|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
576-1046 |
3.92e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 77.28 E-value: 3.92e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 576 LKLEVEEKKQAMLLLQRALAQQRDLTARRVKETEKALSRQLQRQREHYEATIQR---HLAFIDQLIEDKKVLSEKCEAVV 652
Cdd:COG1196 218 LKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEElrlELEELELELEEAQAEEYELLAEL 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 653 AELKQEDQRCTERVAQAQAQHELEIKKLKELMSATEKARREkwISEKTKKIKEvtvrgLEPEIQKLIARHKQEVRRLKSL 732
Cdd:COG1196 298 ARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEE--LEELEEELEE-----AEEELEEAEAELAEAEEALLEA 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 733 hEAELLQSDERASQRCLRQAEELREQLEREKEALGQQERERARQRQRAELEELRQQLEESSSALTRAL---------RAE 803
Cdd:COG1196 371 -EAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEeeeeealeeAAE 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 804 FEKGREEQERRHQMELNTLKQQLELERQAWEAGRTRKERMSPQEAWLLNREQELRE----------------------EI 861
Cdd:COG1196 450 EEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGflegvkaalllaglrglagavaVL 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 862 RKGRDKEIELVIHRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLV 941
Cdd:COG1196 530 IGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLR 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 942 RQKERA-LEDAQAVNEQLSSERSNLAQVIRQEFEDRLAAS--EEETRQAKAELATLQARQQLELEEVHRRVKTALARKEE 1018
Cdd:COG1196 610 EADARYyVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVtlEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLA 689
|
490 500
....*....|....*....|....*...
gi 767994125 1019 AVSSLRTQHEAAVKRADHLEELLEQHRR 1046
Cdd:COG1196 690 EEELELEEALLAEEEEERELAEAEEERL 717
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
784-1047 |
5.93e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.43 E-value: 5.93e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 784 ELRQQLEESSSALTRALRAEFEKGREEQERRHQmELNTLKQQLELERQAWEAGRTRKErmspqeawllNREQELREEIRK 863
Cdd:COG1196 217 ELKEELKELEAELLLLKLRELEAELEELEAELE-ELEAELEELEAELAELEAELEELR----------LELEELELELEE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 864 GRDKEIELV--IHRLEADMALAKEESEkAAESRIKRLrdkyEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLV 941
Cdd:COG1196 286 AQAEEYELLaeLARLEQDIARLEERRR-ELEERLEEL----EEELAELEEELEELEEELEELEEELEEAEEELEEAEAEL 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 942 RQKERALEDAQAVNEQLSSERSNLAQVIRQEFEDRLAASEEETRQAKAELATLQARQQLELEEvhRRVKTALARKEEAVS 1021
Cdd:COG1196 361 AEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEEL--EELEEALAELEEEEE 438
|
250 260
....*....|....*....|....*.
gi 767994125 1022 SLRTQHEAAVKRADHLEELLEQHRRP 1047
Cdd:COG1196 439 EEEEALEEAAEEEAELEEEEEALLEL 464
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
567-1046 |
2.24e-12 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 71.71 E-value: 2.24e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 567 SEVSTSVMRLKLEVEEKKQAMLLLQRALAQQRDLTARRVKETEKALSRQLQRQREHYEATiQRHLAFIDQLIEDKKVLSE 646
Cdd:PTZ00121 1298 AEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAAD-EAEAAEEKAEAAEKKKEEA 1376
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 647 KCEAVVAELKQEDQRCTERVAQAQAQHELEIKKLKELMSATEKARREKWISEKTKKIKEVtvrglepeiqkliarhKQEV 726
Cdd:PTZ00121 1377 KKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEA----------------KKKA 1440
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 727 RRLKSLHEAELLQSDERASQRCLRQAEELREQLEREKEAlgqqererarqRQRAELEELRQQLEESSSALTRALRAEFEK 806
Cdd:PTZ00121 1441 EEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKA-----------EEAKKADEAKKKAEEAKKKADEAKKAAEAK 1509
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 807 GREEQERRHQMelntlKQQLELERQAWEAGRTRKERMSPQEawllNREQELR--EEIRKGRDKEIELVIHRLEAD--MAL 882
Cdd:PTZ00121 1510 KKADEAKKAEE-----AKKADEAKKAEEAKKADEAKKAEEK----KKADELKkaEELKKAEEKKKAEEAKKAEEDknMAL 1580
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 883 AK-EESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKgQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSE 961
Cdd:PTZ00121 1581 RKaEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAE-ELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEEN 1659
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 962 RSNLAQVIRQEFEDRLAASE----EETRQAKAELATLQARQQLELEEVHRRVKTALARKEEavssLRTQHEAAVKRADHL 1037
Cdd:PTZ00121 1660 KIKAAEEAKKAEEDKKKAEEakkaEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEE----LKKAEEENKIKAEEA 1735
|
....*....
gi 767994125 1038 EELLEQHRR 1046
Cdd:PTZ00121 1736 KKEAEEDKK 1744
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
575-1010 |
2.93e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.12 E-value: 2.93e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 575 RLKLEVEEKKQAMLLLQRALAQQRDLTARRVKETEKALSRQLQRQREhyEATIQRHLAFIDQLIEDKKVLSEKCEAVVAE 654
Cdd:COG1196 341 ELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEE--LLEALRAAAELAAQLEELEEAEEALLERLER 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 655 LKQEDQRCTERVAQAQAQHELEIKKLKELMSATEKARREKWISEKTKKIKEVTVRGLEPEIQKLIARHKQEVRRLKSLHE 734
Cdd:COG1196 419 LEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLE 498
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 735 AELLQSDERASQRCLRQAEELREQLEREKEALGQQERERARQRQRAELEELRQQLEESSSALTRALRAEFEK-GREEQER 813
Cdd:COG1196 499 AEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKaGRATFLP 578
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 814 RHQMELNTLKQQLELERQAWEAGRTRKERMSPQEAWLLNREQELREEIRKGRDKEIELVIHRLEADMALAKEESEKAAES 893
Cdd:COG1196 579 LDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSA 658
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 894 RIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQEF 973
Cdd:COG1196 659 GGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELL 738
|
410 420 430
....*....|....*....|....*....|....*....
gi 767994125 974 EDRLAASEEETRQAKAELATLQARQQLE--LEEVHRRVK 1010
Cdd:COG1196 739 EELLEEEELLEEEALEELPEPPDLEELEreLERLEREIE 777
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
782-1041 |
3.64e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.86 E-value: 3.64e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 782 LEELRQQLEESSSALtRALRAEFEKGREEQERRHQmELNTLKQQLELERQAWEAGRTRKERMSPQEAWLLNREQELREEI 861
Cdd:TIGR02168 693 IAELEKALAELRKEL-EELEEELEQLRKELEELSR-QISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERL 770
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 862 RKGRD--KEIELVIHRLEADMALAKEESeKAAESRIKRLRdkyeAELSELEQSERKLQERCSELKGQLGEAEgenLRLQG 939
Cdd:TIGR02168 771 EEAEEelAEAEAEIEELEAQIEQLKEEL-KALREALDELR----AELTLLNEEAANLRERLESLERRIAATE---RRLED 842
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 940 LVRQKERALEDAQAVNEQLSSERSNLAQVIRQ--EFEDRLAASEEETRQAKAELATLQARQQlELEEVHRRVKTALARKE 1017
Cdd:TIGR02168 843 LEEQIEELSEDIESLAAEIEELEELIEELESEleALLNERASLEEALALLRSELEELSEELR-ELESKRSELRRELEELR 921
|
250 260
....*....|....*....|....
gi 767994125 1018 EAVSSLRTQHEAAVKRADHLEELL 1041
Cdd:TIGR02168 922 EKLAQLELRLEGLEVRIDNLQERL 945
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
594-1042 |
1.16e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.20 E-value: 1.16e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 594 LAQQRD--LTARRVKETEKALSRQLQ-RQREHYEATIQRHLAFIDQLIEDKKVLS---EKCEAVVAELKQEDQRCTERVA 667
Cdd:COG1196 205 LERQAEkaERYRELKEELKELEAELLlLKLRELEAELEELEAELEELEAELEELEaelAELEAELEELRLELEELELELE 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 668 QAQAQHELEIKKLKELmsATEKARREKWISEKTKKIKEvtvrgLEPEIQKLIARHKQEVRRLKslhEAELLQSDERASQR 747
Cdd:COG1196 285 EAQAEEYELLAELARL--EQDIARLEERRRELEERLEE-----LEEELAELEEELEELEEELE---ELEEELEEAEEELE 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 748 CLRQAEELREQLEREKEALGQQERERARQRQRAELEELRQQLEESSSALTRALRAEFEKGREEQERRHQMELNTLKQQLE 827
Cdd:COG1196 355 EAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELE 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 828 LERQAWEAGRTRkermspQEAWLLNREQELREEIRKGRDKEIELVIHRLEADMALAKEESEKAAESRIKRLRDKYEAELS 907
Cdd:COG1196 435 EEEEEEEEALEE------AAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLE 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 908 E-LEQSERKLQERCSELKGQLG------EAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQEFEDRLAAS 980
Cdd:COG1196 509 GvKAALLLAGLRGLAGAVAVLIgveaayEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAAL 588
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767994125 981 EEETRQAKAELATLQARQQLELEEV--HRRVKTALARKEEAVSSLRTQHEAAVKRADHLEELLE 1042
Cdd:COG1196 589 AAALARGAIGAAVDLVASDLREADAryYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLE 652
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
567-1049 |
2.79e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 64.78 E-value: 2.79e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 567 SEVSTSVMRLKLEVEEKKQAMLLLQRALAQQRDLTARRVKETEKALSRQLQRQREHyeatiqrhlafIDQLIEDKKVLSE 646
Cdd:PTZ00121 1374 EEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEE-----------KKKADEAKKKAEE 1442
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 647 KCEAVVAELKQEDQRCTERvAQAQAQhelEIKKLKELMSATEKARREKwisEKTKKIKEVTVRGLEPEIQKLIARHKQEV 726
Cdd:PTZ00121 1443 AKKADEAKKKAEEAKKAEE-AKKKAE---EAKKADEAKKKAEEAKKAD---EAKKKAEEAKKKADEAKKAAEAKKKADEA 1515
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 727 RRLKSLHEAELLQSDERAsqrclRQAEELREQLEREKEALGQQERERARQRQRAELEELRQQLEESSSALTRAlraefEK 806
Cdd:PTZ00121 1516 KKAEEAKKADEAKKAEEA-----KKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKA-----EE 1585
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 807 GREEQERRHQMELntlkqQLELERQAWEAGRTRKERMSPQEAWLLNREQELREEIRKGRDKEIELVihRLEADMALAKEE 886
Cdd:PTZ00121 1586 AKKAEEARIEEVM-----KLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEK--KKAEELKKAEEE 1658
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 887 SE-KAAESRIKRLRDKYEAE-LSELEQSERKLQErcselkgQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSN 964
Cdd:PTZ00121 1659 NKiKAAEEAKKAEEDKKKAEeAKKAEEDEKKAAE-------ALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIK 1731
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 965 LAQVIRQEFEDRLAAseEETRQAKAELATLQARQQLELEEVHRRVKTALARKEEAVSSLRTQHEAAVKRA-----DHLEE 1039
Cdd:PTZ00121 1732 AEEAKKEAEEDKKKA--EEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKikdifDNFAN 1809
|
490
....*....|
gi 767994125 1040 LLEQHRRPTP 1049
Cdd:PTZ00121 1810 IIEGGKEGNL 1819
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
688-1044 |
5.34e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.80 E-value: 5.34e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 688 EKARREKWISEKtKKIKEVTVRGLE-PEIQKLIARHKQEVRRLKSLHEAELLQSDERASQRclrqaEELReqlerekeal 766
Cdd:COG1196 210 EKAERYRELKEE-LKELEAELLLLKlRELEAELEELEAELEELEAELEELEAELAELEAEL-----EELR---------- 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 767 gqqererarqrqrAELEELRQQLEEsssaltralraefekgREEQERRHQMELNTLKQQLELERQAWEAGRTRKERMSPQ 846
Cdd:COG1196 274 -------------LELEELELELEE----------------AQAEEYELLAELARLEQDIARLEERRRELEERLEELEEE 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 847 EAWLLNREQELREEIRkgrdkeielvihRLEADMALAKEESEKAAESRIKRlrdkyEAELSELEQSERKLQERCSELKGQ 926
Cdd:COG1196 325 LAELEEELEELEEELE------------ELEEELEEAEEELEEAEAELAEA-----EEALLEAEAELAEAEEELEELAEE 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 927 LGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQEFEDRLAASEEETRQAKAELATLQARQQLELEEVH 1006
Cdd:COG1196 388 LLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAE 467
|
330 340 350
....*....|....*....|....*....|....*...
gi 767994125 1007 RRVKTALArkEEAVSSLRTQHEAAVKRADHLEELLEQH 1044
Cdd:COG1196 468 LLEEAALL--EAALAELLEELAEAAARLLLLLEAEADY 503
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
782-1045 |
1.27e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.77 E-value: 1.27e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 782 LEELRQQLEESSSALTRaLRAEFEKGREEQERR------HQMELNTLKQQLELERQAWEAGRTRKERMSPQEAWLLNREQ 855
Cdd:TIGR02168 255 LEELTAELQELEEKLEE-LRLEVSELEEEIEELqkelyaLANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLD 333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 856 ELREEIrkgrdKEIELVIHRLEADMALAKEESEKAaesrikrlrdkyEAELSELEQSERKLQERCSELKGQLGEAEGENL 935
Cdd:TIGR02168 334 ELAEEL-----AELEEKLEELKEELESLEAELEEL------------EAELEELESRLEELEEQLETLRSKVAQLELQIA 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 936 RLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQEFEDRLAASEEETRQAKAELATLQARQQLELEEVHRRvktaLAR 1015
Cdd:TIGR02168 397 SLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREE----LEE 472
|
250 260 270
....*....|....*....|....*....|
gi 767994125 1016 KEEAVSSLRTQHEAAVKRADHLEELLEQHR 1045
Cdd:TIGR02168 473 AEQALDAAERELAQLQARLDSLERLQENLE 502
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
610-1046 |
4.78e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 60.46 E-value: 4.78e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 610 KALSRQLQRQREHYEATIQRHlAFIDQLIEDKKVLSEKCEAVVAELKQEDQRCTERVAQAQAqhelEIKKLKELMSATEK 689
Cdd:PRK03918 168 GEVIKEIKRRIERLEKFIKRT-ENIEELIKEKEKELEEVLREINEISSELPELREELEKLEK----EVKELEELKEEIEE 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 690 ARREKWISEKTKKIKEVTVRGLEPEIQKLIARHK---QEVRRLKSLHEAELLQSDERASQRCLRQAEELREQLEREKEAL 766
Cdd:PRK03918 243 LEKELESLEGSKRKLEEKIRELEERIEELKKEIEeleEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 767 gqqererarqrqRAELEELRQQLEESSSAL--TRALRAEFEKGREEQERRHQmELNTLKQQL-ELERQAWEAGRTRKERM 843
Cdd:PRK03918 323 ------------INGIEERIKELEEKEERLeeLKKKLKELEKRLEELEERHE-LYEEAKAKKeELERLKKRLTGLTPEKL 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 844 SPQEAWLLNREQELREEIRKGRDKEIELviHRLEADMALAKEESEKA-----------AESRIKRLRDKYEAELSELEQS 912
Cdd:PRK03918 390 EKELEELEKAKEEIEEEISKITARIGEL--KKEIKELKKAIEELKKAkgkcpvcgrelTEEHRKELLEEYTAELKRIEKE 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 913 ERKLQERCSELKGQLGEAEGENLRLQGLVRQKERAledaqavnEQLSSERSNLAQVIRQEFEdrlaASEEETRQAKAELA 992
Cdd:PRK03918 468 LKEIEEKERKLRKELRELEKVLKKESELIKLKELA--------EQLKELEEKLKKYNLEELE----KKAEEYEKLKEKLI 535
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 767994125 993 TLQARQqleleevhRRVKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQHRR 1046
Cdd:PRK03918 536 KLKGEI--------KSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEE 581
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
676-997 |
7.59e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.07 E-value: 7.59e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 676 EIKKLKELMSATEKARREKwisEKTKKIKEVTVRGLEPEIQKLIARhKQEVRRLKSLHEAELLQSDERASQRCLRQAEEL 755
Cdd:TIGR02168 678 EIEELEEKIEELEEKIAEL---EKALAELRKELEELEEELEQLRKE-LEELSRQISALRKDLARLEAEVEQLEERIAQLS 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 756 REQLEREKEALGQQERERARQRQRAELEELRQQLEESSSALTRALRAEFEKGREEQERRHQMELNTLKQQLELERQAWEA 835
Cdd:TIGR02168 754 KELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRI 833
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 836 GRTRkermspqeawllnREQELREEIRKGRDKEIELVIHRLEaDMALAKEESEKAAESrikrlrdkYEAELSELEQSERK 915
Cdd:TIGR02168 834 AATE-------------RRLEDLEEQIEELSEDIESLAAEIE-ELEELIEELESELEA--------LLNERASLEEALAL 891
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 916 LQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQEFEDRLAASEEETRQAKAELATLQ 995
Cdd:TIGR02168 892 LRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEAR 971
|
..
gi 767994125 996 AR 997
Cdd:TIGR02168 972 RR 973
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
881-1046 |
1.06e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.69 E-value: 1.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 881 ALAKEESEKAAESRIKRLRDkYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSS 960
Cdd:TIGR02168 217 ELKAELRELELALLVLRLEE-LREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALAN 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 961 ERSNLAQVIrQEFEDRLAASEEETRQAKAELATLQARQQLELEEVHRR------VKTALARKEEAVSSLRTQHEAAVKRA 1034
Cdd:TIGR02168 296 EISRLEQQK-QILRERLANLERQLEELEAQLEELESKLDELAEELAELeekleeLKEELESLEAELEELEAELEELESRL 374
|
170
....*....|..
gi 767994125 1035 DHLEELLEQHRR 1046
Cdd:TIGR02168 375 EELEEQLETLRS 386
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
650-1005 |
1.16e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 59.31 E-value: 1.16e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 650 AVVAELKQEDQRCTERVAQAQAQHELEIKKLKELMSATEKARREKWISEKTKKIK----EVTVRGLEPEIQKLIARHKQE 725
Cdd:TIGR02169 163 AGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLkekrEYEGYELLKEKEALERQKEAI 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 726 VRRLKSLhEAELLQSDERASQRCLRQAEELREQLEREKE--ALGQQERErarqrqraeleELRQQLEESSSALTRALRAE 803
Cdd:TIGR02169 243 ERQLASL-EEELEKLTEEISELEKRLEEIEQLLEELNKKikDLGEEEQL-----------RVKEKIGELEAEIASLERSI 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 804 FEKGREEQ---ERRHQMELNTLKQQLELERQAWEAGRTRKERMSpqeawLLNREQELREEIRKGRDKeielvIHRLEADM 880
Cdd:TIGR02169 311 AEKERELEdaeERLAKLEAEIDKLLAEIEELEREIEEERKRRDK-----LTEEYAELKEELEDLRAE-----LEEVDKEF 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 881 ALAKEESeKAAESRIkrlrDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSS 960
Cdd:TIGR02169 381 AETRDEL-KDYREKL----EKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEW 455
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 767994125 961 ERSNLAQV---IRQEFEDR---LAASEEETRQAKAELATLQARQQLELEEV 1005
Cdd:TIGR02169 456 KLEQLAADlskYEQELYDLkeeYDRVEKELSKLQRELAEAEAQARASEERV 506
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
537-1046 |
3.17e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 58.23 E-value: 3.17e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 537 DEMEKSGQDQLDSQQEGWVPEAGPGPLELGSEVSTSvmrlklevEEKKQAMLLLQRALAQQRDLTARRVKETEKAL-SRQ 615
Cdd:PTZ00121 1082 DAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKA--------EEAKKKAEDARKAEEARKAEDARKAEEARKAEdAKR 1153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 616 LQRQREHYEAtiqrHLAFIDQLIEDKKVLSEKCEAVVAElKQEDQRCTERVAQAQAQHELE-IKKLKELMSATEKARREK 694
Cdd:PTZ00121 1154 VEIARKAEDA----RKAEEARKAEDAKKAEAARKAEEVR-KAEELRKAEDARKAEAARKAEeERKAEEARKAEDAKKAEA 1228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 695 WISEKTKKIKEVTVRGLEPEIQKLIARHKQEVRRLKSLHEAELLQSDERASQRCLRQAEELREQLEREK-EALGQQERER 773
Cdd:PTZ00121 1229 VKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKaEEKKKADEAK 1308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 774 ARQRQRAELEELRQQLEESSSALTRALRAEFEKGREEQERRHQMElnTLKQQLELERQAWEAGRTRKERMSPQEAWLLNR 853
Cdd:PTZ00121 1309 KKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAE--AAADEAEAAEEKAEAAEKKKEEAKKKADAAKKK 1386
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 854 EQELR--EEIRKGRDKEielvihRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKlqeRCSELKGQLGEA- 930
Cdd:PTZ00121 1387 AEEKKkaDEAKKKAEED------KKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAK---KADEAKKKAEEAk 1457
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 931 EGENLRLQGlvRQKERALEDAQAVNEQLSSERSNLAQVIRQEFEDRLAASEEETRQAKAELATLQARQQLELEEVHRRVK 1010
Cdd:PTZ00121 1458 KAEEAKKKA--EEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKK 1535
|
490 500 510
....*....|....*....|....*....|....*..
gi 767994125 1011 TALARKEEAVSSLRTQHEA-AVKRADHLEElLEQHRR 1046
Cdd:PTZ00121 1536 ADEAKKAEEKKKADELKKAeELKKAEEKKK-AEEAKK 1571
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
584-1046 |
7.05e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 56.70 E-value: 7.05e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 584 KQAMLLLQRALAQQRDLTARRVKETEKALsRQLQRQREHYEATIQRhLAFIDQLIEDKKVLSEKCEAVVAELKQEDQRCT 663
Cdd:COG4717 52 EKEADELFKPQGRKPELNLKELKELEEEL-KEAEEKEEEYAELQEE-LEELEEELEELEAELEELREELEKLEKLLQLLP 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 664 ERVAQAQAQHELE--IKKLKELmsateKARREKWISektkkiKEVTVRGLEPEIQKLiARHKQEVRRLKSLHEAELLQSD 741
Cdd:COG4717 130 LYQELEALEAELAelPERLEEL-----EERLEELRE------LEEELEELEAELAEL-QEELEELLEQLSLATEEELQDL 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 742 ERASQRCLRQAEELREQLEREKEALGQQERERARQRQRAELEELRQQLEE-SSSALTRALRAEFE--------------- 805
Cdd:COG4717 198 AEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEaRLLLLIAAALLALLglggsllsliltiag 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 806 ---------------KGREEQERRHQM-ELNTLKQQLELERQAWEAGRTR---KERMSPQEA-WLLNREQELREEIRKGR 865
Cdd:COG4717 278 vlflvlgllallfllLAREKASLGKEAeELQALPALEELEEEELEELLAAlglPPDLSPEELlELLDRIEELQELLREAE 357
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 866 DKEIELVIHRLE----ADMALAKEESEKAAESRIKRLRDKyeaelseleqseRKLQERCSELKGQLGEAEGENLRLQglv 941
Cdd:COG4717 358 ELEEELQLEELEqeiaALLAEAGVEDEEELRAALEQAEEY------------QELKEELEELEEQLEELLGELEELL--- 422
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 942 rqkerALEDAQAVNEQLssersnlaqvirQEFEDRLAASEEETRQAKAELATLQAR-QQLELEEVHRRVKTALARKEEAV 1020
Cdd:COG4717 423 -----EALDEEELEEEL------------EELEEELEELEEELEELREELAELEAElEQLEEDGELAELLQELEELKAEL 485
|
490 500
....*....|....*....|....*.
gi 767994125 1021 SSLRTQHEAAVKRADHLEELLEQHRR 1046
Cdd:COG4717 486 RELAEEWAALKLALELLEEAREEYRE 511
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
568-971 |
7.16e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.00 E-value: 7.16e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 568 EVSTSVMRLKLEVEEKKQAMLLLQRALAQQ---RDLTARRVKETEKALSRQLQRQREHYEAtIQRHLAFIDQLIEDKKVL 644
Cdd:TIGR02169 181 EVEENIERLDLIIDEKRQQLERLRREREKAeryQALLKEKREYEGYELLKEKEALERQKEA-IERQLASLEEELEKLTEE 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 645 SEKCEAVVAELKQEDQRCTERVAQAQAQHELEIK-KLKELMSATEKARREkwISEKTKKIKEvtvrgLEPEIQKLIArhk 723
Cdd:TIGR02169 260 ISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKeKIGELEAEIASLERS--IAEKERELED-----AEERLAKLEA--- 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 724 qEVRRLKSLHEaellQSDERASQRCLRQAEELREQLEREKEalgqqererarqrqraeLEELRQQLEESSSALtRALRAE 803
Cdd:TIGR02169 330 -EIDKLLAEIE----ELEREIEEERKRRDKLTEEYAELKEE-----------------LEDLRAELEEVDKEF-AETRDE 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 804 FEKGREEQERrHQMELNTLKQqlELERQAWEAGRTRKERmspqeawllnreQELREEIRKGRDKEIELVIHRLEADMALA 883
Cdd:TIGR02169 387 LKDYREKLEK-LKREINELKR--ELDRLQEELQRLSEEL------------ADLNAAIAGIEAKINELEEEKEDKALEIK 451
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 884 KEESEKaaeSRIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGEnlrlqglVRQKERALEDAQAVNEQLSSERS 963
Cdd:TIGR02169 452 KQEWKL---EQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQ-------ARASEERVRGGRAVEEVLKASIQ 521
|
....*...
gi 767994125 964 NLAQVIRQ 971
Cdd:TIGR02169 522 GVHGTVAQ 529
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
579-1032 |
3.18e-07 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 54.84 E-value: 3.18e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 579 EVEEKKQAMLLLQRALAQQRDLTARRVKETEKALSRQ---LQRQREHYEATIQRHLAFIDQLIEDKKVLSEKCEAVVAEL 655
Cdd:pfam12128 277 RQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAAdaaVAKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQSEL 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 656 KQEDQRC---TERVAQAQAQHELEIKKLKElmsatEKARREKWISEKTKKIKEVTVRGLEPE---IQKL----------- 718
Cdd:pfam12128 357 ENLEERLkalTGKHQDVTAKYNRRRSKIKE-----QNNRDIAGIKDKLAKIREARDRQLAVAeddLQALeselreqleag 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 719 IARHKQEVRRLKS-LHEAELLQSDERASQRCLRQAEELREQLEREKEALGQQERERARQRQRaeLEELRQQLEESSSALT 797
Cdd:pfam12128 432 KLEFNEEEYRLKSrLGELKLRLNQATATPELLLQLENFDERIERAREEQEAANAEVERLQSE--LRQARKRRDQASEALR 509
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 798 RALRAEFEKGREEQERRHQM--ELNTLKQQLELERQAWEAGRTRkermspqeawLLNREQELREEIRKGRDKEI---ELV 872
Cdd:pfam12128 510 QASRRLEERQSALDELELQLfpQAGTLLHFLRKEAPDWEQSIGK----------VISPELLHRTDLDPEVWDGSvggELN 579
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 873 IHRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRlqglvrqKERALEDAQ 952
Cdd:pfam12128 580 LYGVKLDLKRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETF-------ARTALKNAR 652
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 953 AVNEQLSSERSNLAQVIRQEFEDRLAASEEETRQAKAELATLQARQQLELEEVHRRVKTA------------------LA 1014
Cdd:pfam12128 653 LDLRRLFDEKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREArtekqaywqvvegaldaqLA 732
|
490
....*....|....*...
gi 767994125 1015 RKEEAVSSLRTQHEAAVK 1032
Cdd:pfam12128 733 LLKAAIAARRSGAKAELK 750
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
850-1038 |
3.76e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.54 E-value: 3.76e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 850 LLNREQELREEIRKGRDK--EIELVIHRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKGQL 927
Cdd:COG4913 253 LLEPIRELAERYAAARERlaELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQI 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 928 GEAEGENL-RLQGLVRQKERALEDAQAvneqlssERSNLAQVIRQefedrLAASEEETRQAKAELATLQARQQLELEEVH 1006
Cdd:COG4913 333 RGNGGDRLeQLEREIERLERELEERER-------RRARLEALLAA-----LGLPLPASAEEFAALRAEAAALLEALEEEL 400
|
170 180 190
....*....|....*....|....*....|..
gi 767994125 1007 RRVKTALARKEEAVSSLRTQHEAAVKRADHLE 1038
Cdd:COG4913 401 EALEEALAEAEAALRDLRRELRELEAEIASLE 432
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
578-1046 |
5.44e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 53.97 E-value: 5.44e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 578 LEVEEKKQAMLLLQRALAQQRdltaRRVKETEKALSRQLQRQREHYEAT-------IQRHLAFIDQLieDKKVLSEkcEA 650
Cdd:pfam15921 113 IDLQTKLQEMQMERDAMADIR----RRESQSQEDLRNQLQNTVHELEAAkclkedmLEDSNTQIEQL--RKMMLSH--EG 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 651 VVAELKQEDQRCTERVAQAQAQHE-LEIKKLKELMSATEKARRE--KWISEKTKKIKEV--TVRGLEPE----IQKLIAR 721
Cdd:pfam15921 185 VLQEIRSILVDFEEASGKKIYEHDsMSTMHFRSLGSAISKILREldTEISYLKGRIFPVedQLEALKSEsqnkIELLLQQ 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 722 HKQEVRRLKSLHEAELLQSDERASQrCLRQAEELREQLEREKEalgqqereRARQRQRAELEELrQQLEESSSALTRALR 801
Cdd:pfam15921 265 HQDRIEQLISEHEVEITGLTEKASS-ARSQANSIQSQLEIIQE--------QARNQNSMYMRQL-SDLESTVSQLRSELR 334
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 802 aefekgreEQERRHQMELNTLKQQLELERQAWEAGRTRKERMSPQEAWLLNREQELREEIrkgrdkeielviHRLEADMA 881
Cdd:pfam15921 335 --------EAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADL------------HKREKELS 394
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 882 LAKEESekaaesriKRLRDKYEAELSELEQSERKLQERCSE-------LKGQLGEAEGENLRLQGLVRQKERALEDAQAV 954
Cdd:pfam15921 395 LEKEQN--------KRLWDRDTGNSITIDHLRRELDDRNMEvqrlealLKAMKSECQGQMERQMAAIQGKNESLEKVSSL 466
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 955 NEQLSSERSNLAQVIRQ--------EFEDR----LAASEEETRQA----KAELATLQARQQLELEEV--------HRR-- 1008
Cdd:pfam15921 467 TAQLESTKEMLRKVVEEltakkmtlESSERtvsdLTASLQEKERAieatNAEITKLRSRVDLKLQELqhlknegdHLRnv 546
|
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 767994125 1009 ------VKTALARKEEAVSSLRTQHEaavkradHLEELLEQHRR 1046
Cdd:pfam15921 547 qteceaLKLQMAEKDKVIEILRQQIE-------NMTQLVGQHGR 583
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
567-1043 |
5.54e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.91 E-value: 5.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 567 SEVSTSVMRLKLEVEEKKQAMLLLQRAL----AQQRDLTaRRVKETEKALsRQLQRQREHYEATIQRHLAFIDQLIEDKK 642
Cdd:TIGR02168 263 QELEEKLEELRLEVSELEEEIEELQKELyalaNEISRLE-QQKQILRERL-ANLERQLEELEAQLEELESKLDELAEELA 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 643 -------VLSEKCEAVVAELK---------------QEDQRCTERVAQAQAQHEL-----EIKKLKELMSATEKaRREKW 695
Cdd:TIGR02168 341 eleekleELKEELESLEAELEeleaeleelesrleeLEEQLETLRSKVAQLELQIaslnnEIERLEARLERLED-RRERL 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 696 ISEK--------TKKIKEV--TVRGLEPEIQKLIARHKQEVRRLKSLHEA-ELLQSDERASQRCLRQAEELREQLEREKE 764
Cdd:TIGR02168 420 QQEIeellkkleEAELKELqaELEELEEELEELQEELERLEEALEELREElEEAEQALDAAERELAQLQARLDSLERLQE 499
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 765 AL-GQQERERARQRQRAELEELRQQL-------EESSSALTRALRA-----------------EFEKgREEQERRHQMEL 819
Cdd:TIGR02168 500 NLeGFSEGVKALLKNQSGLSGILGVLselisvdEGYEAAIEAALGGrlqavvvenlnaakkaiAFLK-QNELGRVTFLPL 578
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 820 NTLKQQL----ELERQAWEAG--------RTRKERMSPQEAWLLNR---EQELREEIRKGRDKEIELVIHRLEADMALAK 884
Cdd:TIGR02168 579 DSIKGTEiqgnDREILKNIEGflgvakdlVKFDPKLRKALSYLLGGvlvVDDLDNALELAKKLRPGYRIVTLDGDLVRPG 658
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 885 ----EESEKAAESRIKRlrdkyEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDA--------- 951
Cdd:TIGR02168 659 gvitGGSAKTNSSILER-----RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELsrqisalrk 733
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 952 ------------QAVNEQLSSERSNLAQViRQEFEDRLAASEEETRQAKAELATLQA-------------RQQLELEEVH 1006
Cdd:TIGR02168 734 dlarleaeveqlEERIAQLSKELTELEAE-IEELEERLEEAEEELAEAEAEIEELEAqieqlkeelkalrEALDELRAEL 812
|
570 580 590
....*....|....*....|....*....|....*..
gi 767994125 1007 RRVKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQ 1043
Cdd:TIGR02168 813 TLLNEEAANLRERLESLERRIAATERRLEDLEEQIEE 849
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
563-919 |
8.90e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 53.44 E-value: 8.90e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 563 LELGSEVSTSVMRLKLEVEEKKQAMLLLQRALAQQRDLTARRVKETEKALSRQLQRQREHYEATIQRHLAFIDQLIEDKK 642
Cdd:pfam02463 642 KAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEE 721
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 643 VLSEKCEAVVAELKQEDQRCTERVAQAQA-QHELEIKKLKELMSATEKARREKWISEKTKKIKEVTVRGLEPEIQKLIAR 721
Cdd:pfam02463 722 LLADRVQEAQDKINEELKLLKQKIDEEEEeEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEE 801
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 722 HKQEVRRLKSLHEAELLQSDERASQRCLRQAEELREQLEREKEALGQQERERARQRQRAELEELRQQLEESS-----SAL 796
Cdd:pfam02463 802 ELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLlkeeeLEE 881
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 797 TRALRAEFEKGREEQERRHQMELNTLKQQLELERQAWEAGRTRKERMSPQEAWLLNREQELREEIRKGRDKEIELVIHRL 876
Cdd:pfam02463 882 QKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEER 961
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 767994125 877 EADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQER 919
Cdd:pfam02463 962 NKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEK 1004
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
593-1043 |
2.10e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 51.96 E-value: 2.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 593 ALAQQRDLTARRVKETEKALSRQLQRQREHyEATIQRHLAFIDQLIEDKKVLSEKceavVAELKQEDQRCTERVAQAQAQ 672
Cdd:PRK02224 311 AVEARREELEDRDEELRDRLEECRVAAQAH-NEEAESLREDADDLEERAEELREE----AAELESELEEAREAVEDRREE 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 673 HELEIKKLKELMSATEKArrekwisektkkikEVTVRGLEPEIQKLIARHKQEVRRLKSLhEAELLQSDER-ASQRCLRQ 751
Cdd:PRK02224 386 IEELEEEIEELRERFGDA--------------PVDLGNAEDFLEELREERDELREREAEL-EATLRTARERvEEAEALLE 450
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 752 AEELREQLEREKE---ALGQQERERARQRQRAELEELRQQLEESSSALTRALRAEfekgreEQERRhqmeLNTLKQQLEL 828
Cdd:PRK02224 451 AGKCPECGQPVEGsphVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLV------EAEDR----IERLEERRED 520
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 829 ERQAWEAGRTRKERMSPQEAWLLNREQELREEIRKGRDKEIELVIHRLEADMALAKEESEKAA-ESRIKRLrDKYEAELS 907
Cdd:PRK02224 521 LEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAElKERIESL-ERIRTLLA 599
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 908 ELEQSERKLQERCSELKGQlgeAEGENLRLQGLVRQKERALEDAQAVNEqlssERSNLAQVIRQEFEDRLAASEEETRQA 987
Cdd:PRK02224 600 AIADAEDEIERLREKREAL---AELNDERRERLAEKRERKRELEAEFDE----ARIEEAREDKERAEEYLEQVEEKLDEL 672
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 767994125 988 KAELATLQARQQLeleevhrrVKTALARKEEavssLRTQHEAAVKRADHLEELLEQ 1043
Cdd:PRK02224 673 REERDDLQAEIGA--------VENELEELEE----LRERREALENRVEALEALYDE 716
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
850-1046 |
3.43e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.53 E-value: 3.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 850 LLNREQELREEIRKGRDKEIELV--IHRLEADMALAKEEsEKAAESRIKRLrdkyEAELSELEQSERKLQERCSELKGQL 927
Cdd:COG4942 32 LQQEIAELEKELAALKKEEKALLkqLAALERRIAALARR-IRALEQELAAL----EAELAELEKEIAELRAELEAQKEEL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 928 GE------AEGENLRLQGLVRQKE-RALEDAQAVNEQLSSERSNLAQVIRQEFEdRLAASEEETRQAKAELATL---QAR 997
Cdd:COG4942 107 AEllralyRLGRQPPLALLLSPEDfLDAVRRLQYLKYLAPARREQAEELRADLA-ELAALRAELEAERAELEALlaeLEE 185
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 767994125 998 QQLELEEVHRRVKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQHRR 1046
Cdd:COG4942 186 ERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
801-1023 |
4.88e-06 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 50.51 E-value: 4.88e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 801 RAEFEKGREEQERRHQMELNT-LKQQLELERQAWEAGRTRKERMSPQEAwllNREQELREEIRKGRDKEielvihrLEAD 879
Cdd:pfam17380 352 RIRQEERKRELERIRQEEIAMeISRMRELERLQMERQQKNERVRQELEA---ARKVKILEEERQRKIQQ-------QKVE 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 880 MALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLS 959
Cdd:pfam17380 422 MEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKEL 501
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767994125 960 SER-------SNLAQVIRQEFEDRLAASEEETRQAKAElatLQARQQLELEEvHRRVKTALARKEEAVSSL 1023
Cdd:pfam17380 502 EERkqamieeERKRKLLEKEMEERQKAIYEEERRREAE---EERRKQQEMEE-RRRIQEQMRKATEERSRL 568
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
849-1046 |
5.10e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.83 E-value: 5.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 849 WLLNREQELREEIRKGRDKEIElvihRLEADMALAKEeseKAAESRIKRlrDKYEAELSELEQSERKLQERCSELKGQLG 928
Cdd:TIGR02168 659 GVITGGSAKTNSSILERRREIE----ELEEKIEELEE---KIAELEKAL--AELRKELEELEEELEQLRKELEELSRQIS 729
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 929 EAEGENLRLqglvRQKERALEDAQAvneQLSSERSNLAQViRQEFEDRLAASEEETRQAKAELATLQARQQleleevhrR 1008
Cdd:TIGR02168 730 ALRKDLARL----EAEVEQLEERIA---QLSKELTELEAE-IEELEERLEEAEEELAEAEAEIEELEAQIE--------Q 793
|
170 180 190
....*....|....*....|....*....|....*...
gi 767994125 1009 VKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQHRR 1046
Cdd:TIGR02168 794 LKEELKALREALDELRAELTLLNEEAANLRERLESLER 831
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
575-1046 |
5.59e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.45 E-value: 5.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 575 RLKLEVEEKKQAMLLLQRALAQQRDLTARRVKETEKALSR--QLQRQREHYEATIQRHLAFIDQLIEDKKVLS------- 645
Cdd:PRK03918 245 KELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKElkELKEKAEEYIKLSEFYEEYLDELREIEKRLSrleeein 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 646 ---------EKCEAVVAELKQEDQRCTERVAQAQAQHEL--EIKKLKELMSATEKARREKWISEKTKKIKEVTVRG--LE 712
Cdd:PRK03918 325 gieerikelEEKEERLEELKKKLKELEKRLEELEERHELyeEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKeeIE 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 713 PEIQKLIARHKQEVRRLKSLHEA-ELLQSDERASQRCLRQAEELREQLEREKEALGQQERERARQRQRAELEELRQQLEE 791
Cdd:PRK03918 405 EEISKITARIGELKKEIKELKKAiEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRE 484
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 792 SSSALTRALRAEFEKGREEQERRHQMELNtlKQQLELERQAWEAGRTRKERMSPQEAWLLNREQEL-REEIRKGRDKEIE 870
Cdd:PRK03918 485 LEKVLKKESELIKLKELAEQLKELEEKLK--KYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELeKLEELKKKLAELE 562
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 871 LVIHRLEADMA-LAKE------ESEKAAESRIKRLRDKYEaELSELEQSERKLQERCSELKgqlgeaegenlRLQGLVRQ 943
Cdd:PRK03918 563 KKLDELEEELAeLLKEleelgfESVEELEERLKELEPFYN-EYLELKDAEKELEREEKELK-----------KLEEELDK 630
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 944 KERALEDAQAVNEQLSSERSNLAQVIRQEFEDRLaasEEETRQAKAELATLQARqqleLEEVHRRVKTA------LARKE 1017
Cdd:PRK03918 631 AFEELAETEKRLEELRKELEELEKKYSEEEYEEL---REEYLELSRELAGLRAE----LEELEKRREEIkktlekLKEEL 703
|
490 500
....*....|....*....|....*....
gi 767994125 1018 EAVSSLRTQHEAAVKRADHLEELLEQHRR 1046
Cdd:PRK03918 704 EEREKAKKELEKLEKALERVEELREKVKK 732
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
574-1033 |
6.20e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 50.56 E-value: 6.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 574 MRLKLEVEEKKQAMLLLQRALAQQRDLTARRVKETEKALSRQLQRQREHYEATIQRHLAFI-------DQLIEDKKVLSE 646
Cdd:pfam01576 80 LESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDIllledqnSKLSKERKLLEE 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 647 KCEAVVAELKQEDQRcTERVAQAQAQHELEIKKLKELMSATEKARREkwiSEKTKKIKEvtvrGLEPEIQKLIARHKQEV 726
Cdd:pfam01576 160 RISEFTSNLAEEEEK-AKSLSKLKNKHEAMISDLEERLKKEEKGRQE---LEKAKRKLE----GESTDLQEQIAELQAQI 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 727 RRLK---SLHEAELLQSDERASQRCLRQAEELREQLEREKEALGQQERERARQRQRAELEELRQQLEESSSALTRALRAE 803
Cdd:pfam01576 232 AELRaqlAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELEDT 311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 804 FEKGREEQERRHQ--MELNTLKQQLELERQAWEAgrtRKERMSPQEAWLLNREQELREEIRKGRdKEIELVIHRLEAD-- 879
Cdd:pfam01576 312 LDTTAAQQELRSKreQEVTELKKALEEETRSHEA---QLQEMRQKHTQALEELTEQLEQAKRNK-ANLEKAKQALESEna 387
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 880 --------MALAKEESE---KAAESRIKRLRDKY-EAELSELEQSER--KLQERCSELKGQLGEAEGENLRLQGLVRQKE 945
Cdd:pfam01576 388 elqaelrtLQQAKQDSEhkrKKLEGQLQELQARLsESERQRAELAEKlsKLQSELESVSSLLNEAEGKNIKLSKDVSSLE 467
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 946 RALEDAQAVNEQLSSERSNLAQVIRQEFEDR------LAASEEETRQAKAELATLQArQQLELEEVHRRVKTALARKEEA 1019
Cdd:pfam01576 468 SQLQDTQELLQEETRQKLNLSTRLRQLEDERnslqeqLEEEEEAKRNVERQLSTLQA-QLSDMKKKLEEDAGTLEALEEG 546
|
490
....*....|....
gi 767994125 1020 VSSLRTQHEAAVKR 1033
Cdd:pfam01576 547 KKRLQRELEALTQQ 560
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
782-993 |
6.83e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.76 E-value: 6.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 782 LEELRQQLEESSSAL--TRALRAEFEKGREEQERRhqmeLNTLKQQLELERQAWEAGRTRKERMSPQEAWLLNREQELRE 859
Cdd:COG4942 29 LEQLQQEIAELEKELaaLKKEEKALLKQLAALERR----IAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 860 EI--------RKGRDKEIELVIHRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAE 931
Cdd:COG4942 105 ELaellralyRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELE 184
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767994125 932 GENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQvIRQEFEDRLAASEEETRQAKAELAT 993
Cdd:COG4942 185 EERAALEALKAERQKLLARLEKELAELAAELAELQQ-EAEELEALIARLEAEAAAAAERTPA 245
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
782-1046 |
9.04e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 49.84 E-value: 9.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 782 LEELRQQLEESSSALTRALRAeFEKGREEQER---RHQMELNTLKQQLELERQAWEAGRTR-----KERMSPQEAWLLNR 853
Cdd:pfam12128 627 LVQANGELEKASREETFARTA-LKNARLDLRRlfdEKQSEKDKKNKALAERKDSANERLNSleaqlKQLDKKHQAWLEEQ 705
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 854 EQELReEIRKGRDKEIELVIHRLEADMALAKEESEK---AAESRIKRLRDKYEAELSELEQSERKLQERcselkgqlgEA 930
Cdd:pfam12128 706 KEQKR-EARTEKQAYWQVVEGALDAQLALLKAAIAArrsGAKAELKALETWYKRDLASLGVDPDVIAKL---------KR 775
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 931 EGENL--RLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQ------EFEDRLAASEEETRQAKAELAT---LQARQQ 999
Cdd:pfam12128 776 EIRTLerKIERIAVRRQEVLRYFDWYQETWLQRRPRLATQLSNieraisELQQQLARLIADTKLRRAKLEMerkASEKQQ 855
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 767994125 1000 LELEEVHRRVK---TALARKEEAVSSLRTQHEAAvKRADHLEELLEQHRR 1046
Cdd:pfam12128 856 VRLSENLRGLRcemSKLATLKEDANSEQAQGSIG-ERLAQLEDLKLKRDY 904
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
567-976 |
1.56e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.00 E-value: 1.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 567 SEVSTSVMRLKLEVEEKKQAMLLLQRALAQQRDLtarrvkETEKALSRQLQRQREHYEAtIQRHLAFIDQLIEDKKVLSE 646
Cdd:COG4717 98 EELEEELEELEAELEELREELEKLEKLLQLLPLY------QELEALEAELAELPERLEE-LEERLEELRELEEELEELEA 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 647 KCEAVVAELKQEDQRCTERVAQAQAQHELEIKKLKELMSA--TEKARREKWISEKTKKIKEVTVRGLEPEIQKLIARHKQ 724
Cdd:COG4717 171 ELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAEleEELEEAQEELEELEEELEQLENELEAAALEERLKEARL 250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 725 EVRRLKSLHEAELLQSDERASQR-------------CLRQAEELREQLEREKEALGQQERERARQRQRAELEELRQQLEE 791
Cdd:COG4717 251 LLLIAAALLALLGLGGSLLSLILtiagvlflvlgllALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGL 330
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 792 SSSALTRALRAEFEKGREEQERRHQMElnTLKQQLELERQAWEAGRTRKERMSPQEAWLLNREQELREEIRKgrDKEIEL 871
Cdd:COG4717 331 PPDLSPEELLELLDRIEELQELLREAE--ELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQEL--KEELEE 406
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 872 VIHRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENlRLQGLVRQKERALEDA 951
Cdd:COG4717 407 LEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDG-ELAELLQELEELKAEL 485
|
410 420
....*....|....*....|....*..
gi 767994125 952 QAVNEQLSSER--SNLAQVIRQEFEDR 976
Cdd:COG4717 486 RELAEEWAALKlaLELLEEAREEYREE 512
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
782-1044 |
1.60e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 49.19 E-value: 1.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 782 LEELRQQLEESSSAltRALRAEFEKGREEQERRHQMELNTLKQQLELERQAWEAGRTR-------KERMSPQEAWL---- 850
Cdd:PRK04863 357 LEELEERLEEQNEV--VEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRaiqyqqaVQALERAKQLCglpd 434
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 851 --LNREQELREEIRkgrDKEIELVIHRLEADMAL-----AKEESEKAAESrIKRLRDKYEAE---------LSELEqSER 914
Cdd:PRK04863 435 ltADNAEDWLEEFQ---AKEQEATEELLSLEQKLsvaqaAHSQFEQAYQL-VRKIAGEVSRSeawdvarelLRRLR-EQR 509
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 915 KLQERCSELKGQLGEAEGEnLRLQglvRQKERALEDA-QAVNEQLSSErsnlaqvirQEFEDRLAASEEETRQAKAELAT 993
Cdd:PRK04863 510 HLAEQLQQLRMRLSELEQR-LRQQ---QRAERLLAEFcKRLGKNLDDE---------DELEQLQEELEARLESLSESVSE 576
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 994 LQARQ---QLELEEVHRRVKTALARK------EEAVSSLRTQHEAAVKRADHLEELLEQH 1044
Cdd:PRK04863 577 ARERRmalRQQLEQLQARIQRLAARApawlaaQDALARLREQSGEEFEDSQDVTEYMQQL 636
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
782-1043 |
1.88e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.91 E-value: 1.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 782 LEELRQQLEEsssaLTRALRAEFEKGREEQERRHQM--ELNTLKQQLELERQAWEAGRTRKERMSPQEAWLLNREQELRE 859
Cdd:TIGR02169 676 LQRLRERLEG----LKRELSSLQSELRRIENRLDELsqELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 860 EIRKGRD--KEIELVIHRLEADMALAKEESE----KAAESRIKRLRDKY----------EAELSELEQSERKLQERCSEL 923
Cdd:TIGR02169 752 EIENVKSelKELEARIEELEEDLHKLEEALNdleaRLSHSRIPEIQAELskleeevsriEARLREIEQKLNRLTLEKEYL 831
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 924 KGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRqEFEDRLAASEEETRQAKAELATLQARQQlele 1003
Cdd:TIGR02169 832 EKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALR-DLESRLGDLKKERDELEAQLRELERKIE---- 906
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 767994125 1004 evhrRVKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQ 1043
Cdd:TIGR02169 907 ----ELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGE 942
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
649-996 |
3.37e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.14 E-value: 3.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 649 EAVVAELKQEDQRCTERVAQAQAQHELEIKKLKELMSATEKARREkwISEKTKKIKEVTVRG--LEPEIQKLIARHKQEV 726
Cdd:TIGR02169 666 ILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQE--LSDASRKIGEIEKEIeqLEQEEEKLKERLEELE 743
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 727 RRLKSLHEAelLQSDERASQRCLRQAEELREQLEREKEALGQQERERAR------QRQRAELEELRQQLEESSSALTRAL 800
Cdd:TIGR02169 744 EDLSSLEQE--IENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHsripeiQAELSKLEEEVSRIEARLREIEQKL 821
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 801 -RAEFEKGREEQERRH-QMELNTLKQQLELERQAWEAGRTRKERMSPQEAWLLNREQELREEiRKGRDKEIElvihRLEA 878
Cdd:TIGR02169 822 nRLTLEKEYLEKEIQElQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESR-LGDLKKERD----ELEA 896
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 879 DMalakeeseKAAESRIKRLRDKYEaelseleqserKLQERCSELKGQLGEAEGENLRLQGLVRQ------KERALEDAQ 952
Cdd:TIGR02169 897 QL--------RELERKIEELEAQIE-----------KKRKRLSELKAKLEALEEELSEIEDPKGEdeeipeEELSLEDVQ 957
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 767994125 953 AVNEQLSSERSNLAQV---IRQEFEDRLAASEEetrqAKAELATLQA 996
Cdd:TIGR02169 958 AELQRVEEEIRALEPVnmlAIQEYEEVLKRLDE----LKEKRAKLEE 1000
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
712-983 |
3.66e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.99 E-value: 3.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 712 EPEIQKLIARHKQEVRRLKSLHEA--------ELLQSDERASQRcLRQAEELREQLEREKEALGQQERERARQRQRAELE 783
Cdd:COG4913 220 EPDTFEAADALVEHFDDLERAHEAledareqiELLEPIRELAER-YAAARERLAELEYLRAALRLWFAQRRLELLEAELE 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 784 ELRQQLEESssaltralraefekgrEEQERRHQMELNTLKQQL-ELERQAWEAGrtrkermspqeawlLNREQELREEIR 862
Cdd:COG4913 299 ELRAELARL----------------EAELERLEARLDALREELdELEAQIRGNG--------------GDRLEQLEREIE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 863 kGRDKEIELVIHRLEADMALAK--EESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKGQLgeaegenlrlqgl 940
Cdd:COG4913 349 -RLERELEERERRRARLEALLAalGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAAL------------- 414
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 767994125 941 vRQKERALEDAQAVNEQLSSERSNL---AQVIRQEFEDRLAASEEE 983
Cdd:COG4913 415 -RDLRRELRELEAEIASLERRKSNIparLLALRDALAEALGLDEAE 459
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
581-964 |
5.49e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.44 E-value: 5.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 581 EEKKQAMLLLQRALAQQRDLTARRVKETEKA-LSRQLQRQREHYEATIQRHLAFIDQLIEDKKVLSEKCEAVVAELKQED 659
Cdd:PTZ00121 1494 EAKKKADEAKKAAEAKKKADEAKKAEEAKKAdEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAE 1573
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 660 QRCTERVAQAQAQHELEIKKLKELMSATE---KARREKWISEKTKKIKEVTVRGLEPE---IQKLIARHKQEVRRLKSLH 733
Cdd:PTZ00121 1574 EDKNMALRKAEEAKKAEEARIEEVMKLYEeekKMKAEEAKKAEEAKIKAEELKKAEEEkkkVEQLKKKEAEEKKKAEELK 1653
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 734 EAE--------LLQSDERASQRCLRQAEELREQLEREKEALGQQERERARQRQ--RAELEELRQQLEESSSALTRALRAE 803
Cdd:PTZ00121 1654 KAEeenkikaaEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEElkKKEAEEKKKAEELKKAEEENKIKAE 1733
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 804 FEKGREEQERRHQMEL-------NTLKQQLELERQAWEAGRTRKERMSPQEawlLNREQELREEIRKGRDKEIE---LVI 873
Cdd:PTZ00121 1734 EAKKEAEEDKKKAEEAkkdeeekKKIAHLKKEEEKKAEEIRKEKEAVIEEE---LDEEDEKRRMEVDKKIKDIFdnfANI 1810
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 874 HRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSElKGQLGEAEG----ENLRLQGLVRQKERALE 949
Cdd:PTZ00121 1811 IEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNE-NGEDGNKEAdfnkEKDLKEDDEEEIEEADE 1889
|
410
....*....|....*
gi 767994125 950 DAQAVNEQLSSERSN 964
Cdd:PTZ00121 1890 IEKIDKDDIEREIPN 1904
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
528-1004 |
7.46e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.89 E-value: 7.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 528 KLQSIMSFLDEMEKSGQDQLDSQQEgwvpEAGPGPLELGSEVSTSVMRLKLEVEEKKQAMLLLQRALAQQRDLTARRVKE 607
Cdd:TIGR00618 383 TLQQQKTTLTQKLQSLCKELDILQR----EQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEK 458
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 608 TEKALSRQLQRQREHYEATIQR-----------HLAFIDQLIEDKKVLSEKC-----EAVVAELKQEDQRCTERVAQAQA 671
Cdd:TIGR00618 459 IHLQESAQSLKEREQQLQTKEQihlqetrkkavVLARLLELQEEPCPLCGSCihpnpARQDIDNPGPLTRRMQRGEQTYA 538
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 672 QHELEIKKLK-ELMSATEKARREKW--------ISEKTKKIKEVT-----VRGLEPEIQKLIARHKQEVRRLKSLHEAEL 737
Cdd:TIGR00618 539 QLETSEEDVYhQLTSERKQRASLKEqmqeiqqsFSILTQCDNRSKedipnLQNITVRLQDLTEKLSEAEDMLACEQHALL 618
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 738 LQSDERASQRCLRQAEELREQLEREKEAlgqqererarqRQRAELEELRQQLEESSSALTRALRAEFEKGREEQERRHQM 817
Cdd:TIGR00618 619 RKLQPEQDLQDVRLHLQQCSQELALKLT-----------ALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQS 687
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 818 ELNTLKQQLELERQAWEAgrTRKERMSPQEAWLLNREQELREEIRK----GRDKEIELVIHRLEADMALAKEESEKAAES 893
Cdd:TIGR00618 688 EKEQLTYWKEMLAQCQTL--LRELETHIEEYDREFNEIENASSSLGsdlaAREDALNQSLKELMHQARTVLKARTEAHFN 765
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 894 RIKRL--RDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLR-----LQGLVRQKERALEDAQAVNEQLSSERSNLA 966
Cdd:TIGR00618 766 NNEEVtaALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQeipsdEDILNLQCETLVQEEEQFLSRLEEKSATLG 845
|
490 500 510
....*....|....*....|....*....|....*...
gi 767994125 967 QVIRQEFEDrlaaseEETRQAKAELATLQARQQLELEE 1004
Cdd:TIGR00618 846 EITHQLLKY------EECSKQLAQLTQEQAKIIQLSDK 877
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
782-1045 |
9.70e-05 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 46.04 E-value: 9.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 782 LEELRQQLEESSSALTRALRAEFEKGREEQERRHQMEL----NTLKQQLELERQAWEAGRTRKERmspQEAWLLNREQEL 857
Cdd:pfam07888 9 LEEESHGEEGGTDMLLVVPRAELLQNRLEECLQERAELlqaqEAANRQREKEKERYKRDREQWER---QRRELESRVAEL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 858 REEIRKGRDKEIELVIHRLEADMALAKEESEKAAESRIkrlRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRL 937
Cdd:pfam07888 86 KEELRQSREKHEELEEKYKELSASSEELSEEKDALLAQ---RAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKA 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 938 QGLVRQKERALEDAQAVNEQLSSERSNLAQVIrQEFEDRLAASEEETRQAKAELATLQA------RQQLELEEVHRRVKT 1011
Cdd:pfam07888 163 GAQRKEEEAERKQLQAKLQQTEEELRSLSKEF-QELRNSLAQRDTQVLQLQDTITTLTQklttahRKEAENEALLEELRS 241
|
250 260 270
....*....|....*....|....*....|....*..
gi 767994125 1012 A---LARKEEAVSSLRTQHEAAVKRADHLEELLEQHR 1045
Cdd:pfam07888 242 LqerLNASERKVEGLGEELSSMAAQRDRTQAELHQAR 278
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
876-1046 |
1.07e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.16 E-value: 1.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 876 LEADMALAKEESEkAAESRIKRLRDKYEaeLSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAV- 954
Cdd:COG3206 180 LEEQLPELRKELE-EAEAALEEFRQKNG--LVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDAl 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 955 -----NEQLSSERSNLAQVIRQ--EFEDRLAASEEETRQAKAELATLQARQQLELEEVHRRVKTALARKEEAVSSLRTQH 1027
Cdd:COG3206 257 pellqSPVIQQLRAQLAELEAElaELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQL 336
|
170
....*....|....*....
gi 767994125 1028 EAAVKRADHLEELLEQHRR 1046
Cdd:COG3206 337 AQLEARLAELPELEAELRR 355
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
798-1027 |
1.21e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.45 E-value: 1.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 798 RALRAEFEKGREEQERRHQmELNTLKQQLELERQAWEAGRTRKERMSpQEAWLLNREQELREEIRkgrdkEIELVIHRLE 877
Cdd:COG4913 609 RAKLAALEAELAELEEELA-EAEERLEALEAELDALQERREALQRLA-EYSWDEIDVASAEREIA-----ELEAELERLD 681
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 878 ADMAlakeesekaaesrikrlrdkyeaELSELEQSERKLQERCSELKGQLGEAEGENLRLQglvRQKERALEDAQAVNEQ 957
Cdd:COG4913 682 ASSD-----------------------DLAALEEQLEELEAELEELEEELDELKGEIGRLE---KELEQAEEELDELQDR 735
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 958 LSSERSNLAQVIRQEFEDRLAAseeetrqakAELATLQARQQLELEEVHRRVKTALARKEEAVSSLRTQH 1027
Cdd:COG4913 736 LEAAEDLARLELRALLEERFAA---------ALGDAVERELRENLEERIDALRARLNRAEEELERAMRAF 796
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
581-1046 |
1.47e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.12 E-value: 1.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 581 EEKKQAMLLLQRALAQQRDLTArrVKETEKALSRQLQRQREHY---------EATIQRHLAFIDQLIEDKKVLSEKCEAV 651
Cdd:TIGR00618 369 EISCQQHTLTQHIHTLQQQKTT--LTQKLQSLCKELDILQREQatidtrtsaFRDLQGQLAHAKKQQELQQRYAELCAAA 446
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 652 VAELKQEDQRCTERVAQAQAQHELEIKKLKELMSATEKARREKWISEKTKKI----------------KEVTVRGLEPEI 715
Cdd:TIGR00618 447 ITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLElqeepcplcgscihpnPARQDIDNPGPL 526
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 716 QKLIARHKQEVRRLKSLHEAELLQSDERASQRCLRQAEELREQLEREKEALGQQERERARQRQRAELEELRQQLEESSSA 795
Cdd:TIGR00618 527 TRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEA 606
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 796 LTRALRAEFEKGREEQERRHQMELNTLKQQLELERQAWEAGRTRKERMSPQE----AWLLNREQELREEIRKGRdkeiel 871
Cdd:TIGR00618 607 EDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQErvreHALSIRVLPKELLASRQL------ 680
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 872 vihrleadmALAKEESEKAAESRIKRLRDKYEAELSELEQSE----RKLQERCSELKGQLGEAEGENLRLQGLVRQ---- 943
Cdd:TIGR00618 681 ---------ALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIeeydREFNEIENASSSLGSDLAAREDALNQSLKElmhq 751
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 944 -----KERALEDAQA-----VNEQLSSERSNLAQVI------RQEFEDRLAASEEETRQAKAELATLQARQQLELEEVHR 1007
Cdd:TIGR00618 752 artvlKARTEAHFNNneevtAALQTGAELSHLAAEIqffnrlREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEE 831
|
490 500 510
....*....|....*....|....*....|....*....
gi 767994125 1008 RVKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQHRR 1046
Cdd:TIGR00618 832 QFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAK 870
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
630-1039 |
1.68e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.53 E-value: 1.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 630 HLAFIDQLIEDKKVLSEKCEAVVAELKQEDQRCTERVAQAQAQHELEIKKLKELMSATEK-----ARREKWISEKTKKIK 704
Cdd:COG4717 44 RAMLLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEEleeleAELEELREELEKLEK 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 705 EVTVRGLEPEIQKLIARHKQEVRRLKSLHEAELLQSDERASQRCLRQAEELREQLEREKEALGQQERERARQRQRAELEE 784
Cdd:COG4717 124 LLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEE 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 785 LRQQLEESSSALTRAlRAEFEKGREEQER-RHQMELNTLKQQLELERQAWEA-----------GRTRKERMSPQEAWLLN 852
Cdd:COG4717 204 LQQRLAELEEELEEA-QEELEELEEELEQlENELEAAALEERLKEARLLLLIaaallallglgGSLLSLILTIAGVLFLV 282
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 853 REQELREEIRKGRDKEIelviHRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEG 932
Cdd:COG4717 283 LGLLALLFLLLAREKAS----LGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEE 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 933 ENLRLQGLVRQKERA--LEDAQAVNEQLSSERSNLAQVIRQEFEDRLAASEEETRQAKAELATLQARQQLELEEVHRRVK 1010
Cdd:COG4717 359 LEEELQLEELEQEIAalLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELE 438
|
410 420
....*....|....*....|....*....
gi 767994125 1011 TALARKEEAVSSLRTQHEAAVKRADHLEE 1039
Cdd:COG4717 439 EELEELEEELEELREELAELEAELEQLEE 467
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
867-969 |
1.91e-04 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 45.46 E-value: 1.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 867 KEIELVIHRLEADMALAKEESEKAAESRIKRLRDKY---EAELSELE---QSERKLQERCSELKGQLGEAEGENLRLQGL 940
Cdd:COG0542 414 DELERRLEQLEIEKEALKKEQDEASFERLAELRDELaelEEELEALKarwEAEKELIEEIQELKEELEQRYGKIPELEKE 493
|
90 100 110
....*....|....*....|....*....|
gi 767994125 941 VRQKERALEDAQA-VNEQLSSErsNLAQVI 969
Cdd:COG0542 494 LAELEEELAELAPlLREEVTEE--DIAEVV 521
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
632-1039 |
2.39e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 45.42 E-value: 2.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 632 AFIDQLIEDKKVLSEKCEAVVAELKQEDQRCTERVAQAQAQHELEIKKLKELMSATEKARREKWISEKTKKIKEVTVRGL 711
Cdd:TIGR00606 663 AVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLK 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 712 EPEIQKLIARHKQ---EVRRLKS-LHEAELL----QSDERASQRCLRQAEELREQLEREKEA---LGQQERERARQRQRA 780
Cdd:TIGR00606 743 EKEIPELRNKLQKvnrDIQRLKNdIEEQETLlgtiMPEEESAKVCLTDVTIMERFQMELKDVerkIAQQAAKLQGSDLDR 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 781 ELEELRQQLEESSSALTRALRAEFEKGREEQERRHQME-LNTLKQQLELERQAWEAGRTRKERMSPQEAWLLNREQELRE 859
Cdd:TIGR00606 823 TVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQhLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIR 902
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 860 EIRKGRDKEIELV-----IHRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSE-LKGQLGEAEGE 933
Cdd:TIGR00606 903 EIKDAKEQDSPLEtflekDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDyLKQKETELNTV 982
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 934 NLRLQGLVRQKERALED----AQAVNEQLSSERSNLAQVIRQEFEDRLAASEEETRQAKAELATLQARQQleleevhrrv 1009
Cdd:TIGR00606 983 NAQLEECEKHQEKINEDmrlmRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQM---------- 1052
|
410 420 430
....*....|....*....|....*....|
gi 767994125 1010 KTALARKEEAVSSLRTQHEAAVKRADHLEE 1039
Cdd:TIGR00606 1053 KQEHQKLEENIDLIKRNHVLALGRQKGYEK 1082
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
635-965 |
2.72e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 45.17 E-value: 2.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 635 DQLIEDKKVLSEKCEAVVAELKQEDQRCTERVAqAQAQHELEIKKLKELMSATEKARRE--KWISEKTKKIKEVtVRGLE 712
Cdd:pfam01576 738 EQGEEKRRQLVKQVRELEAELEDERKQRAQAVA-AKKKLELDLKELEAQIDAANKGREEavKQLKKLQAQMKDL-QRELE 815
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 713 PEIQ---KLIARHKQEVRRLKSLhEAELLQSDER--ASQRCLRQAEELREQLER--EKEALGQQERERARQRQRAELEEL 785
Cdd:pfam01576 816 EARAsrdEILAQSKESEKKLKNL-EAELLQLQEDlaASERARRQAQQERDELADeiASGASGKSALQDEKRRLEARIAQL 894
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 786 RQQLEESSSALtralraefeKGREEQERRHQMELNTLKQQLELERQAWEAGRTRKERMSPQEAWLLNREQELREEIRKgr 865
Cdd:pfam01576 895 EEELEEEQSNT---------ELLNDRLRKSTLQVEQLTTELAAERSTSQKSESARQQLERQNKELKAKLQEMEGTVKS-- 963
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 866 dkEIELVIHRLEADMA-----LAKEESEKAAESRIKRLRDKYEAELSELEQSER-----------KLQERCSELKGQLGE 929
Cdd:pfam01576 964 --KFKSSIAALEAKIAqleeqLEQESRERQAANKLVRRTEKKLKEVLLQVEDERrhadqykdqaeKGNSRMKQLKRQLEE 1041
|
330 340 350
....*....|....*....|....*....|....*.
gi 767994125 930 AEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNL 965
Cdd:pfam01576 1042 AEEEASRANAARRKLQRELDDATESNESMNREVSTL 1077
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
573-1043 |
3.13e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 45.04 E-value: 3.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 573 VMRLKLEVEEKKQAMLLLQRALAQQRDLTARRVKETEKALSRQLQR-QREHYEATIQRHLAFIDQLIEDKKVLSEKCEAV 651
Cdd:TIGR00606 441 TIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERElSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKL 520
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 652 VAELKQEDQRCTER-----VAQAQAQHELEIKKLK-----ELMSAT----EKARREKWISEKTKKIK--EVTVRGLEPEI 715
Cdd:TIGR00606 521 DQEMEQLNHHTTTRtqmemLTKDKMDKDEQIRKIKsrhsdELTSLLgyfpNKKQLEDWLHSKSKEINqtRDRLAKLNKEL 600
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 716 QKLIARHKQEVRRLKSLhEAELLQSDERASQRCLRQAeELREQLEREKEALGQQERERARQRQRAELEELRQQLEESSSA 795
Cdd:TIGR00606 601 ASLEQNKNHINNELESK-EEQLSSYEDKLFDVCGSQD-EESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQS 678
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 796 LTRALRAEFEKGREEQERRHQMELNTLKQQLELERQAWEAGRTRKER-----MSPQEAWLLNREQELREEIRKgRDKEIE 870
Cdd:TIGR00606 679 CCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRdemlgLAPGRQSIIDLKEKEIPELRN-KLQKVN 757
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 871 LVIHRLEADMA---------LAKEESEKAAESRIKRLRDKYEaelsELEQSERKLQERCSELKGQLGEAEGENLR----- 936
Cdd:TIGR00606 758 RDIQRLKNDIEeqetllgtiMPEEESAKVCLTDVTIMERFQM----ELKDVERKIAQQAAKLQGSDLDRTVQQVNqekqe 833
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 937 --------------LQGLVRQKERALEDAQAVNEQLSSERSNLAQVI--RQEFEDRLAASEEETRQAKAELAtlQARQQL 1000
Cdd:TIGR00606 834 kqheldtvvskielNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLqrRQQFEEQLVELSTEVQSLIREIK--DAKEQD 911
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 767994125 1001 ELEEVHRrvKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQ 1043
Cdd:TIGR00606 912 SPLETFL--EKDQQEKEELISSKETSNKKAQDKVNDIKEKVKN 952
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
578-923 |
3.49e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.67 E-value: 3.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 578 LEVEEKKQAMLLLQRALAQQRDLTARRVKETEKALS------RQLQRQREhyeaTIQRHLAFIDQLIEDKKVLSEKCEAV 651
Cdd:TIGR02169 677 QRLRERLEGLKRELSSLQSELRRIENRLDELSQELSdasrkiGEIEKEIE----QLEQEEEKLKERLEELEEDLSSLEQE 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 652 VAELKQEDQRCTERVaqaqAQHELEIKKLKELMSATEKARREKWISEKTKKIKEvtvrgLEPEIQKLIARHKQEVRRLKS 731
Cdd:TIGR02169 753 IENVKSELKELEARI----EELEEDLHKLEEALNDLEARLSHSRIPEIQAELSK-----LEEEVSRIEARLREIEQKLNR 823
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 732 LHEAELLQSDERASQRCLRQAEELREQLEREKEALGqqererarqrqRAELEELRQQLEESSSALtRALRAEFEKGREEQ 811
Cdd:TIGR02169 824 LTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENL-----------NGKKEELEEELEELEAAL-RDLESRLGDLKKER 891
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 812 ERR--HQMELNTLKQQLELERQaweagrTRKERMSPQEAWLLNREQELRE-EIRKGRDKE----------IELVIHRLEA 878
Cdd:TIGR02169 892 DELeaQLRELERKIEELEAQIE------KKRKRLSELKAKLEALEEELSEiEDPKGEDEEipeeelsledVQAELQRVEE 965
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 767994125 879 DMALAKEESEKAAE--SRIKRLRDKYEAELSELEQSERKLQERCSEL 923
Cdd:TIGR02169 966 EIRALEPVNMLAIQeyEEVLKRLDELKEKRAKLEEERKAILERIEEY 1012
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
567-1045 |
5.35e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 44.26 E-value: 5.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 567 SEVSTSVMRLKLEVEEKKQAMLLLQ-RALAQQRDLTARRVKETEKAlSRQLQRQREHYEATIQRHlAFIDQLIEDKKVLS 645
Cdd:PRK02224 183 SDQRGSLDQLKAQIEEKEEKDLHERlNGLESELAELDEEIERYEEQ-REQARETRDEADEVLEEH-EERREELETLEAEI 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 646 EKCEAVVAELKQEDQRCTERVAQAQAQHEleikklkELMSATEKARREKWISEKTKKIKEVTVRGLEPEIQKLiARHKQE 725
Cdd:PRK02224 261 EDLRETIAETEREREELAEEVRDLRERLE-------ELEEERDDLLAEAGLDDADAEAVEARREELEDRDEEL-RDRLEE 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 726 VRRLKSLHEAELLQSDERASQRCLRQAEELREQLEREKEAlgqQERERARQRQRAELEELRQQLEESSSALTRA------ 799
Cdd:PRK02224 333 CRVAAQAHNEEAESLREDADDLEERAEELREEAAELESEL---EEAREAVEDRREEIEELEEEIEELRERFGDApvdlgn 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 800 LRAEFEKGREEQERRHQME------LNTLKQQLELERQAWEAGRTRKERMSPQEAWLLNREQELREEIRKGRDKEIELVI 873
Cdd:PRK02224 410 AEDFLEELREERDELREREaeleatLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEE 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 874 HRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKL---QERCSELKGQLGEAEGENLRLQGLVRQKERALED 950
Cdd:PRK02224 490 EVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIeekRERAEELRERAAELEAEAEEKREAAAEAEEEAEE 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 951 AQAVNEQLSSERSNLAQVIRQ--EFEDRLAASEE---------ETRQAKAELATlQARQQLElEEVHRRVKTALARKEEA 1019
Cdd:PRK02224 570 AREEVAELNSKLAELKERIESleRIRTLLAAIADaedeierlrEKREALAELND-ERRERLA-EKRERKRELEAEFDEAR 647
|
490 500
....*....|....*....|....*.
gi 767994125 1020 VSSLRTQHEAAVKRADHLEELLEQHR 1045
Cdd:PRK02224 648 IEEAREDKERAEEYLEQVEEKLDELR 673
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
677-1002 |
5.42e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 44.30 E-value: 5.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 677 IKKLKELMSATEK----ARREKWISEKTKKIKevtvrglepeiQKLIARHKQEVRRlkSLHEAELLQSDERASQRCLRQa 752
Cdd:COG5022 796 FIKLQPLLSLLGSrkeyRSYLACIIKLQKTIK-----------REKKLRETEEVEF--SLKAEVLIQKFGRSLKAKKRF- 861
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 753 eelreqLEREKEALgqqereraRQRQRAELEELRQQLEEsssaltralraefekgrEEQERRhqmELNTLKQQ-LELERQ 831
Cdd:COG5022 862 ------SLLKKETI--------YLQSAQRVELAERQLQE-----------------LKIDVK---SISSLKLVnLELESE 907
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 832 AWEAGRTRKERMSPQEAWLLNREQELrEEIRKGRDKEIELVIHRLEADmalaKEESEKAAESRIKRLRDKYEAELSELEQ 911
Cdd:COG5022 908 IIELKKSLSSDLIENLEFKTELIARL-KKLLNNIDLEEGPSIEYVKLP----ELNKLHEVESKLKETSEEYEDLLKKSTI 982
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 912 SERKLQERCSELKG---QLGEAEGENLRLQ---GLVRQKERALEDAQAVNEQLSSERSNLAQviRQEFEDRLAASEEETR 985
Cdd:COG5022 983 LVREGNKANSELKNfkkELAELSKQYGALQestKQLKELPVEVAELQSASKIISSESTELSI--LKPLQKLKGLLLLENN 1060
|
330
....*....|....*..
gi 767994125 986 QAKAELATLQARQQLEL 1002
Cdd:COG5022 1061 QLQARYKALKLRRENSL 1077
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
794-1018 |
7.16e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.60 E-value: 7.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 794 SALTRALRAEFEKGREEQERRHQMELNTLKQQLELERQAWEAGRTRKERMSPqeawLLNREQELREEIRkgrdkeielvi 873
Cdd:COG4717 41 AFIRAMLLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAE----LQEELEELEEELE----------- 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 874 hrleadmalAKEESEKAAESRIKRLRDkyEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQA 953
Cdd:COG4717 106 ---------ELEAELEELREELEKLEK--LLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAE 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767994125 954 VNEQLSSERSNLAQVIRQEFED---RLAASEEETRQAKAELATLQARQQLELEEVHRRVKTALARKEE 1018
Cdd:COG4717 175 LQEELEELLEQLSLATEEELQDlaeELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALE 242
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
782-1046 |
8.15e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.79 E-value: 8.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 782 LEELRQQLEESSSALTRAlraefekgrEEQERRHQMELNTLKQQLELERqaweagrtrkeRMSPQ-----EAWLLNREQE 856
Cdd:PRK04863 839 LRQLNRRRVELERALADH---------ESQEQQQRSQLEQAKEGLSALN-----------RLLPRlnllaDETLADRVEE 898
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 857 LREEIRKGRDKEIELVIH-----RLEADMALAKEESEK---------AAESRIKRLRDKYEAeLSEL---------EQSE 913
Cdd:PRK04863 899 IREQLDEAEEAKRFVQQHgnalaQLEPIVSVLQSDPEQfeqlkqdyqQAQQTQRDAKQQAFA-LTEVvqrrahfsyEDAA 977
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 914 RKL---QERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQvIRQEFEDRLaasEEETRQAKAE 990
Cdd:PRK04863 978 EMLaknSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQ-MLQELKQEL---QDLGVPADSG 1053
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 767994125 991 LATLQARQQLELEEVHRRVKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQHRR 1046
Cdd:PRK04863 1054 AEERARARRDELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMRE 1109
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
857-1016 |
8.44e-04 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 42.65 E-value: 8.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 857 LREEIrKGRDKEIELVIHRLeADMA--LAKEESEKAA-ESRIKRLRdkyeAELSELEqSERklqercSELKGQLGEAEGE 933
Cdd:PRK09039 44 LSREI-SGKDSALDRLNSQI-AELAdlLSLERQGNQDlQDSVANLR----ASLSAAE-AER------SRLQALLAELAGA 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 934 NLRLQGLVRQKERALEDAQAV-----------NEQLSSERSNLAQVirqefEDRLAASEEETRQAKAELATLQarqqlel 1002
Cdd:PRK09039 111 GAAAEGRAGELAQELDSEKQVsaralaqvellNQQIAALRRQLAAL-----EAALDASEKRDRESQAKIADLG------- 178
|
170
....*....|....
gi 767994125 1003 eevhRRVKTALARK 1016
Cdd:PRK09039 179 ----RRLNVALAQR 188
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
897-1046 |
8.56e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.52 E-value: 8.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 897 RLRDKYEAELSELEQSERkLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQEFEdR 976
Cdd:TIGR02169 661 APRGGILFSRSEPAELQR-LRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKE-R 738
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767994125 977 LAASEEETRQAKAELATLQARQQlELEEVHRRVKTALARKEEAVSSL--RTQHEAAVKRADHLEELLEQHRR 1046
Cdd:TIGR02169 739 LEELEEDLSSLEQEIENVKSELK-ELEARIEELEEDLHKLEEALNDLeaRLSHSRIPEIQAELSKLEEEVSR 809
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
894-1043 |
9.99e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.83 E-value: 9.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 894 RIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQavnEQLSSERSNlaqvirqef 973
Cdd:COG1579 21 RLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYE---EQLGNVRNN--------- 88
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 974 edrlaaseEETRQAKAELATLQARQQlELEEVHRRVKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQ 1043
Cdd:COG1579 89 --------KEYEALQKEIESLKRRIS-DLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDE 149
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
725-1040 |
1.01e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.42 E-value: 1.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 725 EVRRLKSLHEAELLQSDERASQRCLRQAEELREQLEREKEALGQQERERARQRQRAELEELRQQLEESSSALTRALRAEF 804
Cdd:pfam02463 152 PERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDY 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 805 EKGREEQERRHQMELNTLKQQLELERQAWEAgrtrkermspqEAWLLNREQELREEIRKGRDKEIElvihrlEADMALAK 884
Cdd:pfam02463 232 LKLNEERIDLLQELLRDEQEEIESSKQEIEK-----------EEEKLAQVLKENKEEEKEKKLQEE------ELKLLAKE 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 885 EESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSN 964
Cdd:pfam02463 295 EEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEE 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 965 LAQVIRQEFEDRLAASEEETRQA------KAELATLQARQQLELEEVHRRVKTALARKEEAVSSLRTQHEAAVKRADHLE 1038
Cdd:pfam02463 375 LLAKKKLESERLSSAAKLKEEELelkseeEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELE 454
|
..
gi 767994125 1039 EL 1040
Cdd:pfam02463 455 KQ 456
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
572-918 |
1.05e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.12 E-value: 1.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 572 SVMRLKLEVEEKKQAMLLLQRALAQQRDLTARRVKETEKALSRQLQRQREHYEATIQRHLAFIDQLIEDKKVLSE---KC 648
Cdd:TIGR02168 729 SALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREaldEL 808
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 649 EAVVAELKQEDQRCTERVAQAQAQHELEIKKLKELmsatekarrekwiSEKTKKIKEvtvrglepEIQKLIARHKQEVRR 728
Cdd:TIGR02168 809 RAELTLLNEEAANLRERLESLERRIAATERRLEDL-------------EEQIEELSE--------DIESLAAEIEELEEL 867
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 729 LKSLHEAELLQSDERASQRCLRQAeelreqlerekealgqqererarqrQRAELEELRQQLEESSSALtRALRAEFEKGR 808
Cdd:TIGR02168 868 IEELESELEALLNERASLEEALAL-------------------------LRSELEELSEELRELESKR-SELRRELEELR 921
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 809 EEQErRHQMELNTLKQQL-ELERQAWEAGRTRKERMSPQEAWLLNREQELREEIrkgrdKEIELVIHRLEADMALAKEES 887
Cdd:TIGR02168 922 EKLA-QLELRLEGLEVRIdNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRL-----KRLENKIKELGPVNLAAIEEY 995
|
330 340 350
....*....|....*....|....*....|.
gi 767994125 888 EKAAESrikrlRDKYEAELSELEQSERKLQE 918
Cdd:TIGR02168 996 EELKER-----YDFLTAQKEDLTEAKETLEE 1021
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
783-1032 |
1.17e-03 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 42.71 E-value: 1.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 783 EELRQQLEESSSALTRALRA---------EFEKGREEQERRHQMELNTLKQQLELERQAWEAGRTRKERMSPQEAWLLNR 853
Cdd:pfam05667 254 EQLRSAALAGTEATSGASRSaqdlaellsSFSGSSTTDTGLTKGSRFTHTEKLQFTNEAPAATSSPPTKVETEEELQQQR 333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 854 EQELreeirkgrdKEIELVIHRLEADMALAKEESEKaAESRIKRLRDK---YEAELSELEQsERKLQERCSELkgqLGEA 930
Cdd:pfam05667 334 EEEL---------EELQEQLEDLESSIQELEKEIKK-LESSIKQVEEEleeLKEQNEELEK-QYKVKKKTLDL---LPDA 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 931 EGENLRLQGLVRQkeraledaqavneqlSSERsnLAQvIRQEFEDRLAASEEETRQAKAELAT--LQARQQL-ELEEVHR 1007
Cdd:pfam05667 400 EENIAKLQALVDA---------------SAQR--LVE-LAGQWEKHRVPLIEEYRALKEAKSNkeDESQRKLeEIKELRE 461
|
250 260
....*....|....*....|....*...
gi 767994125 1008 RVKTA---LARKEEAVSSLRTQHEAAVK 1032
Cdd:pfam05667 462 KIKEVaeeAKQKEELYKQLVAEYERLPK 489
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
782-1048 |
1.43e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 42.72 E-value: 1.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 782 LEELRQQLEESSSALTR---------ALRAEFEKGREEQERRHQmELNTLKQQLELERQAWEAGRTRKErmspqeawlln 852
Cdd:PRK02224 208 LNGLESELAELDEEIERyeeqreqarETRDEADEVLEEHEERRE-ELETLEAEIEDLRETIAETERERE----------- 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 853 reqELREEIRKGRDKEIELvihRLEADMALAKEESEKAAESRIkrlrdkyEAELSELEQSERKLQERCSELKGQLGEAEG 932
Cdd:PRK02224 276 ---ELAEEVRDLRERLEEL---EEERDDLLAEAGLDDADAEAV-------EARREELEDRDEELRDRLEECRVAAQAHNE 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 933 ENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRqEFEDRLAASEEETRQAKAELATLQARQQlELEEVHRRVKTA 1012
Cdd:PRK02224 343 EAESLREDADDLEERAEELREEAAELESELEEAREAVE-DRREEIEELEEEIEELRERFGDAPVDLG-NAEDFLEELREE 420
|
250 260 270
....*....|....*....|....*....|....*.
gi 767994125 1013 LARKEEAVSSLRTQHEAAVKRADHLEELLEQHRRPT 1048
Cdd:PRK02224 421 RDELREREAELEATLRTARERVEEAEALLEAGKCPE 456
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
803-1052 |
1.46e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.82 E-value: 1.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 803 EFEKGREEQERRhqmelnTLKQQLELERQAWEAGRTRKERMSPQEAwllNREQELR--EEIRKGRDKEIELVIHRLE--- 877
Cdd:PTZ00121 1094 EEAFGKAEEAKK------TETGKAEEARKAEEAKKKAEDARKAEEA---RKAEDARkaEEARKAEDAKRVEIARKAEdar 1164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 878 -ADMALAKEESEKAAESRiKRLRDKYEAELSELEQSERKLQERCSELKGQLGEA-EGENLRLQGLVRQKERALEDAQavn 955
Cdd:PTZ00121 1165 kAEEARKAEDAKKAEAAR-KAEEVRKAEELRKAEDARKAEAARKAEEERKAEEArKAEDAKKAEAVKKAEEAKKDAE--- 1240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 956 EQLSSERSNLAQVIRQEFEDRLAASEEETRQAKAElatlQARQQLELEEVHRRVKTALARKEEAVsslrtqheaavKRAD 1035
Cdd:PTZ00121 1241 EAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAE----EARKADELKKAEEKKKADEAKKAEEK-----------KKAD 1305
|
250
....*....|....*..
gi 767994125 1036 HLEELLEQHRRPTPSTK 1052
Cdd:PTZ00121 1306 EAKKKAEEAKKADEAKK 1322
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
887-1045 |
1.60e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.75 E-value: 1.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 887 SEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQglvRQKERALEDAQAVNEQLSSERSNLA 966
Cdd:TIGR02169 671 SEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIE---KEIEQLEQEEEKLKERLEELEEDLS 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 967 QVIR---------QEFEDRLAASEEETRQAKAELATLQAR----QQLELEEVHRRVKTALARKEEAVSSLrtqhEAAVKR 1033
Cdd:TIGR02169 748 SLEQeienvkselKELEARIEELEEDLHKLEEALNDLEARlshsRIPEIQAELSKLEEEVSRIEARLREI----EQKLNR 823
|
170
....*....|..
gi 767994125 1034 ADHLEELLEQHR 1045
Cdd:TIGR02169 824 LTLEKEYLEKEI 835
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
800-909 |
2.62e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.69 E-value: 2.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 800 LRAEFEKGREEQERRHQMELNTLKQQLELERQAWEAGRTRKERMSPQEAWLLNREQEL---REEIRKGRDKEIElvihRL 876
Cdd:PRK12704 69 LRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELekkEEELEELIEEQLQ----EL 144
|
90 100 110
....*....|....*....|....*....|...
gi 767994125 877 EADMALAKEEsekAAESRIKRLRDKYEAELSEL 909
Cdd:PRK12704 145 ERISGLTAEE---AKEILLEKVEEEARHEAAVL 174
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
578-1011 |
2.86e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 41.64 E-value: 2.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 578 LEVEEKKQAMLLLQRALAQQRDLTARRVKE----TEKALSRQ------------LQRQREHYEATIQRHLAFID------ 635
Cdd:pfam15921 250 LKSESQNKIELLLQQHQDRIEQLISEHEVEitglTEKASSARsqansiqsqleiIQEQARNQNSMYMRQLSDLEstvsql 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 636 --QLIEDKKVLSEKCEAVVAEL----KQEDQRCTERVAQAQAQHELEiKKLKELMSATEKarREKWISEKTKKIKEVTVR 709
Cdd:pfam15921 330 rsELREAKRMYEDKIEELEKQLvlanSELTEARTERDQFSQESGNLD-DQLQKLLADLHK--REKELSLEKEQNKRLWDR 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 710 GLEPEI-----QKLIARHKQEVRRLKSLHEAellQSDERASQRCLRQAEELREQLEREKEALGQQERERARQRQRAELEE 784
Cdd:pfam15921 407 DTGNSItidhlRRELDDRNMEVQRLEALLKA---MKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEE 483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 785 L--RQQLEESSSALTRALRAEFEKgREEQERRHQMELNTLKQQLELERQAWEAGRTRKERMSPQEAwllnrEQELREEIR 862
Cdd:pfam15921 484 LtaKKMTLESSERTVSDLTASLQE-KERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQT-----ECEALKLQM 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 863 KGRDKEIELVIHRLEADMALAKEESEKAAESRIKRLRDKYE-----AELSELEQSERKLQERCSELKGQLGEAEGENLRL 937
Cdd:pfam15921 558 AEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEindrrLELQEFKILKDKKDAKIRELEARVSDLELEKVKL 637
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 938 QGLVRQKERALEDAQAVNEQLSSE----RSNLA------QVIRQEFEDRLAASEEETRQAKAELATLQArqqlELEEVHR 1007
Cdd:pfam15921 638 VNAGSERLRAVKDIKQERDQLLNEvktsRNELNslsedyEVLKRNFRNKSEEMETTTNKLKMQLKSAQS----ELEQTRN 713
|
....
gi 767994125 1008 RVKT 1011
Cdd:pfam15921 714 TLKS 717
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
782-1028 |
2.97e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 41.70 E-value: 2.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 782 LEELRQQLEESSSALTRALRAEFEKGREEQERRhqMELNTLKQQLELERQAWEAgrtrkeRMSPQEawllNREQELREEI 861
Cdd:pfam01576 31 LEKKHQQLCEEKNALQEQLQAETELCAEAEEMR--ARLAARKQELEEILHELES------RLEEEE----ERSQQLQNEK 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 862 RKGRDKEIELVIHRLEADMALAKEESEK-AAESRIKRLRDK---YEAELSELEQSERKLQERCSELKGQLGEAEGENLRL 937
Cdd:pfam01576 99 KKMQQHIQDLEEQLDEEEAARQKLQLEKvTTEAKIKKLEEDillLEDQNSKLSKERKLLEERISEFTSNLAEEEEKAKSL 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 938 QGLVRQKERALEDAQavneqlssERSNLAQVIRQEFEDRLAASEEETRQAKAELATLQARqqleLEEvhrrVKTALARKE 1017
Cdd:pfam01576 179 SKLKNKHEAMISDLE--------ERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQ----IAE----LRAQLAKKE 242
|
250
....*....|.
gi 767994125 1018 EAVSSLRTQHE 1028
Cdd:pfam01576 243 EELQAALARLE 253
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
867-1031 |
4.24e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.92 E-value: 4.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 867 KEIELVIHRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERcselkgqlgeaegenlrlqglVRQKER 946
Cdd:PRK12704 38 EEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKR---------------------LLQKEE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 947 ALEDAQavnEQLSSERSNLaqvirQEFEDRLAASEEETRQAKAELATLQARQQLELEEVhrrvkTALArKEEAVSSL--- 1023
Cdd:PRK12704 97 NLDRKL---ELLEKREEEL-----EKKEKELEQKQQELEKKEEELEELIEEQLQELERI-----SGLT-AEEAKEILlek 162
|
170
....*....|.
gi 767994125 1024 ---RTQHEAAV 1031
Cdd:PRK12704 163 veeEARHEAAV 173
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
664-909 |
4.43e-03 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 40.83 E-value: 4.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 664 ERVAQA-QAQHELEiKKLKEL-MSATEKARREKWISEKTKKIKEVtvrGLEP-EIQKLIARHK--QEVRRLKS-LHEA-E 736
Cdd:COG0497 158 EEYREAyRAWRALK-KELEELrADEAERARELDLLRFQLEELEAA---ALQPgEEEELEEERRrlSNAEKLREaLQEAlE 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 737 LLQSDERASQRCLRQAEELREQLEREKEALGQQERErarqrqraeLEELRQQLEESSSALTRAL-RAEFEKGR-EEQERR 814
Cdd:COG0497 234 ALSGGEGGALDLLGQALRALERLAEYDPSLAELAER---------LESALIELEEAASELRRYLdSLEFDPERlEEVEER 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 815 HQmELNTLKqqlelerqaweagrtRKERMSPQEawLLNREQELREEIRK--GRDKEIElvihRLEADMALAKEESEKAAE 892
Cdd:COG0497 305 LA-LLRRLA---------------RKYGVTVEE--LLAYAEELRAELAEleNSDERLE----ELEAELAEAEAELLEAAE 362
|
250 260
....*....|....*....|....
gi 767994125 893 ----SRIK---RLRDKYEAELSEL 909
Cdd:COG0497 363 klsaARKKaakKLEKAVTAELADL 386
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
714-975 |
4.66e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.05 E-value: 4.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 714 EIQKLIARHKQEVRRLKSLHEAELLQSDERASQRCLRQAEELREQLEREKEALgqqererarQRQRAELEELRQQLEESS 793
Cdd:COG4913 628 EAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELERL---------DASSDDLAALEEQLEELE 698
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 794 SALtRALRAEFEKgREEQERRHQMELNTLKQQLELERQAWEAgrtRKERMSPQEAWLLnrEQELREEIRKGRDKEIELVI 873
Cdd:COG4913 699 AEL-EELEEELDE-LKGEIGRLEKELEQAEEELDELQDRLEA---AEDLARLELRALL--EERFAAALGDAVERELRENL 771
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 874 HRLEADMALAKEESEKAAESRIKRLRDKYEAELSELE---QSERKLQERCSELKGQlgeaegenlrlqGLVRQKERALEd 950
Cdd:COG4913 772 EERIDALRARLNRAEEELERAMRAFNREWPAETADLDadlESLPEYLALLDRLEED------------GLPEYEERFKE- 838
|
250 260
....*....|....*....|....*
gi 767994125 951 aqAVNEQLSSERSNLAQVIRQEFED 975
Cdd:COG4913 839 --LLNENSIEFVADLLSKLRRAIRE 861
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
611-705 |
4.72e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 40.97 E-value: 4.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 611 ALSRQLQRQREHYEATIQRHLAFIDQLIEDKKVLSEKCEAVVAELKQEDQrctERVAQAQAQHELEIKKLKELMSATEKA 690
Cdd:PRK00409 527 ELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQ---QAIKEAKKEADEIIKELRQLQKGGYAS 603
|
90
....*....|....*
gi 767994125 691 RREKWISEKTKKIKE 705
Cdd:PRK00409 604 VKAHELIEARKRLNK 618
|
|
| COG4192 |
COG4192 |
Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal ... |
866-1051 |
6.33e-03 |
|
Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms];
Pssm-ID: 443346 [Multi-domain] Cd Length: 640 Bit Score: 40.44 E-value: 6.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 866 DKEIELVIHRLEADMALAKEESEKAAESRIKRLRDKYE---AELSELEQSERKLQERCSELKGQLgEAEGENL-RLQGLV 941
Cdd:COG4192 61 EENSNELVAALPEFAAATNTTERSQLRNQLNTQLADIEellAELEQLTQDAGDLRAAVADLRNLL-QQLDSLLtQRIALR 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 942 RQKERALEDAQAVNEQLSSERSNLAQVIRQEFEdRLAASEEETRQAKAELATLQARQQLELEEVhrRVKTAL-----ARK 1016
Cdd:COG4192 140 RRLQELLEQINWLHQDFNSELTPLLQEASWQQT-RLLDSVETTESLRNLQNELQLLLRLLAIEN--QIVSLLrevaaARD 216
|
170 180 190
....*....|....*....|....*....|....*
gi 767994125 1017 EEAVSSLRTQHEAAVKRADHLEELLEQHrrptPST 1051
Cdd:COG4192 217 QADVDNLFDRLQYLKDELDRNLQALKNY----PST 247
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
855-992 |
7.14e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.52 E-value: 7.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 855 QELREEIRKGRDKEIELVIHRLEADMALAKEESE-KAAESRIKRLRDK---------YEA----------ELSELEQSER 914
Cdd:COG1579 34 AELEDELAALEARLEAAKTELEDLEKEIKRLELEiEEVEARIKKYEEQlgnvrnnkeYEAlqkeieslkrRISDLEDEIL 113
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767994125 915 KLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQEFEDRLAASEEETRQAKAELA 992
Cdd:COG1579 114 ELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKIPPELLALYERIRKRKNGLA 191
|
|
| PHA03252 |
PHA03252 |
DNA packaging tegument protein UL25; Provisional |
870-981 |
7.67e-03 |
|
DNA packaging tegument protein UL25; Provisional
Pssm-ID: 223024 Cd Length: 589 Bit Score: 40.08 E-value: 7.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 870 ELVIHRLEADMALA-KEESEKAAESRIKRLRDKyeaelSELEQSERKLQERCSELKGQLGEAegENLRLQGLVRQKERAL 948
Cdd:PHA03252 28 EEDLRRLRDDSALRlRRYREDLLRDRLLRRRLG-----EELDDLQKRLQTECEDLRSRVSEA--EALLLHDASGGEGGGA 100
|
90 100 110
....*....|....*....|....*....|...
gi 767994125 949 EDAQAVNEQLSSERSNLAQVIRQEFEDRLAASE 981
Cdd:PHA03252 101 TNGGEVNVDGGADRTWLAQSPERPADGGPSGER 133
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
581-1040 |
9.76e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 39.95 E-value: 9.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 581 EEKKQAMLLLQRALAQQRDLTARRVKETEKALSRQLQRQREHYeATIQRHLAFIDQLIEDKKVLSEKCEAVVAELKQEDQ 660
Cdd:TIGR00618 253 EEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPL-AAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRA 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 661 RCTERVAQAQAQHELEIKKLKELMSATEKARREKWISEKTKKIKEVTVRGLEPEIQKLIARHK-QEVRRLKSLHEAELLQ 739
Cdd:TIGR00618 332 AHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKlQSLCKELDILQREQAT 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 740 SDER-ASQRCLRQ------AEELREQLEREKEALGQQERERARQRQRAELEELRQQLEESSSALtralrAEFEKGREEQE 812
Cdd:TIGR00618 412 IDTRtSAFRDLQGqlahakKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQL-----QTKEQIHLQET 486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 813 RRHQMELNTLKQQLELERQAweAGRTRKERMSPQEAWLLNREQELREEIRKGR---DKEIELVIHRLEADMALAKEESEK 889
Cdd:TIGR00618 487 RKKAVVLARLLELQEEPCPL--CGSCIHPNPARQDIDNPGPLTRRMQRGEQTYaqlETSEEDVYHQLTSERKQRASLKEQ 564
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 890 A-----AESRIKRLRDKYEAELSELEQSERKLQ---ERCSELKGQLGEAEGENLR-LQGLVRQKERALEDAQaVNEQLSS 960
Cdd:TIGR00618 565 MqeiqqSFSILTQCDNRSKEDIPNLQNITVRLQdltEKLSEAEDMLACEQHALLRkLQPEQDLQDVRLHLQQ-CSQELAL 643
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767994125 961 ERSNLAQVIRQEFEDRLAASEEETRQAKAELATLQARQQLELEEVHRRVKTALARKEEAVSSLRTQHEAAVKRADHLEEL 1040
Cdd:TIGR00618 644 KLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEI 723
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