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Conserved domains on  [gi|767923728|ref|XP_011532201|]
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protein SHQ1 homolog isoform X5 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SHQ1 super family cl04847
SHQ1 protein; S. cerevisiae SHQ1 protein is required for SnoRNAs of the box H/ACA Quantitative ...
 234-312 1.02e-33

SHQ1 protein; S. cerevisiae SHQ1 protein is required for SnoRNAs of the box H/ACA Quantitative accumulation (unpublished).


The actual alignment was detected with superfamily member pfam04925:

Pssm-ID: 461483  Cd Length: 186  Bit Score: 123.39  E-value: 1.02e-33
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767923728  234 QEQENHATLVSFSEEEKYQLRKFVNKSYLLDKRACRQVCYSLIDILLAYCYETRVTEGEKNVESAWNIRKLSPTLCWFE 312
Cdd:pfam04925   1 EEDKESSMPVEFTDEEQEQMKNLPRKEYLLDKENKKELYLGLVDILFAYAYDQRETEGEHNVESAWTIGKLSPQLSWLD 79
 
Name Accession Description Interval E-value
SHQ1 pfam04925
SHQ1 protein; S. cerevisiae SHQ1 protein is required for SnoRNAs of the box H/ACA Quantitative ...
 234-312 1.02e-33

SHQ1 protein; S. cerevisiae SHQ1 protein is required for SnoRNAs of the box H/ACA Quantitative accumulation (unpublished).


Pssm-ID: 461483  Cd Length: 186  Bit Score: 123.39  E-value: 1.02e-33
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767923728  234 QEQENHATLVSFSEEEKYQLRKFVNKSYLLDKRACRQVCYSLIDILLAYCYETRVTEGEKNVESAWNIRKLSPTLCWFE 312
Cdd:pfam04925   1 EEDKESSMPVEFTDEEQEQMKNLPRKEYLLDKENKKELYLGLVDILFAYAYDQRETEGEHNVESAWTIGKLSPQLSWLD 79
 
Name Accession Description Interval E-value
SHQ1 pfam04925
SHQ1 protein; S. cerevisiae SHQ1 protein is required for SnoRNAs of the box H/ACA Quantitative ...
 234-312 1.02e-33

SHQ1 protein; S. cerevisiae SHQ1 protein is required for SnoRNAs of the box H/ACA Quantitative accumulation (unpublished).


Pssm-ID: 461483  Cd Length: 186  Bit Score: 123.39  E-value: 1.02e-33
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767923728  234 QEQENHATLVSFSEEEKYQLRKFVNKSYLLDKRACRQVCYSLIDILLAYCYETRVTEGEKNVESAWNIRKLSPTLCWFE 312
Cdd:pfam04925   1 EEDKESSMPVEFTDEEQEQMKNLPRKEYLLDKENKKELYLGLVDILFAYAYDQRETEGEHNVESAWTIGKLSPQLSWLD 79
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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