHQESELEVHAFDKKLEEMSCQVLQWQKQHQNDLKMLAAKEEQLREFQEEMAA 854
Cdd:TIGR02169 303 IASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAE 382
|
250
....*....|.
gi 767990636 855 LKENLLEDDKE 865
Cdd:TIGR02169 383 TRDELKDYREK 393
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
560-821 |
1.26e-04 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 46.05 E-value: 1.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 560 EALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKHQHREQGSIKCkLEEDLQEATKLLEDKRE-----------QLKKS 628
Cdd:PLN02939 153 QALEDLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEI-LEEQLEKLRNELLIRGAteglcvhslskELDVL 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 629 KEHEKLMEGELEALRQEFKKKDKTlKENSRKLEEENENLRAELQccstQLESslnKYNTSQQviqDLNKEIALQKESLM- 707
Cdd:PLN02939 232 KEENMLLKDDIQFLKAELIEVAET-EERVFKLEKERSLLDASLR----ELES---KFIVAQE---DVSKLSPLQYDCWWe 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 708 ---SLQAQLDKALQKEKHYLQTtitkeaydaLSRksaacQDDLTQALEKLNHVTSETKSLQQSLtqtqEKKAQLEEEIIA 784
Cdd:PLN02939 301 kveNLQDLLDRATNQVEKAALV---------LDQ-----NQDLRDKVDKLEASLKEANVSKFSS----YKVELLQQKLKL 362
|
250 260 270
....*....|....*....|....*....|....*..
gi 767990636 785 YEERMKKLNTELRKLRGFHQESELEVHAFDKKLEEMS 821
Cdd:PLN02939 363 LEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEES 399
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
318-865 |
1.30e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 46.12 E-value: 1.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 318 HVEEYQNLVKDLRVELEAVSEQKRNIMKDMMKLELDLHGLREETSAHIERKDKDITILQCRLQELQLEFTETQKLTLKKD 397
Cdd:pfam02463 234 LNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 398 KFLQEKDEMLQELEKKLTQVQNSLLKKEKELEKQQCMATELEMTVKEAKQDKSKEAECKALQAEVQKLKNSLEEAKQQER 477
Cdd:pfam02463 314 EKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLK 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 478 LAGEAPAAQQAAQCKEEAALAGCHLEDTQRKLQKGLLLDKQKADTIQELQRELQMLQKESSMAEKEQTSNR---KRVEEL 554
Cdd:pfam02463 394 EEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDElelKKSEDL 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 555 SLELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKHQHREQGSIKCKLEEDLQEATKLLEDKREQLKKSKEHEKL 634
Cdd:pfam02463 474 LKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEV 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 635 MEGELEAL-RQEFKKKDKTLKENSRKLEEENENLRAELQCCSTQLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQL 713
Cdd:pfam02463 554 SATADEVEeRQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTE 633
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 714 DKALQKEKHYLQTTITKEAYDALSRKSAACQDDLTQALEKLNHVTSETKSLQQSLTQTQEKKAQLEE---EIIAYEERMK 790
Cdd:pfam02463 634 LTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEikkKEQREKEELK 713
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767990636 791 KLNTELRKLRGFHQESELEVHAFDKKLEEMSCQVLQWQKQHQNDLKMLAAKEEQLREFQEEMAALKENLLEDDKE 865
Cdd:pfam02463 714 KLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKV 788
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
289-414 |
1.55e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 45.62 E-value: 1.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 289 RYPPSSSEECEDIKKILKHLQEQkdsqclhVEEYQNLVKDLRVELEavsEQKRNImkdmMKLELDLHGLREETSAHIeRK 368
Cdd:COG2433 399 REKEHEERELTEEEEEIRRLEEQ-------VERLEAEVEELEAELE---EKDERI----ERLERELSEARSEERREI-RK 463
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 767990636 369 DKDITILQCRLQELQLEftetqkltlkkdkfLQEKDEMLQELEKKL 414
Cdd:COG2433 464 DREISRLDREIERLERE--------------LEEERERIEELKRKL 495
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
525-860 |
2.30e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 45.43 E-value: 2.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 525 ELQRELQMLQKESSMAEKEQTSNRKRVEELSLELSEALRKLENSDKEKRQLQKTVAEQDMK-------MNDMLDRIKHQH 597
Cdd:TIGR01612 513 ELYKPDEVPSKNIIGFDIDQNIKAKLYKEIEAGLKESYELAKNWKKLIHEIKKELEEENEDsihlekeIKDLFDKYLEID 592
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 598 REQGSIKcKLEEDLQEATKLLEDKREQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENLRAELqccSTQ 677
Cdd:TIGR01612 593 DEIIYIN-KLKLELKEKIKNISDKNEYIKKAIDLKKIIENNNAYIDELAKISPYQVPEHLKNKDKIYSTIKSEL---SKI 668
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 678 LESSLNK-YNTSQQVIQDLNKEIALQKESLMSLQAQLDKALQKekhyLQTTITKEAYDALSRKSAACQDDLTQALEKLNH 756
Cdd:TIGR01612 669 YEDDIDAlYNELSSIVKENAIDNTEDKAKLDDLKSKIDKEYDK----IQNMETATVELHLSNIENKKNELLDIIVEIKKH 744
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 757 VTSE-TKSLQQSLTQTQEKKAQLEEEIIAYEERMKKLNTELRKLRGFHQESELEVHAFDKKLEEMScqvlQWQKQHQNDL 835
Cdd:TIGR01612 745 IHGEiNKDLNKILEDFKNKEKELSNKINDYAKEKDELNKYKSKISEIKNHYNDQINIDNIKDEDAK----QNYDKSKEYI 820
|
330 340
....*....|....*....|....*
gi 767990636 836 KMLAAKEEQLREFQEEMAALKENLL 860
Cdd:TIGR01612 821 KTISIKEDEIFKIINEMKFMKDDFL 845
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
468-663 |
2.68e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 44.85 E-value: 2.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 468 SLEEA--KQQERLAGEAPAAQQAAQCKEEAalagcHLEDTQRKLQKgllLDKQkadtIQELQRELQMLQKEssMAEKEQt 545
Cdd:COG2433 377 SIEEAleELIEKELPEEEPEAEREKEHEER-----ELTEEEEEIRR---LEEQ----VERLEAEVEELEAE--LEEKDE- 441
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 546 snrkRVEELSLELSEALRKLENSDKEKRQLQKTVAEqdmkmNDMLDRikhqhreqgsikcKLEEdLQEATKLLEDKREQL 625
Cdd:COG2433 442 ----RIERLERELSEARSEERREIRKDREISRLDRE-----IERLER-------------ELEE-ERERIEELKRKLERL 498
|
170 180 190
....*....|....*....|....*....|....*...
gi 767990636 626 KKSkeHEKLMEGELEALrqefKKKDKTLKENSRKLEEE 663
Cdd:COG2433 499 KEL--WKLEHSGELVPV----KVVEKFTKEAIRRLEEE 530
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
451-651 |
3.51e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 3.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 451 KEAECKALQAEVQKLKNSLEEAKQQERLAGEAPA--AQQAAQCKEEAALAGCH--LEDTQRKLQKgLLLD----KQKADT 522
Cdd:COG4913 615 LEAELAELEEELAEAEERLEALEAELDALQERREalQRLAEYSWDEIDVASAEreIAELEAELER-LDASsddlAALEEQ 693
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 523 IQELQRELQMLQKESSMAEKEQTSNRKRVEELSLELSEALRKLENSDKEKRQLQKTVAEQdmkmndMLDRIKHQHREQgs 602
Cdd:COG4913 694 LEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEE------RFAAALGDAVER-- 765
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 767990636 603 ikcKLEEDLQEATKLLEDKREQLkkskeheklmEGELEALRQEFKKKDK 651
Cdd:COG4913 766 ---ELRENLEERIDALRARLNRA----------EEELERAMRAFNREWP 801
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
517-863 |
3.58e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.37 E-value: 3.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 517 KQKADTIQELQRELQMLQKESSMAEKE--QTSNRKRVEELSLELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIK 594
Cdd:COG4717 91 AELQEELEELEEELEELEAELEELREEleKLEKLLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEA 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 595 HQHREQGSIKCKLEEDLQEATKLLEDKREQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENLRAELQCC 674
Cdd:COG4717 171 ELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARL 250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 675 STQLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQLDKALQKEKHYLQTTItkEAYDALSRKSAACQDDLTQALEKL 754
Cdd:COG4717 251 LLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEA--EELQALPALEELEEEELEELLAAL 328
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 755 NHVTSETKSLQQSLTQTQEKKAQLEEEIIAYEERMKKLNTELRKLRGFHQESELEVHAFDKKLEEmscqvlqwQKQHQND 834
Cdd:COG4717 329 GLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQ--------AEEYQEL 400
|
330 340
....*....|....*....|....*....
gi 767990636 835 LKMLAAKEEQLREFQEEMAALKENLLEDD 863
Cdd:COG4717 401 KEELEELEEQLEELLGELEELLEALDEEE 429
|
|
| AAA_13 |
pfam13166 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
638-810 |
4.06e-04 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease.
Pssm-ID: 463796 [Multi-domain] Cd Length: 712 Bit Score: 44.28 E-value: 4.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 638 ELEALRQEFKKKDKTLKENSRKLEEENENLRAELQccstqLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQLDKAL 717
Cdd:pfam13166 322 DVEDIESEAEVLNSQLDGLRRALEAKRKDPFKSIE-----LDSVDAKIESINDLVASINELIAKHNEITDNFEEEKNKAK 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 718 QKEKHYLQTTITKEaYDALSRKSAACQDDLTQALEKLNHVTSETKSLQqsltqtqEKKAQLEEEIIAYEERMKKLNTELR 797
Cdd:pfam13166 397 KKLRLHLVEEFKSE-IDEYKDKYAGLEKAINSLEKEIKNLEAEIKKLR-------EEIKELEAQLRDHKPGADEINKLLK 468
|
170
....*....|...
gi 767990636 798 KLrgFHQESELEV 810
Cdd:pfam13166 469 AF--GFGELELSF 479
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
407-774 |
4.70e-04 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 44.36 E-value: 4.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 407 LQELEKKLTQVQNSLLKKEKELEKQQCMATELEMTVKEAKQDKSKEAECKALQAEVQKLKNSLEEAKQQERLAGEAPAAQ 486
Cdd:pfam07111 72 LQELRRLEEEVRLLRETSLQQKMRLEAQAMELDALAVAEKAGQAEAEGLRAALAGAEMVRKNLEEGSQRELEEIQRLHQE 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 487 QAAQCKEEAALAGCHLEDTQRKLQKGL-LLDKQKADTIQEL---QRELQMLQKESSMAEKEQtsnrkrveELSLELSEAL 562
Cdd:pfam07111 152 QLSSLTQAHEEALSSLTSKAEGLEKSLnSLETKRAGEAKQLaeaQKEAELLRKQLSKTQEEL--------EAQVTLVESL 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 563 RKLENsdkEKRQLQKTVAEQDMKMNDMLDRIKHQHREQGSIKCK---LEEDLQEATKLLEDKREQLKKSKEHEKLMEGE- 638
Cdd:pfam07111 224 RKYVG---EQVPPEVHSQTWELERQELLDTMQHLQEDRADLQATvelLQVRVQSLTHMLALQEEELTRKIQPSDSLEPEf 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 639 -------LEALRQEFKKKDKTLKENSRKLEEENENLRAELQCCSTQLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQA 711
Cdd:pfam07111 301 pkkcrslLNRWREKVFALMVQLKAQDLEHRDSVKQLRGQVAELQEQVTSQSQEQAILQRALQDKAAEVEVERMSAKGLQM 380
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767990636 712 QLDKALQKEKHYLQTTIT-KEAYDALSRKSAACQDDLTQALEKLNHVTSETKSLQQSLTQTQEK 774
Cdd:pfam07111 381 ELSRAQEARRRQQQQTASaEEQLKFVVNAMSSTQIWLETTMTRVEQAVARIPSLSNRLSYAVRK 444
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
609-800 |
5.28e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 5.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 609 EDLQEATKLLEDKREQLK-------KSKEHEKLME--GELEALRQEFK-----KKDKTLKENSRKLEEENENLRAELQCC 674
Cdd:COG4913 235 DDLERAHEALEDAREQIEllepireLAERYAAARErlAELEYLRAALRlwfaqRRLELLEAELEELRAELARLEAELERL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 675 STQLESSLNKYNTSQQVIQDL-NKEIALQKESLMSLQAQLDKALQKEKHY--------LQTTITKEAYDALSRKSAACQD 745
Cdd:COG4913 315 EARLDALREELDELEAQIRGNgGDRLEQLEREIERLERELEERERRRARLeallaalgLPLPASAEEFAALRAEAAALLE 394
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 767990636 746 DLTQALEKLNhvtSETKSLQQSLTQTQEKKAQLEEEIIAYEERMKKLNTELRKLR 800
Cdd:COG4913 395 ALEEELEALE---EALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALR 446
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
517-919 |
5.73e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.99 E-value: 5.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 517 KQKADTIQELQRELQMLQKESSMAEKEQTSNRKRVEELSlELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKHQ 596
Cdd:COG4717 60 KPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELE-ELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALE 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 597 HREQGSIKC--KLEEDLQEATKLLEDKREQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENLRAELQCC 674
Cdd:COG4717 139 AELAELPERleELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEA 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 675 STQLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQLDKALQKEKHYLQTTITKEA-------------YDALSRKSA 741
Cdd:COG4717 219 QEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAgvlflvlgllallFLLLAREKA 298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 742 ACQDDLTQALEKLNHVTSETKSLQQSLTQTQEKKAQLEEEIIAYEERMKKLNTELRKLRgfHQESELEVHAFDKKLEEMs 821
Cdd:COG4717 299 SLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAE--ELEEELQLEELEQEIAAL- 375
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 822 cqvlqWQKQHQNDLKMLAAKEEQLREFQE---EMAALKENLLEDDKEpccLPQWSVPKDTCRLYRGNDQIMTNLEQWAKQ 898
Cdd:COG4717 376 -----LAEAGVEDEEELRAALEQAEEYQElkeELEELEEQLEELLGE---LEELLEALDEEELEEELEELEEELEELEEE 447
|
410 420
....*....|....*....|.
gi 767990636 899 QKVANEKLGnQLREQVKYIAK 919
Cdd:COG4717 448 LEELREELA-ELEAELEQLEE 467
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
381-865 |
5.95e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.19 E-value: 5.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 381 ELQLEFTETQKLTLKKDKFLQEKDEMLQELEKKLTQVQNSLLKKEKELEKQQCMATELEMTVKEAKQDKSKEAECKALQA 460
Cdd:TIGR00618 195 KAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRA 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 461 EVQKLKNSLEEAKQQERLAGEAPAAQQAAQCKEEAALAGCHLEDTQRKLQKGLL----LDKQKADTIQELQRELQMLQKE 536
Cdd:TIGR00618 275 QEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMkraaHVKQQSSIEEQRRLLQTLHSQE 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 537 SSMA-EKEQTSNRKRVEELSLELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKHQHREQGSIKCKL---EEDLQ 612
Cdd:TIGR00618 355 IHIRdAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLahaKKQQE 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 613 EATKLLEDKREQLKKSKEHEKLMEGELEALRQEFKKKDKTL--KENSRKLEEENENLRA----ELQCCSTQLESSLNKYN 686
Cdd:TIGR00618 435 LQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLqtKEQIHLQETRKKAVVLarllELQEEPCPLCGSCIHPN 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 687 TSQQVIQDLNKEIALQkESLMSLQAQLDKALQKEKHYLQtTITKEAYDaLSRKSAACQDDLTQALEKLNHVTSETKSLQQ 766
Cdd:TIGR00618 515 PARQDIDNPGPLTRRM-QRGEQTYAQLETSEEDVYHQLT-SERKQRAS-LKEQMQEIQQSFSILTQCDNRSKEDIPNLQN 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 767 SLTQTQEKKAQLEEeiiayEERMKKLNTELRKLRGFHQESELEVHAFDKKLEEMSCQVLQWQKQHQNDLKMLAAKEEQLR 846
Cdd:TIGR00618 592 ITVRLQDLTEKLSE-----AEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALS 666
|
490
....*....|....*....
gi 767990636 847 EFQEEMAALKENLLEDDKE 865
Cdd:TIGR00618 667 IRVLPKELLASRQLALQKM 685
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
640-847 |
8.77e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.22 E-value: 8.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 640 EALRQEFKKKDKTLKENSRKLEEENENLRaelqccstQLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQLDKaLQK 719
Cdd:COG4717 53 KEADELFKPQGRKPELNLKELKELEEELK--------EAEEKEEEYAELQEELEELEEELEELEAELEELREELEK-LEK 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 720 EKHYLQTTITKEAYDALSRKSAACQDDLTQALEKLNHVTSETKSLQQSLTQTQEKKAQLEEEI-IAYEERMKKLNTELRK 798
Cdd:COG4717 124 LLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLsLATEEELQDLAEELEE 203
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 767990636 799 LRGFHQESELEVHAFDKKLEEMSCQVLQWQKQHQNdlkmlAAKEEQLRE 847
Cdd:COG4717 204 LQQRLAELEEELEEAQEELEELEEELEQLENELEA-----AALEERLKE 247
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
710-938 |
9.22e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 9.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 710 QAQLDKALQKEKHYLQTTI--TKEAYDALSRKSAACQDDLTQALEKLNHVTSETKSLQQSLTQTQEKKAQLEEEIIAYEE 787
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIaeLEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 788 RMKKLNTELRKLRG--------------FHQESELEVHAFDKKLEEMSCQVLQWQKQHQNDLKMLAAKEEQLREFQEEMA 853
Cdd:COG4942 98 ELEAQKEELAELLRalyrlgrqpplallLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELE 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 854 ALKENLLEDDKEpcclpqwsvpkdTCRLYRGNDQIMTNLEQWAKQQKVANEKLGNQLREQVKYIAKLSGEKDREPTRASS 933
Cdd:COG4942 178 ALLAELEEERAA------------LEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
....*
gi 767990636 934 PNTTR 938
Cdd:COG4942 246 AGFAA 250
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
109-611 |
1.16e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.18 E-value: 1.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 109 RQYQSILEKQTSDLVLLHHHCKLKEDEVILYEEEMGNHNENTGE----------KLHLAQEQLALAGDKIASLERSLNLY 178
Cdd:pfam15921 338 RMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKlladlhkrekELSLEKEQNKRLWDRDTGNSITIDHL 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 179 RDKYQSSLSNIELLECQVKMLQGELGGIMGQEPEN-KGDHSKVRIYTSpcMIQEHQETQKRLSEVWQKVSQQDDLIQELR 257
Cdd:pfam15921 418 RRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAiQGKNESLEKVSS--LTAQLESTKEMLRKVVEELTAKKMTLESSE 495
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 258 NKLACSNALVLEREKALIKLQADFASCTATHRYPPSSSEECEDIKKILKHLQEQKDSQCLHVEEYQNLVKDLRVELE--- 334
Cdd:pfam15921 496 RTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIEnmt 575
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 335 -AVSEQKRN---IMKDMMKLELDLHGLR---EETSAHIERKDKDITILQCRLQELQLEFTE-----TQKLTLKKDkFLQE 402
Cdd:pfam15921 576 qLVGQHGRTagaMQVEKAQLEKEINDRRlelQEFKILKDKKDAKIRELEARVSDLELEKVKlvnagSERLRAVKD-IKQE 654
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 403 KDEMLQELEKKLTQVQNSLLKKEKELEKQQCMATELEMTVKEAKQdkskeaECKALQAEVQKLKNSLeeaKQQERLAGea 482
Cdd:pfam15921 655 RDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKM------QLKSAQSELEQTRNTL---KSMEGSDG-- 723
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 483 paaqqaaqckeeaalagcHLEDTQRKLQKGLlldKQKADTIQELQRELQMLQKESSMAEKEQTSNRKRVEELSLELSEAL 562
Cdd:pfam15921 724 ------------------HAMKVAMGMQKQI---TAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVA 782
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767990636 563 RK-------LENSDKEKRQLQKTVAEQDMKMNDMLDRIKH-----QHREQGSIKCKLEEDL 611
Cdd:pfam15921 783 TEknkmageLEVLRSQERRLKEKVANMEVALDKASLQFAEcqdiiQRQEQESVRLKLQHTL 843
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
525-779 |
1.20e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.80 E-value: 1.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 525 ELQRELQMLQKEssmaEKEQTSNRKRVEELSLELSEaLRKLENSDKEKRQLQKTVAE-------QDMKMNDMLDRIKHQH 597
Cdd:pfam17380 345 ERERELERIRQE----ERKRELERIRQEEIAMEISR-MRELERLQMERQQKNERVRQeleaarkVKILEEERQRKIQQQK 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 598 REQGSIKCKLEEDLQEATKLLEDKREqlkksKEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENEnlraelqccstq 677
Cdd:pfam17380 420 VEMEQIRAEQEEARQREVRRLEEERA-----REMERVRLEEQERQQQVERLRQQEEERKRKKLELEKE------------ 482
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 678 lesslnkyNTSQQVIQDLNKEIaLQKESLMSLQAQLD-----KALQKEKHYLQTTITKEAydalSRKSAACQDDLTQALE 752
Cdd:pfam17380 483 --------KRDRKRAEEQRRKI-LEKELEERKQAMIEeerkrKLLEKEMEERQKAIYEEE----RRREAEEERRKQQEME 549
|
250 260
....*....|....*....|....*..
gi 767990636 753 klnhvtsETKSLQQSLTQTQEKKAQLE 779
Cdd:pfam17380 550 -------ERRRIQEQMRKATEERSRLE 569
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
393-683 |
1.33e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 43.14 E-value: 1.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 393 TLKKDKFLQEKDEMLQELEKKLTQVQNSLLKKEKELEkqqCMATELEMTVKEAKQDKSKeaeckalqaeVQKLKNSLEEA 472
Cdd:COG5022 805 LLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFS---LKAEVLIQKFGRSLKAKKR----------FSLLKKETIYL 871
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 473 KQQERLAGEAPAAQQAAQCKEEAAlagcHLEDTQRKLQKGLLLDKQKADTiqELQRELQMLQKESSMAEK--------EQ 544
Cdd:COG5022 872 QSAQRVELAERQLQELKIDVKSIS----SLKLVNLELESEIIELKKSLSS--DLIENLEFKTELIARLKKllnnidleEG 945
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 545 TSNRKRVEELSLELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKHQHREQGSIKCKLeEDLQEATKLLEDKREQ 624
Cdd:COG5022 946 PSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQY-GALQESTKQLKELPVE 1024
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 767990636 625 LKKSKEHEKLMEGELEALRQEfkkkdKTLKENSRKLEEENENLRAELQCCSTQLESSLN 683
Cdd:COG5022 1025 VAELQSASKIISSESTELSIL-----KPLQKLKGLLLLENNQLQARYKALKLRRENSLL 1078
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
296-870 |
1.47e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.75 E-value: 1.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 296 EECEDIKKILKHLQEQKDSQCLHVEEYQNLVKDLRVELEAVSEQKRNIMKDMMKLELDLHGLREETSAHIERKDK----- 370
Cdd:TIGR02169 336 AEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRlqeel 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 371 ------------DITILQCRLQELQLEFTETQKLTLKKDKFLQEKDEMLQELEKKLTQVQNSLLKKEKELEKQQCMATEL 438
Cdd:TIGR02169 416 qrlseeladlnaAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEA 495
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 439 EMTVKEAKQD----KSKEAECKALQAEVQKLKNSLEEAKQQERLAGEAPAAQQAAQ--CKEEAALAGC------------ 500
Cdd:TIGR02169 496 EAQARASEERvrggRAVEEVLKASIQGVHGTVAQLGSVGERYATAIEVAAGNRLNNvvVEDDAVAKEAiellkrrkagra 575
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 501 ------HLEDTQRKLQKGLL------------LDKQKA--------DTI----QELQREL-----------QMLQKESSM 539
Cdd:TIGR02169 576 tflplnKMRDERRDLSILSEdgvigfavdlveFDPKYEpafkyvfgDTLvvedIEAARRLmgkyrmvtlegELFEKSGAM 655
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 540 -----AEKEQTSNRKRVEELSLELSEALRKLENsdkEKRQLQKTVAEQDMKMNDMLDRIKHQHREQGSIKCKLEEDLQEA 614
Cdd:TIGR02169 656 tggsrAPRGGILFSRSEPAELQRLRERLEGLKR---ELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEE 732
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 615 TKLledkREQLKKSKEHEKLMEGELEALRQEFKKKDKTLKEnsrkLEEENENLRAELQccstQLESSLN--KYNTSQQVI 692
Cdd:TIGR02169 733 EKL----KERLEELEEDLSSLEQEIENVKSELKELEARIEE----LEEDLHKLEEALN----DLEARLShsRIPEIQAEL 800
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 693 QDLNKEIALQKESLMSLQAQLDKaLQKEKHYLqttitkeaydalsrksaacQDDLTQALEKLNHVTSETKSLQQSLTQTQ 772
Cdd:TIGR02169 801 SKLEEEVSRIEARLREIEQKLNR-LTLEKEYL-------------------EKEIQELQEQRIDLKEQIKSIEKEIENLN 860
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 773 EKKAQLEEEIIAYEERMKKLNTELRKLRGFHQESELEVHAFDKKLEEMSCQVLQwQKQHQNDLKmlaakeEQLREFQEEM 852
Cdd:TIGR02169 861 GKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEK-KRKRLSELK------AKLEALEEEL 933
|
650
....*....|....*...
gi 767990636 853 AALKENLLEDDKEPCCLP 870
Cdd:TIGR02169 934 SEIEDPKGEDEEIPEEEL 951
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
623-857 |
1.72e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 42.31 E-value: 1.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 623 EQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENLRAELQCCSTQLESSLNKyntsqqvIQDLNKEIALq 702
Cdd:PHA02562 195 QQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAA-------LNKLNTAAAK- 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 703 keslmsLQAQLDKaLQKEKHYLQTTITkeaydalsrkSAACQDDLTQALEKLNHVTSETKSLQQSLTQTQEKKAQLEEEI 782
Cdd:PHA02562 267 ------IKSKIEQ-FQKVIKMYEKGGV----------CPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIM 329
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767990636 783 IAYEERMKKLNTELRKLRGFHQESELEVHAFDKKLEEMScqvlQWQKQHQNDLKMLAAKEEQLREFQEEMAALKE 857
Cdd:PHA02562 330 DEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIE----ELQAEFVDNAEELAKLQDELDKIVKTKSELVK 400
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
228-671 |
2.30e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.95 E-value: 2.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 228 MIQEHQETQKRLSEVWQKV-----------SQQDDLIQELRNKLACSNALVLEREKALIKLQADFASCTAThryppssSE 296
Cdd:PRK02224 242 VLEEHEERREELETLEAEIedlretiaeteREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAV-------EA 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 297 ECEDIKKILKHLQEQKDSQCLHVEEYQNLVKDLRVELEAVSEQKRNIMKDMMKLELDLhglrEETSAHIERKDKDITILQ 376
Cdd:PRK02224 315 RREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESEL----EEAREAVEDRREEIEELE 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 377 CRLQEL--QLEFTETQ--KLTLKKDKFLQEKDEM---LQELEKKLTQVQNSLLKKEKELEKQQCMATELEM-------TV 442
Cdd:PRK02224 391 EEIEELreRFGDAPVDlgNAEDFLEELREERDELrerEAELEATLRTARERVEEAEALLEAGKCPECGQPVegsphveTI 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 443 KEAKQDKSK-EAECKALQAEVQKLKNSLEEAKQQERLAGEAPAAqqaaqcKEEAALAGCHLEDTQRKLQkgllldkQKAD 521
Cdd:PRK02224 471 EEDRERVEElEAELEDLEEEVEEVEERLERAEDLVEAEDRIERL------EERREDLEELIAERRETIE-------EKRE 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 522 TIQELQRELQMLQKESSMAEKEQTSNRKRVEELSLELSEALRKLENSDKEKRQLQKtVAEQDMKMNDMLDRIKhqhreqg 601
Cdd:PRK02224 538 RAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLER-IRTLLAAIADAEDEIE------- 609
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767990636 602 sikcKLEEDLQEATKLLEDKREQLKKSKEHEKLMEGELEALRQEFKKKDKT--------LKENSRKLEEENENLRAEL 671
Cdd:PRK02224 610 ----RLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKEraeeyleqVEEKLDELREERDDLQAEI 683
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
332-861 |
2.48e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.08 E-value: 2.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 332 ELEAVSEQKRNIMKDMMKLELDLHGLREETSAHIERKdkdiTILQCRLQELQLEFTETQKLTLKKDKFLQEKDEMLQELE 411
Cdd:pfam01576 6 EMQAKEEELQKVKERQQKAESELKELEKKHQQLCEEK----NALQEQLQAETELCAEAEEMRARLAARKQELEEILHELE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 412 KKLTQVQNSLLKKEKELEKQQCMATELEMTVKEAKQDKSK--------EAECKALQAEV----------QKLKNSLEE-- 471
Cdd:pfam01576 82 SRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKlqlekvttEAKIKKLEEDIllledqnsklSKERKLLEEri 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 472 AKQQERLAGEAPAAQQAAQCKEEAALAGCHLEDTQRKLQKGLL-LDKQK----------ADTIQELQRELQMLQKESSMA 540
Cdd:pfam01576 162 SEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQeLEKAKrklegestdlQEQIAELQAQIAELRAQLAKK 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 541 EKEQTSNRKRVEELSLELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKHQHREQGSIKCKLEE--DLQEATKLL 618
Cdd:pfam01576 242 EEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELEDtlDTTAAQQEL 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 619 EDKREQ----LKKSKEHE-KLMEGELEALRQ--------------EFKKKDKTLKENSRKLEEENENLRAELQCCSTQLE 679
Cdd:pfam01576 322 RSKREQevteLKKALEEEtRSHEAQLQEMRQkhtqaleelteqleQAKRNKANLEKAKQALESENAELQAELRTLQQAKQ 401
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 680 SSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQLDKaLQKEKHYLQTTitkeaydalsrksaacqddLTQALEKLNHVTS 759
Cdd:pfam01576 402 DSEHKRKKLEGQLQELQARLSESERQRAELAEKLSK-LQSELESVSSL-------------------LNEAEGKNIKLSK 461
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 760 ETKSLQQSLTQTQEKKAQLEEEIIAYEERMKKLNTELRKLRGFHQESELEVHAFDKKLEEMSCQVLQWQKQHQNDLKMLA 839
Cdd:pfam01576 462 DVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLE 541
|
570 580
....*....|....*....|..
gi 767990636 840 AKEEQLREFQEEMAALKENLLE 861
Cdd:pfam01576 542 ALEEGKKRLQRELEALTQQLEE 563
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
268-633 |
2.51e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.03 E-value: 2.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 268 LEREKALIKLQADFASCTA--THRYPPSSSEECEDIKKILKHLQEQKDsqclhVEEYQNLVKDLRVELEAVSEQKRNIMK 345
Cdd:pfam17380 236 MERRKESFNLAEDVTTMTPeyTVRYNGQTMTENEFLNQLLHIVQHQKA-----VSERQQQEKFEKMEQERLRQEKEEKAR 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 346 DMMKLEldlhGLREETSAHIERKDKDITILQCRLQELQLEFTETQKLTLKKDKFLQEKDEMlQELEKKLTQVQNSLLKKE 425
Cdd:pfam17380 311 EVERRR----KLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQEERKRELERIRQ-EEIAMEISRMRELERLQM 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 426 KELEKQQCMATELEMTVKEAKQDKSKEAECKALQAEVQKLKNSLEEAKQQERLAGEAPAAQQAAQCKEEAALAGCHLEdt 505
Cdd:pfam17380 386 ERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVE-- 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 506 qrKLQKGLLLDKQKADTIQELQRELQMLQKESSMAEKEQTSNRKRveelslELSEALRKLENSDKEKRQLQKTVAEQDMK 585
Cdd:pfam17380 464 --RLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQ------AMIEEERKRKLLEKEMEERQKAIYEEERR 535
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 767990636 586 MNDMLDRIKHQH-REQGSIKCKLEEDLQEATKL--LEDKREQLKKSKEHEK 633
Cdd:pfam17380 536 REAEEERRKQQEmEERRRIQEQMRKATEERSRLeaMEREREMMRQIVESEK 586
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
234-827 |
2.53e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.88 E-value: 2.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 234 ETQKRLSEVWQKVSQQDDLIQELRNKLACSNALVLEREKALIKLQADFASCTATHRYPPSSSEECEDIKKILKHLQEQK- 312
Cdd:TIGR00618 297 AHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHt 376
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 313 DSQCLHVEEYQnlvKDLRVELEAVSEQKRNIMKDMMKLELDLHGLREETSAHIERKDKDITILQCRLQELQLEFTETQKL 392
Cdd:TIGR00618 377 LTQHIHTLQQQ---KTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQC 453
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 393 TLKKDKFLQEKDEMLQELEKKLTQVQNSLLKKEKELEKQQCMATELEMTVKEAKQDKSkEAECKALQAEVQKLKNSLEEA 472
Cdd:TIGR00618 454 EKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCI-HPNPARQDIDNPGPLTRRMQR 532
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 473 KQQERLAGEAPAAQQAAQCKEEAALAGCHLEDTQRKLQKGLLL---DKQKADTIQELQRELQMLQKESSMAEKEQTSNRK 549
Cdd:TIGR00618 533 GEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILtqcDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLAC 612
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 550 RVEELSLELSEALRKLENS----DKEKRQLQKTVAEQDMKMNDMLDRIKHQHREQGSIKCKLEEDLQEATKLLEDKREQL 625
Cdd:TIGR00618 613 EQHALLRKLQPEQDLQDVRlhlqQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQL 692
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 626 KKSKEhekLMEGELEALRQEFKKkdktlkensrklEEENENLRAELQCCSTQLESSLNKYNTSQQviQDLNKEIALQKES 705
Cdd:TIGR00618 693 TYWKE---MLAQCQTLLRELETH------------IEEYDREFNEIENASSSLGSDLAAREDALN--QSLKELMHQARTV 755
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 706 LMSLQAQLDKALQKEKHYLQT-TITKEAYDALSRKSAACQDDLTQALEKLNHVTSETKSLQQSLTQTQEKKAQLEEEIIA 784
Cdd:TIGR00618 756 LKARTEAHFNNNEEVTAALQTgAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLS 835
|
570 580 590 600
....*....|....*....|....*....|....*....|...
gi 767990636 785 YEERMKKLNTELRKLRGFHQESELEVHAFDKKLEEMSCQVLQW 827
Cdd:TIGR00618 836 RLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKL 878
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
515-719 |
2.93e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.54 E-value: 2.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 515 LDKQKADtIQELQRELQMLQKESSM--AEKEQTSNRKRVEELSLELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLdr 592
Cdd:COG3206 184 LPELRKE-LEEAEAALEEFRQKNGLvdLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELL-- 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 593 ikhqhreQGSIKCKLEEDLQEATKLLEDKREQLkkSKEHEKL--MEGELEALRQEFKKKDKTLKENSRK----LEEENEN 666
Cdd:COG3206 261 -------QSPVIQQLRAQLAELEAELAELSARY--TPNHPDViaLRAQIAALRAQLQQEAQRILASLEAeleaLQAREAS 331
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 767990636 667 LRAELQccstQLESSLNKYNTSQQVIQDLNKEIAlqkeslmSLQAQLDKALQK 719
Cdd:COG3206 332 LQAQLA----QLEARLAELPELEAELRRLEREVE-------VARELYESLLQR 373
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
297-791 |
3.07e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.54 E-value: 3.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 297 ECEDIKKILKHLQEQKDSQCLHVEEYQNLVKDLRVELEAVSEQKRNIMKDMMKLELDLhglrEETSAHIERKDKDITILQ 376
Cdd:TIGR04523 219 QISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKEL----EQNNKKIKELEKQLNQLK 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 377 CRLQELQLEftETQKLTLKKDKFLQEKDEMLQELEKKLTQVQNSLLKKEKELEKQQCMATELEMT-VKEAKQDKSKEAEC 455
Cdd:TIGR04523 295 SEISDLNNQ--KEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESEnSEKQRELEEKQNEI 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 456 KALQAEVQKLKNSLEEAKQQerlageapaaqqaaqckeeaalagchLEDTQRKLQKGLLLDKQKADTIQELQRELQMLQK 535
Cdd:TIGR04523 373 EKLKKENQSYKQEIKNLESQ--------------------------INDLESKIQNQEKLNQQKDEQIKKLQQEKELLEK 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 536 ESSMAEKEQTSNRKRVEELSLELSEALRKLENSDKEKRQLQKTVAEQDMKMNdmldrikhqhreqgsikcKLEEDLQEAT 615
Cdd:TIGR04523 427 EIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSIN------------------KIKQNLEQKQ 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 616 KLLEDKREQLKKSKEHEKLMEGELealrQEFKKKDKTLKENSRKLEEENENLRAELQCCSTQLES--SLNKYNTSQQVIQ 693
Cdd:TIGR04523 489 KELKSKEKELKKLNEEKKELEEKV----KDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKddFELKKENLEKEID 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 694 DLNKEIALQKESLMSLQAQLDKALQKEKHYlqttitKEAYDALSRKSAACQDDLTQALEKLNHVTSETKSLQQSLTQTQE 773
Cdd:TIGR04523 565 EKNKEIEELKQTQKSLKKKQEEKQELIDQK------EKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKS 638
|
490
....*....|....*...
gi 767990636 774 KKAQLEEEIIAYEERMKK 791
Cdd:TIGR04523 639 KKNKLKQEVKQIKETIKE 656
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
558-740 |
3.28e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 41.23 E-value: 3.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 558 LSEALRKLENSDKEKRQLQKtvaEQDMKMNDMLDRIKHQHREQGSIKcklEEDLQEATKLLEDKREQLKKSKEheklmeg 637
Cdd:PRK12705 32 AKEAERILQEAQKEAEEKLE---AALLEAKELLLRERNQQRQEARRE---REELQREEERLVQKEEQLDARAE------- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 638 ELEALRQEFKKKDKTLKENSRKLEEENENLRAELQCCSTQLESSLNkyntsQQVIQDLNKEIALQKESLMSLQAQLDKAL 717
Cdd:PRK12705 99 KLDNLENQLEEREKALSARELELEELEKQLDNELYRVAGLTPEQAR-----KLLLKLLDAELEEEKAQRVKKIEEEADLE 173
|
170 180
....*....|....*....|....*
gi 767990636 718 QKEK--HYLQTTITKEAYDALSRKS 740
Cdd:PRK12705 174 AERKaqNILAQAMQRIASETASDLS 198
|
|
| Macoilin |
pfam09726 |
Macoilin family; The Macoilin proteins has an N-terminal portion that is composed of 5 ... |
567-795 |
3.34e-03 |
|
Macoilin family; The Macoilin proteins has an N-terminal portion that is composed of 5 trasnmembrane helices, followed by a C-terminal coiled-coil region. Macoilin is a highly conserved protein present in eukaryotes. Macoilin appears to be found in the ER and be involved in the function of neurons.
Pssm-ID: 462859 [Multi-domain] Cd Length: 670 Bit Score: 41.38 E-value: 3.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 567 NSDKEKRQLQKTVAEQDMKM-----NDMLDRIKHQHREQGSIKcKLEEDLQEATKLLEDKREQLKKSKEHEKLMEGELEA 641
Cdd:pfam09726 363 NSKKQKGPGGKSGARHKDPAencipNNQLSKPDALVRLEQDIK-KLKAELQASRQTEQELRSQISSLTSLERSLKSELGQ 441
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 642 LRQefkkkdktlkensrkleeENENLRaelqccsTQLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQLDKALQKEK 721
Cdd:pfam09726 442 LRQ------------------ENDLLQ-------TKLHNAVSAKQKDKQTVQQLEKRLKAEQEARASAEKQLAEEKKRKK 496
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767990636 722 HYLQTTITKEAYDALSRKSaaCQDDLTQALEKLNhvtSETKSLQQSLTQTQEKKAQLE---EEIIAYEERMKklNTE 795
Cdd:pfam09726 497 EEEATAARAVALAAASRGE--CTESLKQRKRELE---SEIKKLTHDIKLKEEQIRELEikvQELRKYKESEK--DTE 566
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
452-669 |
3.96e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 3.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 452 EAECKALQAEVQKLKNS---LEEAKQQ-ERLAGEAPAAQQAAQCKEEAA-----LAGCHLEDTQRKLQkglLLDKQkadt 522
Cdd:COG4913 224 FEAADALVEHFDDLERAheaLEDAREQiELLEPIRELAERYAAARERLAeleylRAALRLWFAQRRLE---LLEAE---- 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 523 IQELQRELQMLQKESSMAEKEQTSNRKRVEELSLELSEA-LRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKhqhreqg 601
Cdd:COG4913 297 LEELRAELARLEAELERLEARLDALREELDELEAQIRGNgGDRLEQLEREIERLERELEERERRRARLEALLA------- 369
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767990636 602 sikcKLEEDLQEATKLLEDKREQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENLRA 669
Cdd:COG4913 370 ----ALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLER 433
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
523-642 |
4.16e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 41.22 E-value: 4.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 523 IQELQRELQMLQKESSMAEKEQtsnrkrvEELSLELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKHQHREQGS 602
Cdd:COG0542 413 LDELERRLEQLEIEKEALKKEQ-------DEASFERLAELRDELAELEEELEALKARWEAEKELIEEIQELKEELEQRYG 485
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 767990636 603 IKCKLEEDLQEATKLLEDKREQLKKS-KEHE--------------KLMEGELEAL 642
Cdd:COG0542 486 KIPELEKELAELEEELAELAPLLREEvTEEDiaevvsrwtgipvgKLLEGEREKL 540
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
548-707 |
5.76e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.53 E-value: 5.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 548 RKRVEELSLELSEALRK--LENSDKEKRQLQKtvaEQDMKMNDMLDRIKHQH----REQGSIKCKLEEDLQEATKLLEDK 621
Cdd:PRK12704 25 RKKIAEAKIKEAEEEAKriLEEAKKEAEAIKK---EALLEAKEEIHKLRNEFekelRERRNELQKLEKRLLQKEENLDRK 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 622 REQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENLraelqccstqleSSLNKYNTSQQVIQDLNKEIAL 701
Cdd:PRK12704 102 LELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERI------------SGLTAEEAKEILLEKVEEEARH 169
|
....*.
gi 767990636 702 QKESLM 707
Cdd:PRK12704 170 EAAVLI 175
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
608-807 |
8.37e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.05 E-value: 8.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 608 EEDLQEATKLLEDKREQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENS---RKLEEENENLRAELQccstQLESSLNK 684
Cdd:PRK03918 164 YKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISselPELREELEKLEKEVK----ELEELKEE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 685 YNTSQQVIQDLNKEIALQKESLMSLQAQLdKALQKEKHYLQTTI--------TKEAYDALSRKSAACQDDLTQALEKLNH 756
Cdd:PRK03918 240 IEELEKELESLEGSKRKLEEKIRELEERI-EELKKEIEELEEKVkelkelkeKAEEYIKLSEFYEEYLDELREIEKRLSR 318
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 767990636 757 VTSETKSLQQSLTQTQEKKAQLEEeiiaYEERMKKLNTELRKLRGFHQESE 807
Cdd:PRK03918 319 LEEEINGIEERIKELEEKEERLEE----LKKKLKELEKRLEELEERHELYE 365
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
452-645 |
8.86e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.28 E-value: 8.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 452 EAECKALQAEVQKLKNSLEEAKQQERLAGEapaaqqaaqckeeaalagcHLEDTQRKLQKgllldkQKADTIQELQRELQ 531
Cdd:COG4913 294 EAELEELRAELARLEAELERLEARLDALRE-------------------ELDELEAQIRG------NGGDRLEQLEREIE 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 532 MLQKEssmaekeqtsnRKRVEELSLELSEALRKLE----NSDKEKRQLQKTVAEQDMKMNDMLDRIKHQHREQGSIKCKL 607
Cdd:COG4913 349 RLERE-----------LEERERRRARLEALLAALGlplpASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDL 417
|
170 180 190
....*....|....*....|....*....|....*...
gi 767990636 608 EEDLQEatklLEDKREQLKKSKeheKLMEGELEALRQE 645
Cdd:COG4913 418 RRELRE----LEAEIASLERRK---SNIPARLLALRDA 448
|
|
| FPP |
pfam05911 |
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant ... |
651-788 |
9.73e-03 |
|
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant proteins that are filament-like. It interacts with the nuclear envelope-associated protein, MAF1, the WPP family pfam13943.
Pssm-ID: 461778 [Multi-domain] Cd Length: 859 Bit Score: 40.04 E-value: 9.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990636 651 KTLKENSRKLEEENENLRAELQCCSTQLESSLNKYNTSQQVIQDLNKEIAL--------------QKESLMSLQAQLDKA 716
Cdd:pfam05911 684 KRLKEEFEQLKSEKENLEVELASCTENLESTKSQLQESEQLIAELRSELASlkesnslaetqlkcMAESYEDLETRLTEL 763
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767990636 717 LQKEKHYLQTTITKEAydALSRKSAACQDDLTQALE-KLNHVTSETKSLQQSLTQTQEKKAQLEEEIIAYEER 788
Cdd:pfam05911 764 EAELNELRQKFEALEV--ELEEEKNCHEELEAKCLElQEQLERNEKKESSNCDADQEDKKLQQEKEITAASEK 834
|
|
| |
