|
Name |
Accession |
Description |
Interval |
E-value |
| CortBP2 |
pfam09727 |
Cortactin-binding protein-2; This entry is the first approximately 250 residues of ... |
66-248 |
5.44e-66 |
|
Cortactin-binding protein-2; This entry is the first approximately 250 residues of cortactin-binding protein 2. In addition to being a positional candidate for autism this protein is expressed at highest levels in the brain in humans. The human protein has six associated ankyrin repeat domains pfam00023 towards the C-terminus which act as protein-protein interaction domains.
Pssm-ID: 462860 [Multi-domain] Cd Length: 187 Bit Score: 220.94 E-value: 5.44e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 66 DLSRDDLLFLLSILEGELQARDEVIGILKAEKMDLALLEAQYGFVTPKKVLEALQRDAFQAKSAPWQEDIYE----KPMN 141
Cdd:pfam09727 1 DLSKDDLLKLLSILEGELQARDIVIAVLKAEKVKQLLLEARYGFKYPSDPLLALQRDSELLRDQSQDEDVYEamyeKPLA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 142 ELDKVVEKHKESYRRILGQLLVVEKSHRQTILELEEEKRKHKEYMEKSDEFICLLEQECERLKKLIDQEIKSQEEKEQEK 221
Cdd:pfam09727 81 ELEKLVEKQRETQRRMLEQLAAAEKRHRRVIRELEEEKRKHARDTAQGDDFTYLLEKERERLKQELEQEKAQQKRLEKEL 160
|
170 180
....*....|....*....|....*..
gi 1622909575 222 EKRVTTLKEELTKLKSFALMVVDEQQR 248
Cdd:pfam09727 161 KKLLEKLEEELSKQKQIALLLVKERKR 187
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
224-836 |
2.37e-20 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 97.82 E-value: 2.37e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 224 RVTTLKEELTKLKSFALMVVDEQQRLTAQLTLQRQKIQELTTNAKETHTKLALAEARVQEEEQKATRLEKELQTQTTKFH 303
Cdd:TIGR02168 233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLA 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 304 QDQHTIM---AKLTNEDSQNRQLQQKLAALSRQIDELEETNRSLRKAEEELQDIKEKIskgEYGNAGIMAEVEELRKRVL 380
Cdd:TIGR02168 313 NLERQLEeleAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEEL---ESRLEELEEQLETLRSKVA 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 381 DMEGK----DEELIKMEEQCRDLNKRLEKET---------LQSKDFKLEVEKLSKRIMALEKLEDAFNKSKQECYSLKCN 447
Cdd:TIGR02168 390 QLELQiaslNNEIERLEARLERLEDRRERLQqeieellkkLEEAELKELQAELEELEEELEELQEELERLEEALEELREE 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 448 LEKERMTTKQLSQELESLKGRIKELEAIESRLEKTEFTLKEDLTKLKTLTVMF--------VDE--RKTMSEKL------ 511
Cdd:TIGR02168 470 LEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILgvlselisVDEgyEAAIEAALggrlqa 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 512 ---KKTEDKLQAASSQLQVEQNKVTTVTEKLIEETKrALKSKTDVEEKMYSVTKERDDLKNKLKAEEEKGNDLLSRV--- 585
Cdd:TIGR02168 550 vvvENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTE-IQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVlvv 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 586 ------NMLKNRLQSLEAI-----EKDFPKNKLNQDSGKSTTALHQENNKIKELSQEVERLKLKLKDMKA---------- 644
Cdd:TIGR02168 629 ddldnaLELAKKLRPGYRIvtldgDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKalaelrkele 708
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 645 -IEDDLMKTEDEYETLERR-------YANERDKAQFLSKELEHVKMELTKYKLAEKTETSHEQWLFKRLQEEEAKSGHLS 716
Cdd:TIGR02168 709 eLEEELEQLRKELEELSRQisalrkdLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELE 788
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 717 REVDALKEKI----HEYMATEDLICHLQGDHSVLQKKLNQQENRNRDLGREIENLTKELERYRHFSKSLRPSLNGRRISD 792
Cdd:TIGR02168 789 AQIEQLKEELkalrEALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELI 868
|
650 660 670 680
....*....|....*....|....*....|....*....|....
gi 1622909575 793 TQvfsKEVQTEAVDNEppdyKSLIPLERAVINGQLYEESEDQDE 836
Cdd:TIGR02168 869 EE---LESELEALLNE----RASLEEALALLRSELEELSEELRE 905
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
224-775 |
2.21e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 88.07 E-value: 2.21e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 224 RVTTLKEELTKLKSFALmvVDEQQRLTAQLTLQRQKIQELTTNAKETHTKLALAEARVQEEEQKATRLEKELQTQTTKFH 303
Cdd:COG1196 214 RYRELKEELKELEAELL--LLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 304 QDQHTIMAKLTNEDSQNRQLQQKLAALSRQIDELEETNRSLRKAEEELQDIKEKISKGEYGNAGIMAEVEELRKRVLDME 383
Cdd:COG1196 292 ELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAE 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 384 GKDEELIKMEEQCRDLNKRLEKETLQSKDFKLEVEK--------LSKRIMALEKLEDAFNKSKQECYSLKCNLEKERMTT 455
Cdd:COG1196 372 AELAEAEEELEELAEELLEALRAAAELAAQLEELEEaeeallerLERLEEELEELEEALAELEEEEEEEEEALEEAAEEE 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 456 KQLSQELESLKGRIKELEAIESRLEKTEFTLKEDLTKLKTLTVMFVDERKTMSE-----KLKKTEDKLQAASSQLQVEQn 530
Cdd:COG1196 452 AELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGflegvKAALLLAGLRGLAGAVAVLI- 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 531 KVTTVTEKLIEETKRALkSKTDVEEKMYSVTKERDDLK------------NKLKAEEEKGNDLLSRVNMLKNRLQSLEAI 598
Cdd:COG1196 531 GVEAAYEAALEAALAAA-LQNIVVEDDEVAAAAIEYLKaakagratflplDKIRARAALAAALARGAIGAAVDLVASDLR 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 599 EKDFPKNKLNQDSGKSTTALHQENNKIKELSQEVERLKLKLKDMKAIEDDLMKTEDEYETLERRYANERDKAQFLSKELE 678
Cdd:COG1196 610 EADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLA 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 679 HVKMELTKYKLAEKTETSHEQWLFKRLQEEEAKSGHLSREVDALKEKIHEYMATEDLICHLQG--------DHSVLQKKL 750
Cdd:COG1196 690 EEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEAleelpeppDLEELEREL 769
|
570 580
....*....|....*....|....*....
gi 1622909575 751 NQQENRNRDLG----REIENLTKELERYR 775
Cdd:COG1196 770 ERLEREIEALGpvnlLAIEEYEELEERYD 798
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
142-708 |
3.50e-17 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 87.43 E-value: 3.50e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 142 ELDKVVEKHKESYRRILGQLLVVEKSHRQTILELEEEKR------KHKEYMEKSDEFICLLEQECERLKKLIDQ------ 209
Cdd:PRK03918 190 NIEELIKEKEKELEEVLREINEISSELPELREELEKLEKevkeleELKEEIEELEKELESLEGSKRKLEEKIREleerie 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 210 EIKSQEEKEQEKEKRVTTLK---EELTKLKSFALMVVDEQQRLTAQLTLQRQKIQELTTNAKETHTKlalaEARVQEEEQ 286
Cdd:PRK03918 270 ELKKEIEELEEKVKELKELKekaEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEK----EERLEELKK 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 287 KATRLEKELQtQTTKFHQDQHTIMAKLTNEdsqnRQLQQKLAALsrqidELEETNRSLRKAEEELQDIKEKISKgeygna 366
Cdd:PRK03918 346 KLKELEKRLE-ELEERHELYEEAKAKKEEL----ERLKKRLTGL-----TPEKLEKELEELEKAKEEIEEEISK------ 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 367 gIMAEVEELRKRVLDMEGKDEELIKMEEQC----RDLNKRLEKETLqsKDFKLEVEKLSKRimaLEKLEDAFNKSKQECY 442
Cdd:PRK03918 410 -ITARIGELKKEIKELKKAIEELKKAKGKCpvcgRELTEEHRKELL--EEYTAELKRIEKE---LKEIEEKERKLRKELR 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 443 SLKCNLEKER--MTTKQLSQELESLKGRIKELEAIESRLEKTEF-TLKEDLTKLKTLTVMFVDERKTMSE---KLKKTED 516
Cdd:PRK03918 484 ELEKVLKKESelIKLKELAEQLKELEEKLKKYNLEELEKKAEEYeKLKEKLIKLKGEIKSLKKELEKLEElkkKLAELEK 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 517 KLQAASSQLQVEQNKVTTVTEKLIEETKRALK----------SKTDVEEKMYSVTKERDDLKNKLKAEEEKGNDLLSRVN 586
Cdd:PRK03918 564 KLDELEEELAELLKELEELGFESVEELEERLKelepfyneylELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLE 643
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 587 MLKNRLQSLEAIEKDFPKNKLNQDSGKSTTALHQENNKIKELSQEVERLKLKLKDMKAIEDDLMKTEDEYETLERryanE 666
Cdd:PRK03918 644 ELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEK----A 719
|
570 580 590 600
....*....|....*....|....*....|....*....|..
gi 1622909575 667 RDKAQFLSKELEHVKMELTKYKLAEKTETSHEqwLFKRLQEE 708
Cdd:PRK03918 720 LERVEELREKVKKYKALLKERALSKVGEIASE--IFEELTEG 759
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
113-775 |
2.46e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 84.72 E-value: 2.46e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 113 KKVLEALQRDAFQAKSapwQEDIYEKPMNELDKVVEKHKESYRRILGQLLvvekSHRQTILELEEEKRKHKEYMEKSDEF 192
Cdd:TIGR02168 245 QEELKEAEEELEELTA---ELQELEEKLEELRLEVSELEEEIEELQKELY----ALANEISRLEQQKQILRERLANLERQ 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 193 ICLLEQECERL--KKLIDQEI-KSQEEKEQEKEKRVTTLKEELTKLKsfalmvvDEQQRLTAQLTLQRQKIQELTTNAKE 269
Cdd:TIGR02168 318 LEELEAQLEELesKLDELAEElAELEEKLEELKEELESLEAELEELE-------AELEELESRLEELEEQLETLRSKVAQ 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 270 THTKLALAEARVQEEEQKATRLEKELQtqttKFHQDQHTIMAKLtnEDSQNRQLQQKLAALSRQIDELEETNRSLRKAEE 349
Cdd:TIGR02168 391 LELQIASLNNEIERLEARLERLEDRRE----RLQQEIEELLKKL--EEAELKELQAELEELEEELEELQEELERLEEALE 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 350 ELQDIKEKISkgeygnagimAEVEELRKRVLDMEGKDEELIKMEEQCRDLNKRLEKETLQSKDFKLEVEKLSKRIMALEK 429
Cdd:TIGR02168 465 ELREELEEAE----------QALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEG 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 430 LEDA----------------FNKSKQECYSLKCNLEKERM--------------TTKQLSQELESLKGRIKELEAIESRL 479
Cdd:TIGR02168 535 YEAAieaalggrlqavvvenLNAAKKAIAFLKQNELGRVTflpldsikgteiqgNDREILKNIEGFLGVAKDLVKFDPKL 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 480 EK-----------------------------TEFTLKEDL-------TKLKTLTVMFVDERKTMSEKLKKTEDKLQAASS 523
Cdd:TIGR02168 615 RKalsyllggvlvvddldnalelakklrpgyRIVTLDGDLvrpggviTGGSAKTNSSILERRREIEELEEKIEELEEKIA 694
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 524 QLQVEQNKVTTVTEKLIEETKRALKSKTDVEekmysvtKERDDLKNKLKAEEEKGNDLLSRVNMLKNRLQSLEAIEkdfp 603
Cdd:TIGR02168 695 ELEKALAELRKELEELEEELEQLRKELEELS-------RQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEI---- 763
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 604 kNKLNQDSGKSTTALHQENNKIKELSQEVERLKlklKDMKAIEDDLMKTEDEYETLERRYANERDKAQFLSKELEHVKME 683
Cdd:TIGR02168 764 -EELEERLEEAEEELAEAEAEIEELEAQIEQLK---EELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERR 839
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 684 LTKYKLAEKTETSHEQWLFKRLQEEEAKSGHLSREVDALKEkihEYMATEDLICHLQGDHSVLQKKLNQQENRNRDLGRE 763
Cdd:TIGR02168 840 LEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLN---ERASLEEALALLRSELEELSEELRELESKRSELRRE 916
|
730
....*....|..
gi 1622909575 764 IENLTKELERYR 775
Cdd:TIGR02168 917 LEELREKLAQLE 928
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
321-785 |
8.63e-16 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 82.80 E-value: 8.63e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 321 RQLQQKLAALSRQIDELEET-------NRSLRKAEEELQDIKEKISKGEYGNAGIMAEVEELR---KRVLDMEGKDEELI 390
Cdd:PRK03918 217 PELREELEKLEKEVKELEELkeeieelEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEekvKELKELKEKAEEYI 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 391 KMEEQCRDLNKRLEKETLQSKDFKLEVEKLSKRIMALEKLEDAFNKSKQECYSLKCNLE------KERMTTKQLSQELES 464
Cdd:PRK03918 297 KLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEeleerhELYEEAKAKKEELER 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 465 LKGRIK--ELEAIESRLEKTEFTLKEDLTKLKTLTVMF------VDERKTMSEKLKKTEDKLQAASSQLQVEQNKvtTVT 536
Cdd:PRK03918 377 LKKRLTglTPEKLEKELEELEKAKEEIEEEISKITARIgelkkeIKELKKAIEELKKAKGKCPVCGRELTEEHRK--ELL 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 537 EKLIEETKRALKSKTDVEEKMYSVTKERDDLKNKLKAEEEkgndlLSRVNMLKNRLQSLEAIEKDFPKNKLNQDsgksTT 616
Cdd:PRK03918 455 EEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESE-----LIKLKELAEQLKELEEKLKKYNLEELEKK----AE 525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 617 ALHQENNKIKELSQEVERLKLKLKDMKAIEDDLMKTEDEYETLERRYAN-ERDKAQFLSKELEHVKMELtkyklaEKTET 695
Cdd:PRK03918 526 EYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAElLKELEELGFESVEELEERL------KELEP 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 696 SHEQWLF-----KRLQEEEAKSGHLSREVDALKEKIHEymaTEDLICHLQGDHSVLQKKLNQQENRN-----RDLGREIE 765
Cdd:PRK03918 600 FYNEYLElkdaeKELEREEKELKKLEEELDKAFEELAE---TEKRLEELRKELEELEKKYSEEEYEElreeyLELSRELA 676
|
490 500
....*....|....*....|
gi 1622909575 766 NLTKELERYRHFSKSLRPSL 785
Cdd:PRK03918 677 GLRAELEELEKRREEIKKTL 696
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
306-772 |
1.66e-15 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 81.65 E-value: 1.66e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 306 QHTIMAKLTNEDSQNRQLQQKLaalsrQIDELEETNRSLRKAEEELQDIKEKISKgeygnagIMAEVEELRKRVLDMEgk 385
Cdd:PRK03918 134 QGEIDAILESDESREKVVRQIL-----GLDDYENAYKNLGEVIKEIKRRIERLEK-------FIKRTENIEELIKEKE-- 199
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 386 dEELIKMEEQCRDLNKRLEKetlqskdFKLEVEKLSKRIMALEKLEDAFNKSKQECYSLKCNLEKERMTTKQLSQELESL 465
Cdd:PRK03918 200 -KELEEVLREINEISSELPE-------LREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEEL 271
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 466 KGRIKELEAIESRLEKTEftlkedltklktltvmfvdERKTMSEKLKKTEDKLQAASSQLQVEQNKVttvtEKLIEETKR 545
Cdd:PRK03918 272 KKEIEELEEKVKELKELK-------------------EKAEEYIKLSEFYEEYLDELREIEKRLSRL----EEEINGIEE 328
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 546 ALKSKTDVEEKMYSVTKERDDLKNKLkAEEEKGNDLLSRVNMLKNRLQSLEAIEKDFPKNKLNQDSGKSTTALHQENNKI 625
Cdd:PRK03918 329 RIKELEEKEERLEELKKKLKELEKRL-EELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEI 407
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 626 KELSQEVERLKLKLKDMKAIEDDLMK------------TEDEYETLERRY-------ANERDKAQFLSKELEHVKMELTK 686
Cdd:PRK03918 408 SKITARIGELKKEIKELKKAIEELKKakgkcpvcgrelTEEHRKELLEEYtaelkriEKELKEIEEKERKLRKELRELEK 487
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 687 yKLAEKTETSHEQWLFKRLQEEEAKSGHLSREvdALKEKIHEYMATEDLICHLQGDHSVLQ---KKLNQQENRNRDLGRE 763
Cdd:PRK03918 488 -VLKKESELIKLKELAEQLKELEEKLKKYNLE--ELEKKAEEYEKLKEKLIKLKGEIKSLKkelEKLEELKKKLAELEKK 564
|
....*....
gi 1622909575 764 IENLTKELE 772
Cdd:PRK03918 565 LDELEEELA 573
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
148-801 |
4.81e-15 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 80.50 E-value: 4.81e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 148 EKHKESYRRILGQLLVVEKSHRQTILELEEEKRKhkeyMEKSDEFICLLEQECERLKKLIDQEIKSQEEKEQEKEKRVTT 227
Cdd:TIGR02169 219 EKREYEGYELLKEKEALERQKEAIERQLASLEEE----LEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKE 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 228 LKEELTKLKSFALMVVDEQQRLTAQLTLQRQKIQELTTNAKETHTKLalaEARVQEEEQKATRLEKELQTQTTKFHqdqh 307
Cdd:TIGR02169 295 KIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEEL---EREIEEERKRRDKLTEEYAELKEELE---- 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 308 TIMAKLTNEDSQNR-------QLQQKLAALSRQIDELEETNRSL----RKAEEELQDIKEKIskgeygnAGIMAEVEELR 376
Cdd:TIGR02169 368 DLRAELEEVDKEFAetrdelkDYREKLEKLKREINELKRELDRLqeelQRLSEELADLNAAI-------AGIEAKINELE 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 377 KRvldMEGKDEELIKMEEQCRDLNKRLEKETLQSKDFKLEVEKLSKRIMALEKLEDAFNKSKQecySLKCNLEKERMTTK 456
Cdd:TIGR02169 441 EE---KEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQAR---ASEERVRGGRAVEE 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 457 QLSQELESLKGRIKEL--------EAIES----RLE----KTEFTLKEDLTKLKT----------LTVMFVDERktMSEK 510
Cdd:TIGR02169 515 VLKASIQGVHGTVAQLgsvgeryaTAIEVaagnRLNnvvvEDDAVAKEAIELLKRrkagratflpLNKMRDERR--DLSI 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 511 LKKT------------EDKLQAASSQ-----LQVE----------QNKVTTVTEKLIEET----------KRALKSKTDV 553
Cdd:TIGR02169 593 LSEDgvigfavdlvefDPKYEPAFKYvfgdtLVVEdieaarrlmgKYRMVTLEGELFEKSgamtggsrapRGGILFSRSE 672
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 554 EEKMYSVTKERDDLKNKLKAEEEKGNDLLSRVNMLKNRL----QSLEAIEKDfpKNKLNQDSGKSTTALHQENNKIKELS 629
Cdd:TIGR02169 673 PAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELsdasRKIGEIEKE--IEQLEQEEEKLKERLEELEEDLSSLE 750
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 630 QEVERLKLKLKDMKA----IEDDLMKTEDEYETLERRYANERdkAQFLSKELEHVKMELTKYKLAEKTETSHEQWLFKRL 705
Cdd:TIGR02169 751 QEIENVKSELKELEArieeLEEDLHKLEEALNDLEARLSHSR--IPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEK 828
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 706 QEEEAKSGHLSREVDALKEKIHEYMATEDLichLQGDHSVLQKKLNQQENRNRDLGREIENLTKELERYRhfsKSLRPSL 785
Cdd:TIGR02169 829 EYLEKEIQELQEQRIDLKEQIKSIEKEIEN---LNGKKEELEEELEELEAALRDLESRLGDLKKERDELE---AQLRELE 902
|
730
....*....|....*.
gi 1622909575 786 NGRRISDTQVFSKEVQ 801
Cdd:TIGR02169 903 RKIEELEAQIEKKRKR 918
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
187-731 |
4.95e-15 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 80.11 E-value: 4.95e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 187 EKSDEFICLLEQECERLKKLIDQEiksqeekeQEKEKRVTTLKEELTKLKSFALMVVDEQQRLTAQLTLQRQKIQELttn 266
Cdd:PRK03918 165 KNLGEVIKEIKRRIERLEKFIKRT--------ENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKEL--- 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 267 aKETHTKLALAEARVQEEEQKATRLEkelqtqttkfhqdqhtimAKLTNEDSQNRQLQQKLAALS---RQIDELEETNRS 343
Cdd:PRK03918 234 -EELKEEIEELEKELESLEGSKRKLE------------------EKIRELEERIEELKKEIEELEekvKELKELKEKAEE 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 344 LRKAEEELQDIKEKISKGEYGNAGIMAEVEELRKRVLDMEGKDEELIKMEEQCRDLNKRLEK------------------ 405
Cdd:PRK03918 295 YIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEEleerhelyeeakakkeel 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 406 ETLQSKDFKLEVEKLSKRIMALEKLEDAFNKSKQECYSLKCNLEKERMTTKQLSQELESLKGR----------------- 468
Cdd:PRK03918 375 ERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKcpvcgrelteehrkell 454
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 469 ---IKELEAIESRLEKTEFTLKEDLTKLKTLTVMFVDER-----KTMSEKLKKTEDKLQAAS-SQLQVEQNKVTTVTEKL 539
Cdd:PRK03918 455 eeyTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESeliklKELAEQLKELEEKLKKYNlEELEKKAEEYEKLKEKL 534
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 540 IEETKRALKSKTDVEEKMySVTKERDDLKNKLKAEEEKGNDLLSR--------VNMLKNRLQSLEAIEKDFPKNK----- 606
Cdd:PRK03918 535 IKLKGEIKSLKKELEKLE-ELKKKLAELEKKLDELEEELAELLKEleelgfesVEELEERLKELEPFYNEYLELKdaeke 613
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 607 ---LNQDSGKSTTALHQENNKIKELSQEVERLKLKLKDMKAI--EDDLMKTEDEYETLERRYANERDKAQFLSKELEHVK 681
Cdd:PRK03918 614 lerEEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKysEEEYEELREEYLELSRELAGLRAELEELEKRREEIK 693
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|
gi 1622909575 682 MELTKYKlAEKTEtsheqwlFKRLQEEEAKSGHLSREVDALKEKIHEYMA 731
Cdd:PRK03918 694 KTLEKLK-EELEE-------REKAKKELEKLEKALERVEELREKVKKYKA 735
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
208-604 |
1.21e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 79.33 E-value: 1.21e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 208 DQEIKSQEEKEQEKEKRVTTLKEELTKLKsfalmvvDEQQRLTAQLTLQRQKIQELTTNAKETHTKLALAEARVQEEEQK 287
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELR-------KELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEER 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 288 ATRLEKE---LQTQTTKFHQDQHTIMAKLTNEDSQNRQLQQKLAALSRQIDELEETnrsLRKAEEELQDIKEKISKGEYG 364
Cdd:TIGR02168 749 IAQLSKElteLEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREA---LDELRAELTLLNEEAANLRER 825
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 365 NAGIMAEVEELRKRVLDMEgkdEELIKMEEQCRDLNKRLEKETLQSKDFKLEVEKLSKRIMALEKLEDAFNKSKQECYSL 444
Cdd:TIGR02168 826 LESLERRIAATERRLEDLE---EQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEE 902
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 445 KCNLEKERMTTKQLSQELEslkgriKELEAIESRLEKTEFTLKEDLTKLKTLTVMFVDERKTMSEKLKKTEDKLQAASSQ 524
Cdd:TIGR02168 903 LRELESKRSELRRELEELR------EKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKR 976
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 525 LQVEQNKVTTVTEKLIEETKralksktDVEEKMYSVTKERDDLKNKLKAEEEKGNDLLSRVnmlKNRLQ-SLEAIEKDFP 603
Cdd:TIGR02168 977 LENKIKELGPVNLAAIEEYE-------ELKERYDFLTAQKEDLTEAKETLEEAIEEIDREA---RERFKdTFDQVNENFQ 1046
|
.
gi 1622909575 604 K 604
Cdd:TIGR02168 1047 R 1047
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
141-786 |
2.82e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 78.17 E-value: 2.82e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 141 NELDKVVEKHKESYRRILGQLLVVEkshrqtiLELEEEKRKHKEYMEKSDEficlLEQECERLKKLID---QEIKSQEEK 217
Cdd:TIGR02168 298 SRLEQQKQILRERLANLERQLEELE-------AQLEELESKLDELAEELAE----LEEKLEELKEELEsleAELEELEAE 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 218 EQEKEKRVTTLKEELTKLKSFALMVVDEQQRLTAQLTLQRQKIQELTTNAKETHTKLALAEARVQEEEQKATRLE-KELQ 296
Cdd:TIGR02168 367 LEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAElEELE 446
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 297 TQTTKFHQDQHTIMAKLTNEDSQNRQLQQKLAALSRQIDELEETNRSLRKAEEELQD---------------------IK 355
Cdd:TIGR02168 447 EELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGfsegvkallknqsglsgilgvLS 526
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 356 EKIS-KGEYGNA------------------GIMAEVEELRK----RVL----------DMEGKDEELIKMEEQCRDLNKR 402
Cdd:TIGR02168 527 ELISvDEGYEAAieaalggrlqavvvenlnAAKKAIAFLKQnelgRVTflpldsikgtEIQGNDREILKNIEGFLGVAKD 606
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 403 LEKetlQSKDFKLEVEKLSKRIMALEKLEDAFNKSKQE----------------CYSLKCNLEKERMTTKQLSQELESLK 466
Cdd:TIGR02168 607 LVK---FDPKLRKALSYLLGGVLVVDDLDNALELAKKLrpgyrivtldgdlvrpGGVITGGSAKTNSSILERRREIEELE 683
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 467 GRIKELEAIESRLEKTEFTLKEDLtklktltvmfvDERKTMSEKLKKTEDKLQAASSQLQVEQNKVTTVTEKLIEETKRA 546
Cdd:TIGR02168 684 EKIEELEEKIAELEKALAELRKEL-----------EELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQL 752
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 547 LKSKTDVEEKMYSVTKERDDLKNKLKAEEEKGNDLLSRVNMLKNRLQSLEAIEKDFPK--NKLNQDSGKSTTALHQENNK 624
Cdd:TIGR02168 753 SKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAelTLLNEEAANLRERLESLERR 832
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 625 IKELSQEVERLKLKLKDMKAIEDDLMKTEDEYETLERRyanerdkaqfLSKELEHVKMELTKYKLAEKTETSHEQWLFKR 704
Cdd:TIGR02168 833 IAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEE----------LESELEALLNERASLEEALALLRSELEELSEE 902
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 705 LQEEEAKSGHLSREVDALKEKIHEYMATEDlicHLQGDHSVLQKKLNQQENRN-RDLGREIENLTKELERYRHFSKSLRP 783
Cdd:TIGR02168 903 LRELESKRSELRRELEELREKLAQLELRLE---GLEVRIDNLQERLSEEYSLTlEEAEALENKIEDDEEEARRRLKRLEN 979
|
...
gi 1622909575 784 SLN 786
Cdd:TIGR02168 980 KIK 982
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
169-799 |
4.37e-14 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 77.49 E-value: 4.37e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 169 RQTILELEEEKRKHKEYMEKSDEFICLLEQECERLKKLIDQEIKSQEEKEQEKEKRVT-TLKEELTKLKSFALMVVDEQQ 247
Cdd:PTZ00121 1104 KKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEdARKAEEARKAEDAKKAEAARK 1183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 248 RLTAQLTLQRQKIQEL--TTNAKETHTKLALAEARVQEEEQKATRLEKelqTQTTKFHQDQHTIMAKLTNEDSQNRQLQQ 325
Cdd:PTZ00121 1184 AEEVRKAEELRKAEDArkAEAARKAEEERKAEEARKAEDAKKAEAVKK---AEEAKKDAEEAKKAEEERNNEEIRKFEEA 1260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 326 KLAALSRQIDELEETNRslRKAEEeLQDIKEKISKGEYGNAGIMAEVEELRKRVLDMEGKDEELIKMEE---QCRDLNKR 402
Cdd:PTZ00121 1261 RMAHFARRQAAIKAEEA--RKADE-LKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEakkKADAAKKK 1337
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 403 LEKETLQSKDFKLEVEKLSKRIMALEKLEDAFNKSKQECYSLKCNLEK---ERMTTKQLSQELESLKGRIKELEAIESRL 479
Cdd:PTZ00121 1338 AEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKkaeEKKKADEAKKKAEEDKKKADELKKAAAAK 1417
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 480 EKTEFTLK--EDLTKLKTLTVMfVDERKTMSEKLKKTEDKLQAASSQLQVEQNKVTTVTEKLIEETKRALKSKTDVEEKM 557
Cdd:PTZ00121 1418 KKADEAKKkaEEKKKADEAKKK-AEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAK 1496
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 558 YSVTKERDDLKNKLKAEEEKGNDLLSRVNMLKNRLQSLEAIEKDFPKNKLNQDSGKSTTALH--QENNKIKELSQEVERL 635
Cdd:PTZ00121 1497 KKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKkaEEKKKAEEAKKAEEDK 1576
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 636 KLKLK---DMKAIE----DDLMKTEDEYETLE----RRYANERDKAQFLSKElEHVKMELTKYKLAEKTETSHEQWLFKR 704
Cdd:PTZ00121 1577 NMALRkaeEAKKAEeariEEVMKLYEEEKKMKaeeaKKAEEAKIKAEELKKA-EEEKKKVEQLKKKEAEEKKKAEELKKA 1655
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 705 LQEEEAKSGHLSREVDALKEKIHEYMATEDlichlqgdhsvLQKKLNQQENRNRDLGREIENLTKELERYRHFSKSLRPS 784
Cdd:PTZ00121 1656 EEENKIKAAEEAKKAEEDKKKAEEAKKAEE-----------DEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKA 1724
|
650
....*....|....*
gi 1622909575 785 LNGRRISDTQVFSKE 799
Cdd:PTZ00121 1725 EEENKIKAEEAKKEA 1739
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
169-520 |
6.26e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 77.02 E-value: 6.26e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 169 RQTILELEEEKRKHKEYMEKSDEFICLLEQECERLKKL---IDQEIKSQEEKEQEKEKRVTTLKEELTKLKSFALMVVDE 245
Cdd:TIGR02168 669 NSSILERRREIEELEEKIEELEEKIAELEKALAELRKEleeLEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEER 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 246 QQRLTAQLTLQRQKIQELTTNAKETHTKLALAEARVQEEEQKATRLEKELQTQTTKF----------HQDQHTIMAKLTN 315
Cdd:TIGR02168 749 IAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALdelraeltllNEEAANLRERLES 828
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 316 EDSQNRQLQQKLAALSRQIDELEETNRSLRKAEEELQDIKEKISKGEYGNAGIMAEVEELRKRV-LDMEGKDEELIKMEE 394
Cdd:TIGR02168 829 LERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLrSELEELSEELRELES 908
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 395 QCRDLNKRLEKETLQSKDFKLEVEKLSKRIMAL-EKLEDAFNKSKQECYSLKCNLEKERMttkQLSQELESLKGRIKEL- 472
Cdd:TIGR02168 909 KRSELRRELEELREKLAQLELRLEGLEVRIDNLqERLSEEYSLTLEEAEALENKIEDDEE---EARRRLKRLENKIKELg 985
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 1622909575 473 -------EAIESRLEKTEF--TLKEDLTKLKTlTVMFVDER--KTMSEKLKKTEDKLQA 520
Cdd:TIGR02168 986 pvnlaaiEEYEELKERYDFltAQKEDLTEAKE-TLEEAIEEidREARERFKDTFDQVNE 1043
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
142-598 |
8.09e-14 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 76.23 E-value: 8.09e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 142 ELDKVVEKHKESYRRILGQLLVVEKShRQTILELEEEKRKHKEYMEKSDEFICLLEQECERLK---KLIDQEIKSQEEKE 218
Cdd:PRK02224 238 EADEVLEEHEERREELETLEAEIEDL-RETIAETEREREELAEEVRDLRERLEELEEERDDLLaeaGLDDADAEAVEARR 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 219 QEKEKRVTTLKEELTKLKSFALMVVDEQQRLTAQLTLQRQKIQELTTNAKETHTKLALAEARVQEEEQKATRLEKELQTQ 298
Cdd:PRK02224 317 EELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEEL 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 299 TTKFHQdqhtIMAKLTNEDSQNRQLQQKLAALSRQIDELEETNRSLRKAEEELQDIKEKISKGEYG----NAGIMAEVEE 374
Cdd:PRK02224 397 RERFGD----APVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGqpveGSPHVETIEE 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 375 LRKRVLDMEgkdEELIKMEEQCRDLNKRLEK-----------ETLQSK---------DFKLEVEKLSKRIMAL----EKL 430
Cdd:PRK02224 473 DRERVEELE---AELEDLEEEVEEVEERLERaedlveaedriERLEERredleeliaERRETIEEKRERAEELreraAEL 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 431 EDAFNKSKQECYSLKCNLEKERMTTKQLSQELESLKGRIKELEAIESRLEKTEfTLKEDLTKLKtltvmfvDERKTMSEK 510
Cdd:PRK02224 550 EAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIA-DAEDEIERLR-------EKREALAEL 621
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 511 LKKTEDKLQAAS---SQL--QVEQNKVttvtEKLIEETKRALKSKTDVEEKMYSVTKERDDLKNK---LKAEEEKGNDLL 582
Cdd:PRK02224 622 NDERRERLAEKRerkRELeaEFDEARI----EEAREDKERAEEYLEQVEEKLDELREERDDLQAEigaVENELEELEELR 697
|
490
....*....|....*.
gi 1622909575 583 SRVNMLKNRLQSLEAI 598
Cdd:PRK02224 698 ERREALENRVEALEAL 713
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
339-678 |
3.08e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 74.71 E-value: 3.08e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 339 ETNRSLRKAEEELQDIKEKISKGEygnagimAEVEELRKRVLDME----GKDEELIKMEEQCRDLNKRLEKETLQSKDFK 414
Cdd:TIGR02168 674 ERRREIEELEEKIEELEEKIAELE-------KALAELRKELEELEeeleQLRKELEELSRQISALRKDLARLEAEVEQLE 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 415 LEVEKLSKRIMAL----EKLEDAFNKSKQECYSLKCNLEKERMTTKQLSQELESLKGRIKELEAIESRLEKTEFTLKEDL 490
Cdd:TIGR02168 747 ERIAQLSKELTELeaeiEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERL 826
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 491 TKLKTLTVMFVDERKTMSEKLKKTEDKLQAASSqlqvEQNKVTTVTEKLIEETKRALKSKTDVEEKMYSVTKERDDLKNK 570
Cdd:TIGR02168 827 ESLERRIAATERRLEDLEEQIEELSEDIESLAA----EIEELEELIEELESELEALLNERASLEEALALLRSELEELSEE 902
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 571 LKAEEEKGNDLL-------SRVNMLKNRLQSLEAIEKDFpKNKLNQDsGKSTTALHQEN-----NKIKELSQEVERLKLK 638
Cdd:TIGR02168 903 LRELESKRSELRreleelrEKLAQLELRLEGLEVRIDNL-QERLSEE-YSLTLEEAEALenkieDDEEEARRRLKRLENK 980
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 1622909575 639 LKDMKAIEddlMKTEDEYETLERRYanerdkaQFLSKELE 678
Cdd:TIGR02168 981 IKELGPVN---LAAIEEYEELKERY-------DFLTAQKE 1010
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
172-787 |
4.17e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 74.33 E-value: 4.17e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 172 ILELEEEKRKHKEYME----KSDEFICLLEQECERLKKLIDQEIKSQEEKEQEKEKRVTTLKEELTKLKSfalmVVDEQQ 247
Cdd:TIGR02169 165 VAEFDRKKEKALEELEeveeNIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEA----LERQKE 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 248 RLTAQLTLQRQKIQELTtnakethtklalaeARVQEEEQKATRLEKELQTQTTKfhqdqhtIMAKLTNEdsqNRQLQQKL 327
Cdd:TIGR02169 241 AIERQLASLEEELEKLT--------------EEISELEKRLEEIEQLLEELNKK-------IKDLGEEE---QLRVKEKI 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 328 AALSRQI----DELEETNRSLRKAEEELQDIKEKISKGEYGNAGIMAEVEELRKRVLDMEgkdEELIKMEEQCRDLNKRL 403
Cdd:TIGR02169 297 GELEAEIasleRSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLT---EEYAELKEELEDLRAEL 373
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 404 EKEtlqSKDFKLEVEKLSKRIMALEKLEDAFNKSKQECYSLKCNLEKERMTTKQLSQELESLKGRIKELEaieSRLEKTE 483
Cdd:TIGR02169 374 EEV---DKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELE---EEKEDKA 447
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 484 FTLKEDLTKLKTLTVMFVDERKTM---SEKLKKTEDKLQAASSQL-------------QVEQNKVTTVTEKLIEETKRAL 547
Cdd:TIGR02169 448 LEIKKQEWKLEQLAADLSKYEQELydlKEEYDRVEKELSKLQRELaeaeaqaraseerVRGGRAVEEVLKASIQGVHGTV 527
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 548 KSKTDVEEK------------MYSVTKERDD--------LK------------NKLKAEE-------EKG---------- 578
Cdd:TIGR02169 528 AQLGSVGERyataievaagnrLNNVVVEDDAvakeaielLKrrkagratflplNKMRDERrdlsilsEDGvigfavdlve 607
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 579 -------------------NDL-LSRVNMLKNRLQSLE--------AIEKDFPKNKLNQDSGKSTTA-LHQENNKIKELS 629
Cdd:TIGR02169 608 fdpkyepafkyvfgdtlvvEDIeAARRLMGKYRMVTLEgelfeksgAMTGGSRAPRGGILFSRSEPAeLQRLRERLEGLK 687
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 630 QEVERLKLKLKDMK------------------AIEDDLMKTEDEYETLERRYANERDKAQFLSKELEHVKMELTKY--KL 689
Cdd:TIGR02169 688 RELSSLQSELRRIEnrldelsqelsdasrkigEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELeaRI 767
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 690 AEKTETSHEqwLFKRLQEEEAK-SGHLSREVDALKEKIHEYMA--------TEDLICHLQGDHSVLQKKLNQQENRNRDL 760
Cdd:TIGR02169 768 EELEEDLHK--LEEALNDLEARlSHSRIPEIQAELSKLEEEVSriearlreIEQKLNRLTLEKEYLEKEIQELQEQRIDL 845
|
730 740 750 760
....*....|....*....|....*....|....*....|.
gi 1622909575 761 -------GREIENLTK-------ELERYRHFSKSLRPSLNG 787
Cdd:TIGR02169 846 keqiksiEKEIENLNGkkeeleeELEELEAALRDLESRLGD 886
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
243-691 |
9.23e-13 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 72.49 E-value: 9.23e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 243 VDEQQRLTAQLTLQRQKIQELTTNAKETHTKLALAEARVQEEEQKATRLEKELQTQTTkfHQDQHTIMAKLTNEDSQNRQ 322
Cdd:COG4717 73 LKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPL--YQELEALEAELAELPERLEE 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 323 LQQKLAALSRQIDELEETNRSLRKAEEELQDIKEKISKGEYGNAGIMAE-VEELRKRVLDMEgkdEELIKMEEQCRDLNK 401
Cdd:COG4717 151 LEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEeLEELQQRLAELE---EELEEAQEELEELEE 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 402 RLEKETLQSKDFKLEvEKLSKR---------IMALEKLEDAFNKSKQEC-----------YSLKCNLEKERMTTKQLSQE 461
Cdd:COG4717 228 ELEQLENELEAAALE-ERLKEArlllliaaaLLALLGLGGSLLSLILTIagvlflvlgllALLFLLLAREKASLGKEAEE 306
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 462 LESLkGRIKELEAIESRLEKTEFTLKEDLTKLktltvmFVDERKTMSEKLKKTEDKLQAASSQLQVEQnkvttvteklIE 541
Cdd:COG4717 307 LQAL-PALEELEEEELEELLAALGLPPDLSPE------ELLELLDRIEELQELLREAEELEEELQLEE----------LE 369
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 542 ETKRALKSKTDVEEkmysvtkeRDDLKNKLKAEEEKgNDLLSRVNMLKNRLQSL----EAIEKDFPKNKLNQDSGKSTTA 617
Cdd:COG4717 370 QEIAALLAEAGVED--------EEELRAALEQAEEY-QELKEELEELEEQLEELlgelEELLEALDEEELEEELEELEEE 440
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622909575 618 LHQENNKIKELSQEVERLKLKLKDMKAiEDDLMKTEDEYETLE---RRYANERDKAQFLSKELEHVKMELTKYKLAE 691
Cdd:COG4717 441 LEELEEELEELREELAELEAELEQLEE-DGELAELLQELEELKaelRELAEEWAALKLALELLEEAREEYREERLPP 516
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
283-676 |
1.17e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 72.79 E-value: 1.17e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 283 EEEQKATRLEKELQtqttKFHQDQHTIMAKLTNEDSQNRQLQQKLAALSRQIDEL----EETNRSLRKAEEELQDIKEKI 358
Cdd:TIGR02169 671 SEPAELQRLRERLE----GLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIekeiEQLEQEEEKLKERLEELEEDL 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 359 SKGEYGNAGIMAEVEELRKRVLDMEgkdEELIKMEEQCRDLNKRLEKETLQSKDFKL-----EVEKLSKRIMALEKLEDA 433
Cdd:TIGR02169 747 SSLEQEIENVKSELKELEARIEELE---EDLHKLEEALNDLEARLSHSRIPEIQAELskleeEVSRIEARLREIEQKLNR 823
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 434 FNKSKQECYSLKCNLEKERMTTK----QLSQELESLKGRIKELEAIESRLEKTEFTLKEDLTKLKTltvmfvdERKTMSE 509
Cdd:TIGR02169 824 LTLEKEYLEKEIQELQEQRIDLKeqikSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKK-------ERDELEA 896
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 510 KLKKTEDKLQAASSQLQVEqnkvttvtEKLIEETKRALKSKTDvEEKMYsvtkerddLKNKLKAEEEKGNDLlsrvnmlk 589
Cdd:TIGR02169 897 QLRELERKIEELEAQIEKK--------RKRLSELKAKLEALEE-ELSEI--------EDPKGEDEEIPEEEL-------- 951
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 590 nrlqSLEaiekdfpknklnqdsgksttalhqennKIKELSQEVERlklklkDMKAIEDDLMKTEDEYETLERRYANERDK 669
Cdd:TIGR02169 952 ----SLE---------------------------DVQAELQRVEE------EIRALEPVNMLAIQEYEEVLKRLDELKEK 994
|
....*..
gi 1622909575 670 AQFLSKE 676
Cdd:TIGR02169 995 RAKLEEE 1001
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
125-810 |
2.94e-12 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 71.30 E-value: 2.94e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 125 QAKSAPWQEDIYEKPMNELDKVVEKHKESYRRILGQLlvvEKSHRQTILELEEEKRKHKEYMEksdeficlleqECERLK 204
Cdd:pfam15921 286 KASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDL---ESTVSQLRSELREAKRMYEDKIE-----------ELEKQL 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 205 KLIDQEIKSQEEKEQEKEKRVTTLKEELTKLksfalmVVDEQQRlTAQLTLQRQKIQELTTNAKETHTKLALAEARVQEE 284
Cdd:pfam15921 352 VLANSELTEARTERDQFSQESGNLDDQLQKL------LADLHKR-EKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDR 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 285 EQKATRLEKELQTQTTKFHQDQHTIMAKLTNED-------SQNRQLQQKLAALSRQIDELEETNRSLRKAEEELQDIKEK 357
Cdd:pfam15921 425 NMEVQRLEALLKAMKSECQGQMERQMAAIQGKNeslekvsSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTAS 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 358 ISKGEYGNAGIMAEVEELRKRVlDMEGKDEELIKME-EQCRDLNKRLEKETLQSKDFKLEVEKLSKRIMALEKLEDAFNK 436
Cdd:pfam15921 505 LQEKERAIEATNAEITKLRSRV-DLKLQELQHLKNEgDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGR 583
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 437 SKQECYSLKCNLEKERMTTKQLSQELESLK----GRIKELEAIESRLEKTEFTL----KEDLTKLKTLTvmfvDERKTMS 508
Cdd:pfam15921 584 TAGAMQVEKAQLEKEINDRRLELQEFKILKdkkdAKIRELEARVSDLELEKVKLvnagSERLRAVKDIK----QERDQLL 659
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 509 EKLKKTEDKLQAASSQLQVEQNKVTTVTEKLiEETKRALKSktdveeKMYSVTKERDDLKNKLKAEEEKGNDLLS----- 583
Cdd:pfam15921 660 NEVKTSRNELNSLSEDYEVLKRNFRNKSEEM-ETTTNKLKM------QLKSAQSELEQTRNTLKSMEGSDGHAMKvamgm 732
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 584 ---------RVNMLKNRLQSLEAI------EKDF---PKNKLNQDSGKSTTALHQENNKIKELSQEVERLKLKLKDMKAI 645
Cdd:pfam15921 733 qkqitakrgQIDALQSKIQFLEEAmtnankEKHFlkeEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVA 812
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 646 EDDLMKTEDEYETLERRYANE--RDKAQFL--SKELE---HVKMELTKYKLAEKTETSHEQWLFKRLQEEEAKSGHLSRE 718
Cdd:pfam15921 813 LDKASLQFAECQDIIQRQEQEsvRLKLQHTldVKELQgpgYTSNSSMKPRLLQPASFTRTHSNVPSSQSTASFLSHHSRK 892
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 719 VDALKEKiheymATEDLICHLQGDHSVLQKKLNQQENRNRDLGRE---------IENLTKELERYRHFSKSLRPSLNGRR 789
Cdd:pfam15921 893 TNALKED-----PTRDLKQLLQELRSVINEEPTVQLSKAEDKGRApslgalddrVRDCIIESSLRSDICHSSSNSLQTEG 967
|
730 740
....*....|....*....|..
gi 1622909575 790 ISDTQVFSKE-VQTEAVDNEPP 810
Cdd:pfam15921 968 SKSSETCSREpVLLHAGELEDP 989
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
300-678 |
4.12e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.86 E-value: 4.12e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 300 TKFHQDQHTIMAKL--TNEDSQnrQLQQKLAALSRQIDELEetnRSLRKAEE--ELQDIKEKISKGEYGNagimaEVEEL 375
Cdd:TIGR02168 168 SKYKERRKETERKLerTRENLD--RLEDILNELERQLKSLE---RQAEKAERykELKAELRELELALLVL-----RLEEL 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 376 RKRvldMEGKDEELIKMEEQCRDLNKRLEKETLQSKDFKLEVEKLSKRIMALEKledafnkskqECYSLKCNLEKERMTT 455
Cdd:TIGR02168 238 REE---LEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQK----------ELYALANEISRLEQQK 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 456 KQLSQELESLKGRIKELEAIESRLEKTEFTLKEDLTKLKTLTVMFVDERKTMSEKLKKTEDKLQAASSQLQVEQNKVTTV 535
Cdd:TIGR02168 305 QILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETL 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 536 TEKLIEetkralksktdVEEKMYSVTKERDDLKNKLKAEEEKGNDLLSRVNMLKNRLQSLEAIEKDFPKNKLNQDSGKST 615
Cdd:TIGR02168 385 RSKVAQ-----------LELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQ 453
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1622909575 616 TALHQENNKIKELSQEVERLKLKLKDMKAIEDDLMKTEDEYETLERRYANERDKAQFLSKELE 678
Cdd:TIGR02168 454 EELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQS 516
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
114-771 |
2.22e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 68.63 E-value: 2.22e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 114 KVLEALQRDAFQAKSAPwqediyEKPMNELDKVVEKHKESYRRILGQLLVVEKSHRQTILELEEEKRKHKEyMEKSDEfi 193
Cdd:PTZ00121 1230 KKAEEAKKDAEEAKKAE------EERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADE-AKKAEE-- 1300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 194 cllEQECERLKKLIDQEIKSQEEKEqekekrvttlKEELTKLKSFALMVVDEQQRLTAQLtlQRQKIQELTTNAKETHTK 273
Cdd:PTZ00121 1301 ---KKKADEAKKKAEEAKKADEAKK----------KAEEAKKKADAAKKKAEEAKKAAEA--AKAEAEAAADEAEAAEEK 1365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 274 LALAEARVQEEEQKATRLEKELQtqttkfHQDQHTIMAKLTNEDSQNRQLQQKLAALSRQIDELEETNRSLRKAEEELQD 353
Cdd:PTZ00121 1366 AEAAEKKKEEAKKKADAAKKKAE------EKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKK 1439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 354 IKEKiskgeygnagimAEVEELRKRVLDMEgKDEELIKMEEQCR--DLNKRLEKETLQSKDFKLEVEKLSKRIMALEKLE 431
Cdd:PTZ00121 1440 AEEA------------KKADEAKKKAEEAK-KAEEAKKKAEEAKkaDEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAA 1506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 432 DAFNKSKQecysLKCNLEKERMTTKQLSQEleslKGRIKELEAIESRLEKTEFTLKEDLTKlktltvmfVDERKTMSEKL 511
Cdd:PTZ00121 1507 EAKKKADE----AKKAEEAKKADEAKKAEE----AKKADEAKKAEEKKKADELKKAEELKK--------AEEKKKAEEAK 1570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 512 KKTEDKLQAASSQLQVEQnkvttvteklIEETKRALKSKTDVEEKMYSVTKERDDLKNKLKAEEEKGNDllsRVNMLKNR 591
Cdd:PTZ00121 1571 KAEEDKNMALRKAEEAKK----------AEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAE---EEKKKVEQ 1637
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 592 LQSLEAIEKdfpknKLNQDSGKSttalhQENNKIK--ELSQEVERLKLKLKDMKAIEDDLMKTEDEYetleRRYANERDK 669
Cdd:PTZ00121 1638 LKKKEAEEK-----KKAEELKKA-----EEENKIKaaEEAKKAEEDKKKAEEAKKAEEDEKKAAEAL----KKEAEEAKK 1703
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 670 AQFLSKELEHVKMELTKYKLAEKTETSHEQWLfKRLQEEEAKSGHLSREVDALKEKIHEYMATEDLICH--LQGDHSVLQ 747
Cdd:PTZ00121 1704 AEELKKKEAEEKKKAEELKKAEEENKIKAEEA-KKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEeiRKEKEAVIE 1782
|
650 660
....*....|....*....|....
gi 1622909575 748 KKLNQQENRNRdlgREIENLTKEL 771
Cdd:PTZ00121 1783 EELDEEDEKRR---MEVDKKIKDI 1803
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
175-767 |
2.78e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.04 E-value: 2.78e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 175 LEEEKRKHKEYMEKSDEF------ICLLE-QECERLKKLIDQEIKSQEEKEQEKEKRVTTLKEELTKLKSFALMVVDEQQ 247
Cdd:COG1196 205 LERQAEKAERYRELKEELkeleaeLLLLKlRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELE 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 248 RLTAQLTLQRQKIQELTTN---AKETHTKLALAEARVQEEEQKATRLEKELQTQTTKFHQDQHTIMAKLTNEDSQNRQLQ 324
Cdd:COG1196 285 EAQAEEYELLAELARLEQDiarLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAE 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 325 QKLAALSRQIDELEETNRSLRKAEEELQDIKEKISkgeygnagimAEVEELRKRVLDMEGKDEELikmEEQCRDLNKRLE 404
Cdd:COG1196 365 EALLEAEAELAEAEEELEELAEELLEALRAAAELA----------AQLEELEEAEEALLERLERL---EEELEELEEALA 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 405 KETLQSKDFKLEVEKLSKRIMALEKLEDAFNKSKQECYSLKCNLEKERMTTKQLSQELESLKGRIKELEAI-ESRLEKTE 483
Cdd:COG1196 432 ELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADyEGFLEGVK 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 484 FTLKEDLTKLKTLTVmfVDERKTMSEKLKKTEDKLQAASSQLQVEQnkvTTVTEKLIEETKRALKSKtdveekmysVTKE 563
Cdd:COG1196 512 AALLLAGLRGLAGAV--AVLIGVEAAYEAALEAALAAALQNIVVED---DEVAAAAIEYLKAAKAGR---------ATFL 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 564 RDdlkNKLKAEEEKGNDLLSRVNMLKNRLQSLEAIEKDFPKNKLNQDSGKSTTALHQENNKIKELSQEVERLKLKLKDMK 643
Cdd:COG1196 578 PL---DKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGE 654
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 644 AIEDDLMKTEDEYETLERRYANERDKAQFLSKELEHVKMELTKYKLAEKTETSHEQWLFKRLQEEEAKSGHLSREVDALK 723
Cdd:COG1196 655 GGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAER 734
|
570 580 590 600
....*....|....*....|....*....|....*....|....*
gi 1622909575 724 EKIHEYMATEDLICHLQGDHSVLQK-KLNQQENRNRDLGREIENL 767
Cdd:COG1196 735 EELLEELLEEEELLEEEALEELPEPpDLEELERELERLEREIEAL 779
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
173-709 |
3.18e-11 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 68.15 E-value: 3.18e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 173 LELEEEKRKHKEYMEKS-DEFICLLEQECERLKKLIDQEIKSQEEKEQEKEKRVTTLKEELTKLKSFALMVVDEQQRLTA 251
Cdd:TIGR00606 375 TRLELDGFERGPFSERQiKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQE 454
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 252 QLTLQRQKIQELTTNAKETHTKlalaEARVQEEEQKATRLEKELQTQTTKfhQDQHTIMAKLTNEDSQNRQLQQKLAALS 331
Cdd:TIGR00606 455 ELKFVIKELQQLEGSSDRILEL----DQELRKAERELSKAEKNSLTETLK--KEVKSLQNEKADLDRKLRKLDQEMEQLN 528
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 332 RQIDELEETNRSLRK---AEEELQDIKEKISKGEYGNAGIMAEVEELRKRvldMEGKDEELIKMEEQCRDLNKRLEKETL 408
Cdd:TIGR00606 529 HHTTTRTQMEMLTKDkmdKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDW---LHSKSKEINQTRDRLAKLNKELASLEQ 605
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 409 QSKDFKLEVEKLSKRIMALE-KLEDAFNKSKQECY--SLKCNLEKERMTTKQLSQELESLKGRIKELEAIES-------R 478
Cdd:TIGR00606 606 NKNHINNELESKEEQLSSYEdKLFDVCGSQDEESDleRLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQsccpvcqR 685
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 479 LEKTEFTLKEDLTKLKTLTVMFVDERKTMSEKLKKTEDKLQAASSQLQVEQNKVTTVTEKLIEETKRALKSKTDVEEKMY 558
Cdd:TIGR00606 686 VFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKN 765
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 559 SVTKERDDLKNkLKAEEEKGNDLLSRVNMLKNRLQSLEAIEKDFPKNKLNQDSGKSTTALHQENNKIKE-------LSQE 631
Cdd:TIGR00606 766 DIEEQETLLGT-IMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEkqheldtVVSK 844
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 632 VERLKLKLKDMKAIEDDLMKTEDEYETLERRYANERDKAQFLSKELEHVKMEL----TKYKLAEKTETSHEQWLFKRLQE 707
Cdd:TIGR00606 845 IELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVqsliREIKDAKEQDSPLETFLEKDQQE 924
|
..
gi 1622909575 708 EE 709
Cdd:TIGR00606 925 KE 926
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
278-694 |
4.70e-11 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 67.37 E-value: 4.70e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 278 EARVQEEEQKATRLEKELQTQTTKFHQDQHTIMAKLTNEDSQNRQLQQKLAALSRQIDELEETNRSLRKAEEELQDIKEK 357
Cdd:PRK02224 187 GSLDQLKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRET 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 358 ISKGEYGNAGIMAEVEELRKRVLDMEGKD---------------------EELIKMEEQCRDlnkRLEKETLQSKDFKLE 416
Cdd:PRK02224 267 IAETEREREELAEEVRDLRERLEELEEERddllaeaglddadaeavearrEELEDRDEELRD---RLEECRVAAQAHNEE 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 417 VEKLSKRIMALE----KLEDAFNKSKQECYSLKCNLEKERMTTKQLSQELESLKGRIK----ELEAIESRLEKTEFTLKE 488
Cdd:PRK02224 344 AESLREDADDLEeraeELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGdapvDLGNAEDFLEELREERDE 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 489 DLTKLKTLTVmfvdERKTMSEKLKKTEDKLQAAS--------------SQLQVEQNKVTTVTEKL--IEETKRALKSKTD 552
Cdd:PRK02224 424 LREREAELEA----TLRTARERVEEAEALLEAGKcpecgqpvegsphvETIEEDRERVEELEAELedLEEEVEEVEERLE 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 553 VEEKMYSVTKERDDLKNKLKAEEEKGNDLLSRVNMLKNRLQSL---------EAIEKDFPKNKLNQDSGKSTTALHQENN 623
Cdd:PRK02224 500 RAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELreraaeleaEAEEKREAAAEAEEEAEEAREEVAELNS 579
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622909575 624 KIKELSQEVERLklklkdmKAIEDDLMKTEDEYETLERRyaNERDKAQflsKELEhvkmELTKYKLAEKTE 694
Cdd:PRK02224 580 KLAELKERIESL-------ERIRTLLAAIADAEDEIERL--REKREAL---AELN----DERRERLAEKRE 634
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
172-683 |
1.89e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 65.43 E-value: 1.89e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 172 ILELEEEKRKHKEYMEKSDEFICLLEQECERLKKLIDQEIKsqeekeqekekRVTTLKEELTKLKSfalmVVDEQQRLTA 251
Cdd:TIGR04523 126 LNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKK-----------QKEELENELNLLEK----EKLNIQKNID 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 252 QLTLQRQKIQELTTNAKETHTKLALAEARVQEEEQKATRLEKELQTQTTKFhQDQHTIMAKLTNEDSQNRQLQQK-LAAL 330
Cdd:TIGR04523 191 KIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEI-NEKTTEISNTQTQLNQLKDEQNKiKKQL 269
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 331 SRQIDELEETNRSLRKAEEELQDIKEKISK-GEYGNAGIMAEV-EELRKRVLDMEGKDEELIKMEEQCRDLNKRL----- 403
Cdd:TIGR04523 270 SEKQKELEQNNKKIKELEKQLNQLKSEISDlNNQKEQDWNKELkSELKNQEKKLEEIQNQISQNNKIISQLNEQIsqlkk 349
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 404 EKETLQSKDFKLEvEKLSKRIMALEKLEDAFNKSKQECYSLKCNLEKERMTTKQLSQELESLKGRIKELEAIESRLEKTE 483
Cdd:TIGR04523 350 ELTNSESENSEKQ-RELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEI 428
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 484 FTLKEDLTKLKTLTVMFVDERKTMSEKLKKTEDKLQAASSQLQVEQNKVTTVTEKLiEETKRALKSKTDveeKMYSVTKE 563
Cdd:TIGR04523 429 ERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNL-EQKQKELKSKEK---ELKKLNEE 504
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 564 RDDLKNKLKAEEEKGNDLLSRVNMLKNRLQSLEAIEKDFPKNKLNQDSGKSTTALHQE----NNKIKELSQEVERLKlkl 639
Cdd:TIGR04523 505 KKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEidekNKEIEELKQTQKSLK--- 581
|
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 1622909575 640 KDMKAIEDDLMKTEDEYETLERRYANERDKAQFLSKELEHVKME 683
Cdd:TIGR04523 582 KKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKE 625
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
169-772 |
2.31e-10 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 65.38 E-value: 2.31e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 169 RQTILELEEEKRKHKEYMEKSDEFICLLEqECERLKKLIDQEIKSQEEKEQEKEKRVT---TLKEELTKLKSFALMVVDE 245
Cdd:pfam02463 166 RLKRKKKEALKKLIEETENLAELIIDLEE-LKLQELKLKEQAKKALEYYQLKEKLELEeeyLLYLDYLKLNEERIDLLQE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 246 QQRLTAQLTLQRQKIQEL-TTNAKETHTKLALAEARVQEEEQKATRLEKELQTQTTKFHQDQHTIMA---KLTNEDSQNR 321
Cdd:pfam02463 245 LLRDEQEEIESSKQEIEKeEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDdeeKLKESEKEKK 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 322 QLQQKLAALSRQIDELEETNRSLRKAEEELQDIKEKISKgeygnagIMAEVEELRKRVLDMEGKDEELIKMEEQCRDLNK 401
Cdd:pfam02463 325 KAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEK-------LQEKLEQLEEELLAKKKLESERLSSAAKLKEEEL 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 402 RLEKETLQSKDFKLEvekLSKRIMALEKLEDAFNKSKQECYSLKCNLEKERMTTKQLSQELESLKGRIKELEAI-ESRLE 480
Cdd:pfam02463 398 ELKSEEEKEAQLLLE---LARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKkSEDLL 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 481 KTEFTLKEDLTKLKTLTVMFVDERKTMSEKLKKTEDKLQAASSQLQVEQNKVTTVTEKLIEETKRALKSKTDVEEKMYSV 560
Cdd:pfam02463 475 KETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVS 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 561 TKERDDLKNKLKAEEEKGNDLLSRVNMLKNRLQSLEA------------IEKDFPKNKLNQDSGKSTTALHQENNKIKEL 628
Cdd:pfam02463 555 ATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLksiavleidpilNLAQLDKATLEADEDDKRAKVVEGILKDTEL 634
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 629 SQEVERLKLKL----KDMKAIEDDLMKTEDEYETLE--RRYANERDKAQFLSKELEHVKMELTKYKLAEKTETSHEQWLF 702
Cdd:pfam02463 635 TKLKESAKAKEsglrKGVSLEEGLAEKSEVKASLSEltKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKK 714
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622909575 703 KRLQEEEAKSGHLSREVD-------ALKEKIHEYMATEDLICHLQGDHSVLQKKLNQQENRNRDLGREIENLTKELE 772
Cdd:pfam02463 715 LKLEAEELLADRVQEAQDkineelkLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEE 791
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
262-771 |
3.65e-10 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 64.36 E-value: 3.65e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 262 ELTTNAKETHTKLALAEARVQEEEQKATRLEKELQTQTTKFHQDQHTIMAKLTNEDSQNRQLQQKLAALSRQIDELEETN 341
Cdd:pfam05483 212 EMHFKLKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKK 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 342 RSLRKaeeELQDIKEKISKGEYGNAGIMAEVEELRKRVLDM----EGKDEELIK------------------MEEQCRDL 399
Cdd:pfam05483 292 DHLTK---ELEDIKMSLQRSMSTQKALEEDLQIATKTICQLteekEAQMEELNKakaahsfvvtefeattcsLEELLRTE 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 400 NKRLEKETLQSKDFKLEVEKLSKRIMALEKLEDAFNKSKQECYSLKCNLEKERMTTKQLSQELESLKGRIKELEAIESRL 479
Cdd:pfam05483 369 QQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAR 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 480 EKTEFTLKEDLTKLKTLTVMFVDERKTM-----SEKLKKTEdkLQAASSQLQVEQNKVTTVTEKLIEETK---------- 544
Cdd:pfam05483 449 EKEIHDLEIQLTAIKTSEEHYLKEVEDLkteleKEKLKNIE--LTAHCDKLLLENKELTQEASDMTLELKkhqediinck 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 545 ----RALKSKTDVEEK-------MYSVTKE----RDDLKNKLKAEEEKGNDLLSRVNMLKNRLQSLEAIEKDFPKNKLNQ 609
Cdd:pfam05483 527 kqeeRMLKQIENLEEKemnlrdeLESVREEfiqkGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENK 606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 610 DsgKSTTALHQENNKIKELSQEverlklKLKDMKAIEDDLMKTEDEYETLERRYANERDKAQflsKELEHVKmeLTKYKL 689
Cdd:pfam05483 607 N--KNIEELHQENKALKKKGSA------ENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQ---KEIEDKK--ISEEKL 673
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 690 AEKTETSH--EQWLFKRLQEEEAKSGHLSREVDALKEK-IHEYmatEDLICHLQGDHSVLQKKLNQQENRNRDLGREIEN 766
Cdd:pfam05483 674 LEEVEKAKaiADEAVKLQKEIDKRCQHKIAEMVALMEKhKHQY---DKIIEERDSELGLYKNKEQEQSSAKAALEIELSN 750
|
....*
gi 1622909575 767 LTKEL 771
Cdd:pfam05483 751 IKAEL 755
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
224-777 |
4.46e-10 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 64.47 E-value: 4.46e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 224 RVTTLKEELTKLKSFALMVVDEQQRLTAQLTLQRQKIQELTTNAKETHTKLALAEARVQEeeqKATRLEKELQTQTTKFH 303
Cdd:pfam12128 242 EFTKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKE---KRDELNGELSAADAAVA 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 304 QDQHTIMAKltneDSQNRQLQQ----KLAALSRQID----ELEETNRSLRKAEEELQDIKEKIskgeygNAGIMAEVEEL 375
Cdd:pfam12128 319 KDRSELEAL----EDQHGAFLDadieTAAADQEQLPswqsELENLEERLKALTGKHQDVTAKY------NRRRSKIKEQN 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 376 rkrVLDMEGKDEELIKMEEQcRDLNKRLEKETLQSKDFKLEveklskrimalEKLEDAFNKSKQECYSLKCNLEKERMTT 455
Cdd:pfam12128 389 ---NRDIAGIKDKLAKIREA-RDRQLAVAEDDLQALESELR-----------EQLEAGKLEFNEEEYRLKSRLGELKLRL 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 456 KQLSQELESLKgrikELEAIESRLEKTEFTLKEDLTKLKTLTvmfvDERKTMSEKLKKTEDKLQAASSQLQVEQNKVTTV 535
Cdd:pfam12128 454 NQATATPELLL----QLENFDERIERAREEQEAANAEVERLQ----SELRQARKRRDQASEALRQASRRLEERQSALDEL 525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 536 TEKLIEETKRAL----KSKTDVEEKMYSVTKE----RDDLKNKLKAEEEKGNDLLSRVNMlknRLQSLEAIEKDFPKNKL 607
Cdd:pfam12128 526 ELQLFPQAGTLLhflrKEAPDWEQSIGKVISPellhRTDLDPEVWDGSVGGELNLYGVKL---DLKRIDVPEWAASEEEL 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 608 NQDSGKSTTALHQENNKIKELSQ-------EVERLKLKLKDMKAI----EDDLMKTEDEYETLERR----YANERDKAQF 672
Cdd:pfam12128 603 RERLDKAEEALQSAREKQAAAEEqlvqangELEKASREETFARTAlknaRLDLRRLFDEKQSEKDKknkaLAERKDSANE 682
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 673 LSKELEHVKMELT---KYKLAEKTETSHE---QWLFKRLQEEEAKSGHLSReVDALKEKIHEYMATEDLICHLQGDHSVl 746
Cdd:pfam12128 683 RLNSLEAQLKQLDkkhQAWLEEQKEQKREartEKQAYWQVVEGALDAQLAL-LKAAIAARRSGAKAELKALETWYKRDL- 760
|
570 580 590
....*....|....*....|....*....|.
gi 1622909575 747 qKKLNQQENRNRDLGREIENLTKELERYRHF 777
Cdd:pfam12128 761 -ASLGVDPDVIAKLKREIRTLERKIERIAVR 790
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
245-728 |
7.91e-10 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 63.52 E-value: 7.91e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 245 EQQRLTAQLTLQR------------QKIQELTTNAKETHTKLALAEARVQEEEQKATRLEKELQtqttkfhqdqhTIMAK 312
Cdd:PRK02224 233 RETRDEADEVLEEheerreeletleAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERD-----------DLLAE 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 313 LTNEDSQNRQLQQKLAALSRQIDELEETnrslrkAEEELQDIKEKISkgeygnagimaEVEELRKRVLDMEGKDEELikm 392
Cdd:PRK02224 302 AGLDDADAEAVEARREELEDRDEELRDR------LEECRVAAQAHNE-----------EAESLREDADDLEERAEEL--- 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 393 EEQCRDLNKRLEKETLQSKDFKLEVEKLSKRIMALEK----LEDAFNKSKQECYSLKCNLEKERMTTKQLSQELESLKGR 468
Cdd:PRK02224 362 REEAAELESELEEAREAVEDRREEIEELEEEIEELRErfgdAPVDLGNAEDFLEELREERDELREREAELEATLRTARER 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 469 IKE----------------------LEAIESRLEKTEfTLKEDLTKLKTlTVMFVDERKTMSEKLKKTE-------DKLQ 519
Cdd:PRK02224 442 VEEaealleagkcpecgqpvegsphVETIEEDRERVE-ELEAELEDLEE-EVEEVEERLERAEDLVEAEdrierleERRE 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 520 AASSQLQVEQNKVTTVTEKLIEETKRALKSKTDVEEKMYSVTKERDdlknklKAEE--EKGNDLLSRVNMLKNRLQSLEA 597
Cdd:PRK02224 520 DLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEE------EAEEarEEVAELNSKLAELKERIESLER 593
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 598 IEKDFpknklnqdsgksttalhqenNKIKELSQEVERLKLKLKDMKAIEDdlmkteDEYETLERRyaneRDKAQFLSKEL 677
Cdd:PRK02224 594 IRTLL--------------------AAIADAEDEIERLREKREALAELND------ERRERLAEK----RERKRELEAEF 643
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 1622909575 678 EHVKMELTKYKLaEKTETSHEQwLFKRLQEEEAKSGHLSREVDALKEKIHE 728
Cdd:PRK02224 644 DEARIEEAREDK-ERAEEYLEQ-VEEKLDELREERDDLQAEIGAVENELEE 692
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
142-678 |
1.18e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.65 E-value: 1.18e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 142 ELDKVVEKHKESYRRILGQLLVVEKSHRQTILELEEEKRKHKEYMEKSDEficlLEQECERLkkliDQEIKSQEEKEQEK 221
Cdd:COG1196 243 ELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYE----LLAELARL----EQDIARLEERRREL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 222 EKRVTTLKEELTKLKsfalmvvDEQQRLTAQLTLQRQKIQELTTNAKETHTKLALAEARVQEEEQKATRLEKELQTQTTK 301
Cdd:COG1196 315 EERLEELEEELAELE-------EELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEE 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 302 FHQDQHTIMAKLTNEDSQNRQLQQKLAALSRQIDELEETNRSLRKAEEELQDIKEKISKGEYGNAGIMAEVEELRKRVLD 381
Cdd:COG1196 388 LLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAE 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 382 MEGKDEELIKMEEQCRDLNKRLEKETLQSKDFKLEVEKLSKRIMALEKLEDAFNKS------------------------ 437
Cdd:COG1196 468 LLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAgavavligveaayeaaleaalaaa 547
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 438 ------------KQECYSLKCN-------LEKERMTTKQLSQELESLKGRIKELEAIESRLEKTE-------FTLKEDLT 491
Cdd:COG1196 548 lqnivveddevaAAAIEYLKAAkagratfLPLDKIRARAALAAALARGAIGAAVDLVASDLREADaryyvlgDTLLGRTL 627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 492 KLKTLTVMFVDERKTMSEKLKKTEDKLQAASSQLQVEQNKVTTVTEKLIEETKRALKSKTDVEEKMYSVTK--ERDDLKN 569
Cdd:COG1196 628 VAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEAllAEEEEER 707
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 570 KLKAEEEKGNDLLSRVNMLKNRLQSLEAIEKDFpKNKLNQDSGKSTTALHQENNKIKELSQEVERLKLKLKDMKAIEddl 649
Cdd:COG1196 708 ELAEAEEERLEEELEEEALEEQLEAEREELLEE-LLEEEELLEEEALEELPEPPDLEELERELERLEREIEALGPVN--- 783
|
570 580
....*....|....*....|....*....
gi 1622909575 650 MKTEDEYETLERRYanerdkaQFLSKELE 678
Cdd:COG1196 784 LLAIEEYEELEERY-------DFLSEQRE 805
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
325-736 |
1.21e-09 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 62.48 E-value: 1.21e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 325 QKLAALSRQIDELEETNRSLRKAEEELQDIKEKISKGEygnagimAEVEELRKRVLDMEgKDEELIKMEEQCRDLNKRLE 404
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEELEELE-------AELEELREELEKLE-KLLQLLPLYQELEALEAELA 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 405 KETLQSKDFKLEVEKLSKRIMALEKLEDAFNKSKQECYSLKCNL-EKERMTTKQLSQELESLKGRIKELEAIESRLEKTE 483
Cdd:COG4717 143 ELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLsLATEEELQDLAEELEELQQRLAELEEELEEAQEEL 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 484 FTLKEDLTKLKTLTvmfvdERKTMSEKLKKTEDKLQAASSQLQVE------------------------------QNKVT 533
Cdd:COG4717 223 EELEEELEQLENEL-----EAAALEERLKEARLLLLIAAALLALLglggsllsliltiagvlflvlgllallfllLAREK 297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 534 TVTEKLIEETkRALKSKTDVEEKMYSVTKERDDLKNKLKAEE--------EKGNDLLSRVNMLKNRLQsLEAIEKDFPK- 604
Cdd:COG4717 298 ASLGKEAEEL-QALPALEELEEEELEELLAALGLPPDLSPEEllelldriEELQELLREAEELEEELQ-LEELEQEIAAl 375
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 605 -NKLNQDSGKSTTALHQENNKIKELSQEVERLKLKLKDMKAIEDDLMKTEDEyETLERRYANERDKAQFLSKELEHVKME 683
Cdd:COG4717 376 lAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDE-EELEEELEELEEELEELEEELEELREE 454
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 1622909575 684 LTKYKLA-EKTETSHEqwLFKRLQEEEaksgHLSREVDALKEKIHEYMATEDLI 736
Cdd:COG4717 455 LAELEAElEQLEEDGE--LAELLQELE----ELKAELRELAEEWAALKLALELL 502
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
136-643 |
4.83e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 60.80 E-value: 4.83e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 136 YEKPMNELDKVVEKHKESYRRILGQLLVVEkshrQTILELEEEKRKHKEYMEKSDEficlLEQECERLKKLID---QEIK 212
Cdd:TIGR04523 171 LENELNLLEKEKLNIQKNIDKIKNKLLKLE----LLLSNLKKKIQKNKSLESQISE----LKKQNNQLKDNIEkkqQEIN 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 213 SQEEKEQEKEKRVTTLKEELTKLKsfalmvvDEQQRLTAQLTLQRQKIQELTTNAKETHTKLAlaearvQEEEQKATRLE 292
Cdd:TIGR04523 243 EKTTEISNTQTQLNQLKDEQNKIK-------KQLSEKQKELEQNNKKIKELEKQLNQLKSEIS------DLNNQKEQDWN 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 293 KELQTQTTKFHQDQHTIMAKLTNEDSQNRQLQQKLAALSRQIDELEETNRSLRKAEEELQDIKEKISKgeygnagimaev 372
Cdd:TIGR04523 310 KELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKK------------ 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 373 eelrkrvlDMEGKDEELIKMEEQCRDLNKRLEKETLQS-------KDFKLEVEKLSKRIMAL----EKLEDAFNKSKQEC 441
Cdd:TIGR04523 378 --------ENQSYKQEIKNLESQINDLESKIQNQEKLNqqkdeqiKKLQQEKELLEKEIERLketiIKNNSEIKDLTNQD 449
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 442 YSLKCNLEKERMTTKQLSQELESLKGRIKEleaIESRLEKTEFTLKEDLTKLKTLTvmfvDERKTMSEKLKKTEDKlQAA 521
Cdd:TIGR04523 450 SVKELIIKNLDNTRESLETQLKVLSRSINK---IKQNLEQKQKELKSKEKELKKLN----EEKKELEEKVKDLTKK-ISS 521
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 522 SSQLQVEQNKVTTVTEKLIEETKRALKSKtDVEEKMYSVTKERDDLKNKLKAEEEKGNDLLSRVNMLKNRLQSLEAIEKD 601
Cdd:TIGR04523 522 LKEKIEKLESEKKEKESKISDLEDELNKD-DFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKD 600
|
490 500 510 520
....*....|....*....|....*....|....*....|..
gi 1622909575 602 FPKNKLNQDSGKSTtaLHQENNKIKELSQEVERLKLKLKDMK 643
Cdd:TIGR04523 601 LIKEIEEKEKKISS--LEKELEKAKKENEKLSSIIKNIKSKK 640
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
227-577 |
5.17e-09 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 60.76 E-value: 5.17e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 227 TLKEELTKLKSFALMVVDEQQRLTAQLTLQRQKIQELTTNAKETHTKLALAEARVQEEEQKATRLEKELQTQTTKFHQDQ 306
Cdd:pfam02463 663 EVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLK 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 307 HTIMAKLTNED----SQNRQLQQKLAALSRQIDELEETNRSLRKAEEELQDIKEKISKGEYGNAGIMAEVEELRKRVLDM 382
Cdd:pfam02463 743 QKIDEEEEEEEksrlKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQL 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 383 EGKDEELIKMEEQCRDLNKRLEKETLQSKDFKLEVEKLSKRIMALEKLEDAFNKSKQECYSLKCNLEKERMTTKQLSQEL 462
Cdd:pfam02463 823 LIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKEL 902
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 463 ESLKGRIKELEAIESRLEKTEFTLKEDLTKLKTLTVMFVDERKTMSEKLKKTEDKLQAASSQLQVEQNKVTTVTEKLIEE 542
Cdd:pfam02463 903 EEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEE 982
|
330 340 350
....*....|....*....|....*....|....*
gi 1622909575 543 TKRALKSKTDVEEKMYSVTKERDDLKNKLKAEEEK 577
Cdd:pfam02463 983 FEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQ 1017
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
414-678 |
1.35e-08 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 59.17 E-value: 1.35e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 414 KLEVEKLSKRIMALEKLEDAFNKSKQecYSLKCNLEKERMTTKQLSQELESLKGRIKELEAIESRLEKteftLKEDLTKL 493
Cdd:PRK05771 39 ELSNERLRKLRSLLTKLSEALDKLRS--YLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKE----LEEEISEL 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 494 KtltvmfvDERKTMSEKLKKTEdKLQAASSQLQVEQN-KVTTVTEKLIEETKralksktdveekmYSVTKERDDLKNKLK 572
Cdd:PRK05771 113 E-------NEIKELEQEIERLE-PWGNFDLDLSLLLGfKYVSVFVGTVPEDK-------------LEELKLESDVENVEY 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 573 AEEEKGNDLLSRVNmLKNRLQSLEAI--EKDFPKNKLNqDSGKSTTALHQENNKIKELSQEVERLKLKLKDMKAIEDDLM 650
Cdd:PRK05771 172 ISTDKGYVYVVVVV-LKELSDEVEEElkKLGFERLELE-EEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEEL 249
|
250 260
....*....|....*....|....*...
gi 1622909575 651 KTEDEYetlerrYANERDKAQFLSKELE 678
Cdd:PRK05771 250 LALYEY------LEIELERAEALSKFLK 271
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
174-473 |
1.40e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 59.31 E-value: 1.40e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 174 ELEEEKRKHKEYMEKSDEFICLLEQECERLKklidQEIKSQEEKEQEKEKRVTTLKEELTKLK-----SFALMVVDEQQR 248
Cdd:TIGR02169 727 QLEQEEEKLKERLEELEEDLSSLEQEIENVK----SELKELEARIEELEEDLHKLEEALNDLEarlshSRIPEIQAELSK 802
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 249 LTAQLTLQRQKIQELTTNAKETHTKLALAEARVQEEEQKATRLE---KELQTQTTKFHQDQHTIMAKLTNEDSQNRQLQQ 325
Cdd:TIGR02169 803 LEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKeqiKSIEKEIENLNGKKEELEEELEELEAALRDLES 882
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 326 KLAALSRQIDELEEtnrSLRKAEEELQDIKekiskgeygnagimAEVEELRKRVLDMEGKDEELIKMEEQCRDLNKRLE- 404
Cdd:TIGR02169 883 RLGDLKKERDELEA---QLRELERKIEELE--------------AQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEe 945
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622909575 405 --KETLQSKDFKLEVEKLSKRIMALE----KLEDAFNKSKQECYSLKCNLEKermttkqLSQELESLKGRIKELE 473
Cdd:TIGR02169 946 ipEEELSLEDVQAELQRVEEEIRALEpvnmLAIQEYEEVLKRLDELKEKRAK-------LEEERKAILERIEEYE 1013
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
143-577 |
1.54e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 59.01 E-value: 1.54e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 143 LDKVVEKHKESYRRILGQLLVVEKSH-RQTILELEEEKRKHKEYMEKSDEfICLLEQECERLKKlidqeiksqeekeqek 221
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNLKElKELEEELKEAEEKEEEYAELQEE-LEELEEELEELEA---------------- 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 222 ekRVTTLKEELTKLKSF--ALMVVDEQQRLTAQLTLQRQKIQELTTNAKETHTKLALAEARVQEEEQKATRLEKELQTQT 299
Cdd:COG4717 110 --ELEELREELEKLEKLlqLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLS 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 300 TKFHQDQHTIMAKLTNEDSQNRQLQQKLAALSRQIDELEEtNRSLRKAEEELQDIKEKISKGEYG--------------- 364
Cdd:COG4717 188 LATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEE-ELEQLENELEAAALEERLKEARLLlliaaallallglgg 266
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 365 ---------------NAGIMAEVEELRKRVLDMEGKDEELIKMEEQCRDLNKRLEKETLQSKDFK--LEVEKLSKRIMAL 427
Cdd:COG4717 267 sllsliltiagvlflVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPpdLSPEELLELLDRI 346
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 428 EKLEDAFNKSKQecyslkcnlEKERMTTKQLSQELESL--KGRIKELEAIESRLEKTEfTLKEDLTKLKTLTVMFVDERK 505
Cdd:COG4717 347 EELQELLREAEE---------LEEELQLEELEQEIAALlaEAGVEDEEELRAALEQAE-EYQELKEELEELEEQLEELLG 416
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622909575 506 TMSEKLKKT-----EDKLQAASSQLQVEQNKVTTVTEKL--IEETKRALKSKTDVEEKMYsvtkERDDLKNKLKAEEEK 577
Cdd:COG4717 417 ELEELLEALdeeelEEELEELEEELEELEEELEELREELaeLEAELEQLEEDGELAELLQ----ELEELKAELRELAEE 491
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
247-781 |
1.56e-08 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 59.03 E-value: 1.56e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 247 QRLTAQLTLQRQKIQELTTNAKETHTKLALAEARVQEEEQKATRLEKELQTQTTKFHQDQHTImakLTNEDSQNR----- 321
Cdd:pfam01576 78 HELESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDI---LLLEDQNSKlsker 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 322 -QLQQKLAALSRQIDELEETNRSLRKA----EEELQDIKEKISKGEYGNagimAEVEELrKRVLDMEGKD--EELIKMEE 394
Cdd:pfam01576 155 kLLEERISEFTSNLAEEEEKAKSLSKLknkhEAMISDLEERLKKEEKGR----QELEKA-KRKLEGESTDlqEQIAELQA 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 395 QCRDLNKRLEK--ETLQSKDFKLEvEKLSKRIMALEKLEDAFNKSKQecysLKCNLEKERMTTKQLSQELESLKgriKEL 472
Cdd:pfam01576 230 QIAELRAQLAKkeEELQAALARLE-EETAQKNNALKKIRELEAQISE----LQEDLESERAARNKAEKQRRDLG---EEL 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 473 EAIESRLEKTEFTLKEDlTKLKTltvmfvdERKTMSEKLKKT-EDKLQAASSQLQVEQNKVTTVTEKLIEETKRALKSKT 551
Cdd:pfam01576 302 EALKTELEDTLDTTAAQ-QELRS-------KREQEVTELKKAlEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKA 373
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 552 DVEEKMYSVTKERDDLKNKLKAEEEKGNDLLSRVNMLKNRLQSLEA--IEKDFPKNKLNQDSGKS-------TTALHQEN 622
Cdd:pfam01576 374 NLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQArlSESERQRAELAEKLSKLqselesvSSLLNEAE 453
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 623 NKIKELSQEVERLKLKLKDMK-----------AIEDDLMKTEDEYETLERRYANERDKAQFLSKELEHVKMEL--TKYKL 689
Cdd:pfam01576 454 GKNIKLSKDVSSLESQLQDTQellqeetrqklNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLsdMKKKL 533
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 690 AEKTETSHeqwlfkrlQEEEAKSgHLSREVDALKEKIHEYMATEDlichlqgdhsvlqkKLNQQENRnrdLGREIENLTK 769
Cdd:pfam01576 534 EEDAGTLE--------ALEEGKK-RLQRELEALTQQLEEKAAAYD--------------KLEKTKNR---LQQELDDLLV 587
|
570
....*....|..
gi 1622909575 770 ELERYRHFSKSL 781
Cdd:pfam01576 588 DLDHQRQLVSNL 599
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
196-772 |
1.71e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 58.88 E-value: 1.71e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 196 LEQECERLKKLIDQ---EIKSQEEKEQEKEKRVTTLKEELTKLKSfalmvvdEQQRLTAQLTLQRQKIQELTTNAKETHT 272
Cdd:TIGR04523 38 LEKKLKTIKNELKNkekELKNLDKNLNKDEEKINNSNNKIKILEQ-------QIKDLNDKLKKNKDKINKLNSDLSKINS 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 273 KLALAEARVQEEEQKATRLEKELQtqttKFHQDQHTIMAKLTNEDSQNRQLQQKLAALSRQIDELE----ETNRSLRKAE 348
Cdd:TIGR04523 111 EIKNDKEQKNKLEVELNKLEKQKK----ENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELEnelnLLEKEKLNIQ 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 349 EELQDIKEKISKGEY----------GNAGIMAEVEELRKRVL-----------DMEGKDEELIKMEEQCRDLNKRLEKET 407
Cdd:TIGR04523 187 KNIDKIKNKLLKLELllsnlkkkiqKNKSLESQISELKKQNNqlkdniekkqqEINEKTTEISNTQTQLNQLKDEQNKIK 266
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 408 LQSKDFKLEVEKLSKRImalEKLEDAFNKSKQECYSLkcNLEKERMTTKQLSQELESLKGRIKELEAIESRLEKTEFTLK 487
Cdd:TIGR04523 267 KQLSEKQKELEQNNKKI---KELEKQLNQLKSEISDL--NNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLN 341
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 488 EDLTKLKTLTVMFVDERKTMSEKLKKTEDKLQ-----------------AASSQLQVEQNKVTTVTEKLIEETKRALKSK 550
Cdd:TIGR04523 342 EQISQLKKELTNSESENSEKQRELEEKQNEIEklkkenqsykqeiknleSQINDLESKIQNQEKLNQQKDEQIKKLQQEK 421
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 551 TDVEEKMYSVTKERDDLKNKLKAEEEKGNDLLSRVNMLKNRLQSLEAIEKDFPK--NKLNQDSGKSTTALHQENNKIKEL 628
Cdd:TIGR04523 422 ELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRsiNKIKQNLEQKQKELKSKEKELKKL 501
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 629 SQEVERLKLKLKDMKAIEDDLMKTEDEYETLERRYANERDKaqfLSKELEHVKMELTKYKLAEK--------TETSHEQW 700
Cdd:TIGR04523 502 NEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISD---LEDELNKDDFELKKENLEKEideknkeiEELKQTQK 578
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1622909575 701 LFKRLQEE-EAKSGHLSREVDALKEKIHEYMATEdlichlqgdhSVLQKKLNQQENRNRDLGREIENLTKELE 772
Cdd:TIGR04523 579 SLKKKQEEkQELIDQKEKEKKDLIKEIEEKEKKI----------SSLEKELEKAKKENEKLSSIIKNIKSKKN 641
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
330-657 |
2.45e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.41 E-value: 2.45e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 330 LSRQIDELEetnRSLRKAEE--ELQDIKEKISKGEYGNagimaeveELRKRVLDMEGKDEELIKMEEQCRDLNKRLEKET 407
Cdd:COG1196 198 LERQLEPLE---RQAEKAERyrELKEELKELEAELLLL--------KLRELEAELEELEAELEELEAELEELEAELAELE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 408 LQSKDFKLEVEKLSKRIMALEKLEDAFNKSKQECYSlkcNLEKERMTTKQLSQELESLKGRIKELEAIESRLEKTEFTLK 487
Cdd:COG1196 267 AELEELRLELEELELELEEAQAEEYELLAELARLEQ---DIARLEERRRELEERLEELEEELAELEEELEELEEELEELE 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 488 EDLTKLKTltvmfvdERKTMSEKLKKTEDKLQAASSQLQVEQNKVTTVTEKLIEETKRALKSKTDVEEKMYSVTKERDDL 567
Cdd:COG1196 344 EELEEAEE-------ELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERL 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 568 KNKLKAEEEKGNDLLSRVNMLKNRLQSLEAIEKDfpKNKLNQDSGKSTTALHQENNKIKELSQEVERLKLKLKDMKAIED 647
Cdd:COG1196 417 ERLEEELEELEEALAELEEEEEEEEEALEEAAEE--EAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLL 494
|
330
....*....|
gi 1622909575 648 DLMKTEDEYE 657
Cdd:COG1196 495 LLLEAEADYE 504
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
113-653 |
3.27e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 58.23 E-value: 3.27e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 113 KKVLEALQRDAFQAKSAPWQEDIYEKPMNELDKVVEKHKESYRRILGQLLVVEKSHRQTILELEEEKRKHKEYMEKSDEf 192
Cdd:PTZ00121 1377 KKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEE- 1455
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 193 icllEQECERLKKLIDQEIKSQEEKEQEKEKRVT---TLKEELTKLKSFALMVVDEQQRLTAQLTLQRQKIQelTTNAKE 269
Cdd:PTZ00121 1456 ----AKKAEEAKKKAEEAKKADEAKKKAEEAKKAdeaKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKK--ADEAKK 1529
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 270 THTKLALAEARVQEEEQKATRLEK--------ELQTQTTKFHQDQHTIMAKLTNEDSQNRQLQQKLAALSRQIDELEETN 341
Cdd:PTZ00121 1530 AEEAKKADEAKKAEEKKKADELKKaeelkkaeEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKA 1609
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 342 RSLRKAEEE---------LQDIKEKISKGEYGNAGIMAEVEELRKRVLDMEGKDEELIKMEEQCRDLNKRLEKETLQSKD 412
Cdd:PTZ00121 1610 EEAKKAEEAkikaeelkkAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKK 1689
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 413 FKLEVEKLSKRIMALEKLEDAFNKSKQECYSLKCNLEKERMTTKQLSQELESLKGRIKELEAIESRLEKTEFTLKEDLTK 492
Cdd:PTZ00121 1690 AAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKK 1769
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 493 LKTLTvmfVDERKTMSEKLKKTEDKLQAassQLQVEQNKVTTVTEKLIEETKRALKSKTDVEEKMYSVTKERDDLKNKLK 572
Cdd:PTZ00121 1770 AEEIR---KEKEAVIEEELDEEDEKRRM---EVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQL 1843
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 573 AEEEkgndllsrvnmlknrlqslEAIEKDFPKNKLNQDSGKSTTALHQENNKIKELSQEVErlklKLKDMKAIEDDLMKT 652
Cdd:PTZ00121 1844 EEAD-------------------AFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIE----EADEIEKIDKDDIER 1900
|
.
gi 1622909575 653 E 653
Cdd:PTZ00121 1901 E 1901
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
318-837 |
6.83e-08 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 57.40 E-value: 6.83e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 318 SQNRQLQQKLAALSRQIDELEETNRSLRKAEEELQDIKEKISKGEYGnagimaEVEELRKRVLDMEgkdEELIKMEEQcr 397
Cdd:COG5022 806 LGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFG------RSLKAKKRFSLLK---KETIYLQSA-- 874
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 398 dlnKRLEKETLQSKDFKLEVEKLSKRIMALEKLEDA---FNKSKQECYSLKCNLEKERMTT-KQLSQELESLKGRIKELE 473
Cdd:COG5022 875 ---QRVELAERQLQELKIDVKSISSLKLVNLELESEiieLKKSLSSDLIENLEFKTELIARlKKLLNNIDLEEGPSIEYV 951
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 474 ---------AIESRLEKTEFTLkEDLTKLKTLTVmfvDERKTMSEKLKKTEDKLQAASSQLQVEQNKVttvteKLIEETK 544
Cdd:COG5022 952 klpelnklhEVESKLKETSEEY-EDLLKKSTILV---REGNKANSELKNFKKELAELSKQYGALQEST-----KQLKELP 1022
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 545 RALKSKTDVEEKMYSVTKErddLKNKLKAEEEKGNDLLSrVNMLKNRLQSLEaIEKDFPKNKLNQDSGKSTTalhqeNNK 624
Cdd:COG5022 1023 VEVAELQSASKIISSESTE---LSILKPLQKLKGLLLLE-NNQLQARYKALK-LRRENSLLDDKQLYQLEST-----ENL 1092
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 625 IKElsqeverlkLKLKDMKAIEDDLMKTEDEYETL---ERRYANERDKAQFLSKELEHVKMELTKYKLAEKT-------- 693
Cdd:COG5022 1093 LKT---------INVKDLEVTNRNLVKPANVLQFIvaqMIKLNLLQEISKFLSQLVNTLEPVFQKLSVLQLEldglfwea 1163
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 694 ---ETSHEQWlFKRLQEEEAKSGH---------------LSREVDALKEKIHEYMATEDLICHL--QGDHSVLQKKLNQQ 753
Cdd:COG5022 1164 nleALPSPPP-FAALSEKRLYQSAlydeksklsssevndLKNELIALFSKIFSGWPRGDKLKKLisEGWVPTEYSTSLKG 1242
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 754 ENRNRDLGREIENLTKelERYRHFSKSLRPSLNGRRISDTqVFSKEVQTEAVDNEPPDYKSLIPLERAVINGQLYEESED 833
Cdd:COG5022 1243 FNNLNKKFDTPASMSN--EKLLSLLNSIDNLLSSYKLEEE-VLPATINSLLQYINVGLFNALRTKASSLRWKSATEVNYN 1319
|
....
gi 1622909575 834 QDED 837
Cdd:COG5022 1320 SEEL 1323
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
141-598 |
7.57e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.87 E-value: 7.57e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 141 NELDKVVEKHKESYRRILGQLLVVEKSHR----------QTILELEEEKRKHKEYMEKSDEFICLLEQECERLKKLIDQE 210
Cdd:COG1196 277 EELELELEEAQAEEYELLAELARLEQDIArleerrreleERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEA 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 211 IKSQEEKEQEKEKRVTTLKEELTKLKSFAlmvvDEQQRLTAQLTLQRQKIQELTTNAKETHTKLALAEARVQEEEQKATR 290
Cdd:COG1196 357 EAELAEAEEALLEAEAELAEAEEELEELA----EELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAE 432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 291 LEKELQTQTTKFHQDQHTIMAKLTNEDSQNRQLQQKLAALSRQIDELEETNRSLRKAEEELQDIKE------------KI 358
Cdd:COG1196 433 LEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEaeadyegflegvKA 512
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 359 SKGEYGNAGIMAEVEELRK-------------------RVLDMEGKDEELIKMEEQCRD-------LNKRLEKETLQSKD 412
Cdd:COG1196 513 ALLLAGLRGLAGAVAVLIGveaayeaaleaalaaalqnIVVEDDEVAAAAIEYLKAAKAgratflpLDKIRARAALAAAL 592
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 413 FKLEVEKLSKRIMALEKLEDAFNKSKQEcYSLKCNLEKER--MTTKQLSQELESLKGRIKELEAIESRLEKTEFTLKEDL 490
Cdd:COG1196 593 ARGAIGAAVDLVASDLREADARYYVLGD-TLLGRTLVAARleAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELL 671
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 491 TKLKTLTVMFVDERKTMSEKLKKTEDKLQAASSQLQVEQNKVTTVTEKLIEETKRALKSKTDVEEKMYSVTKERDDLKNK 570
Cdd:COG1196 672 AALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEE 751
|
490 500 510
....*....|....*....|....*....|.
gi 1622909575 571 LKAEEEKG---NDLLSRVNMLKNRLQSLEAI 598
Cdd:COG1196 752 ALEELPEPpdlEELERELERLEREIEALGPV 782
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
142-440 |
8.04e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 8.04e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 142 ELDKVVEKHKESYRRILGQLLVVEKSHRQTILELEEEKRKHKEYMEKSDEficlLEQECERLKKLIDQEIKsqeekeqek 221
Cdd:TIGR02168 737 RLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEE----LEAQIEQLKEELKALRE--------- 803
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 222 ekRVTTLKEELTKLKSFALMVVDEQQRLTAQLTLQRQKIQELTTNAKETHTKLALAEARVQEEEQKATRLEKELQT---Q 298
Cdd:TIGR02168 804 --ALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAllnE 881
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 299 TTKFHQDQHTIMAKLTNEDSQNRQLQQKLAALSRQIDELEETNRSLR----KAEEELQDIKEKISKGEYGNAGIM----- 369
Cdd:TIGR02168 882 RASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLElrleGLEVRIDNLQERLSEEYSLTLEEAealen 961
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 370 ---AEVEELRKRVLDMEGKDEEL--IKME--EQCRDLNKRLEKETLQSKDFKLEVEKLSKRI-----MALEKLEDAFNKS 437
Cdd:TIGR02168 962 kieDDEEEARRRLKRLENKIKELgpVNLAaiEEYEELKERYDFLTAQKEDLTEAKETLEEAIeeidrEARERFKDTFDQV 1041
|
...
gi 1622909575 438 KQE 440
Cdd:TIGR02168 1042 NEN 1044
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
228-433 |
9.97e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.54 E-value: 9.97e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 228 LKEELTKLKSFALMVVDEQQRLTAQLTLQRQKIQELTTNAKETHTKLALAEARVQEEEQKATRLEKELQTQTTKF----- 302
Cdd:COG4942 32 LQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELaellr 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 303 ----HQDQHTIMAKLTNEDSQ------------NRQLQQKLAALSRQIDELEETNRSLRKAEEELQDIKekiskgeygna 366
Cdd:COG4942 112 alyrLGRQPPLALLLSPEDFLdavrrlqylkylAPARREQAEELRADLAELAALRAELEAERAELEALL----------- 180
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622909575 367 gimAEVEELRKRVLDMEGKDEELIKmeeqcrDLNKRLEKETLQSKDFKLEVEKLSKRIMALEKLEDA 433
Cdd:COG4942 181 ---AELEEERAALEALKAERQKLLA------RLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
251-773 |
1.03e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 56.52 E-value: 1.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 251 AQLTLQRQKIQELTTNAKETHTKLALAEARVQEEEQKATRLEKELQTQTTKFHQDQHTIMAKLTNEDSQNRQLQQKLAAL 330
Cdd:TIGR00618 166 KELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 331 SRQIDELEETNRSLRKAEEELQDIKEKISKgeygnagiMAEVEELRKRvLDMEGKDEELIKMEEQCRDLNKRLEK--ETL 408
Cdd:TIGR00618 246 TQKREAQEEQLKKQQLLKQLRARIEELRAQ--------EAVLEETQER-INRARKAAPLAAHIKAVTQIEQQAQRihTEL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 409 QSKDFKLEVE-----KLSKRIMALEKLEDAFNKSKQECYSLKCNLEKERMTTKQLSQELEsLKGRIKELEAIESRLEKTE 483
Cdd:TIGR00618 317 QSKMRSRAKLlmkraAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHT-LTQHIHTLQQQKTTLTQKL 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 484 FTLKEDLTKLKTL--TVMFVDERKtmseklKKTEDKLQAASSQLQVEQnKVTTVTEKLIEETKRALKSKTDVEEKMYSVT 561
Cdd:TIGR00618 396 QSLCKELDILQREqaTIDTRTSAF------RDLQGQLAHAKKQQELQQ-RYAELCAAAITCTAQCEKLEKIHLQESAQSL 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 562 KERD----DLKNKLKAEEEKGNDLLSRVNMLKNRLQSLEaiekdfpknklnqdsgKSTTALHQENNKIKELSQEVERLKL 637
Cdd:TIGR00618 469 KEREqqlqTKEQIHLQETRKKAVVLARLLELQEEPCPLC----------------GSCIHPNPARQDIDNPGPLTRRMQR 532
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 638 KLKDMKAIEDDLMKTEDEYETLERRYANERDKAQFLSKELEHVKMELTKYKLAEKTETSHEQWLFKRLQEEEAKSGHLSR 717
Cdd:TIGR00618 533 GEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLAC 612
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 1622909575 718 EVDALKEKIHEYMATEDLICHLQGDHSVLQKKLNQqenrnrdLGREIENLTKELER 773
Cdd:TIGR00618 613 EQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTA-------LHALQLTLTQERVR 661
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
245-787 |
1.57e-07 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 55.52 E-value: 1.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 245 EQQRLTAQLT-LQRQKIQ----------ELTTNAKETHTKLALAEARVQEEEQKATRLEKELQTQTTKFHQDQHTIMAKL 313
Cdd:pfam05557 3 ELIESKARLSqLQNEKKQmelehkrariELEKKASALKRQLDRESDRNQELQKRIRLLEKREAEAEEALREQAELNRLKK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 314 TNEDSQNRQLQQKLAALSRQIDELEETNRSLRKAEEELQDIKEKISKGEYGNAGIMAEVEELRKRVLDMEGKDEELIKME 393
Cdd:pfam05557 83 KYLEALNKKLNEKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQLRQNLEKQQ 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 394 EQCRDLNKR---LEKETLQSKDFKLEVEKLSKRIMALEKLEDAFNKSKQECYSLKCNLEKERMttkqLSQELESLKGRIK 470
Cdd:pfam05557 163 SSLAEAEQRikeLEFEIQSQEQDSEIVKNSKSELARIPELEKELERLREHNKHLNENIENKLL----LKEEVEDLKRKLE 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 471 ELEAIESRLEKTEFTLKEDLTKLKTLTVMFVDERKTMseklkKTEDKLQAASSQLQveQNKVTTVTEK--LIEETKRALK 548
Cdd:pfam05557 239 REEKYREEAATLELEKEKLEQELQSWVKLAQDTGLNL-----RSPEDLSRRIEQLQ--QREIVLKEENssLTSSARQLEK 311
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 549 SKTDVEEKMYSVTKERDDLKNKLKAEEEKGNDLLSRVNMLKNRLQSLEAIEKDFPKNKLNQDSGKsttalhQENNKIKEL 628
Cdd:pfam05557 312 ARRELEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKERDGYRAILESYDKELTMSNYSP------QLLERIEEA 385
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 629 SQEVERLKLKLKDMKAieddlmktedEYETLERRYANERDKAQFLSKELEhvkmeltkyklaektetsheqwlFKRLQEE 708
Cdd:pfam05557 386 EDMTQKMQAHNEEMEA----------QLSVAEEELGGYKQQAQTLERELQ-----------------------ALRQQES 432
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 709 EAKSGHLSREVDALKEKIHEYMAT-----------EDLICH--LQGD-----HSVLQKKLNQQENRNRDLGREIENLTKE 770
Cdd:pfam05557 433 LADPSYSKEEVDSLRRKLETLELErqrlreqknelEMELERrcLQGDydpkkTKVLHLSMNPAAEAYQQRKNQLEKLQAE 512
|
570
....*....|....*..
gi 1622909575 771 LERYRHFSKSLRPSLNG 787
Cdd:pfam05557 513 IERLKRLLKKLEDDLEQ 529
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
175-490 |
1.64e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 55.80 E-value: 1.64e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 175 LEEEKRKHKEYMEKSDEFICLLE---QECERLKKLIDQEIKSQEEKEQEKEKRVTTLKEELTKLKSfalmvvdEQQRLTA 251
Cdd:TIGR04523 375 LKKENQSYKQEIKNLESQINDLEskiQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNS-------EIKDLTN 447
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 252 QLTLQRQKIQELTTNAKETHTKLALAEARVQEEEQKATRLEKELQTQTTKFhqdqhtimAKLTNedsQNRQLQQKLAALS 331
Cdd:TIGR04523 448 QDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKEL--------KKLNE---EKKELEEKVKDLT 516
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 332 RQIDELEETNRSL----RKAEEELQDIKEKISKGEYG--NAGIMAEVEELRKRVLDMEGKDEELIKMEEQCRDLNKRLEK 405
Cdd:TIGR04523 517 KKISSLKEKIEKLesekKEKESKISDLEDELNKDDFElkKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEK 596
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 406 EtlqskdFKLEVEKLSKRIMALEKLEDAFNKSKQECYSLKCNLEKERMTTKQLSQELESLKGRIKELEAIESRLEKTEFT 485
Cdd:TIGR04523 597 E------KKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKE 670
|
....*
gi 1622909575 486 LKEDL 490
Cdd:TIGR04523 671 SKTKI 675
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
428-789 |
1.95e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.46 E-value: 1.95e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 428 EKLEDAFNKSKQecysLKCNLEKERMTTKQLSQELESLKG-RIKELEAIESRLEKTEFTLKEDLTKLKTLtvmfVDERKT 506
Cdd:TIGR02169 170 RKKEKALEELEE----VEENIERLDLIIDEKRQQLERLRReREKAERYQALLKEKREYEGYELLKEKEAL----ERQKEA 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 507 MSEKLKKTEDKLQAASSQLQvEQNKVTTVTEKLIEETKRALKSKTD-----VEEKMYSVTKERDDLKNKLKAEEEKGNDL 581
Cdd:TIGR02169 242 IERQLASLEEELEKLTEEIS-ELEKRLEEIEQLLEELNKKIKDLGEeeqlrVKEKIGELEAEIASLERSIAEKERELEDA 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 582 LSRVNMLKNRLQSLEAiekdfpknklnqdsgksttalhqennKIKELSQEVERLKLKLKDMKAI----EDDLMKTEDEYE 657
Cdd:TIGR02169 321 EERLAKLEAEIDKLLA--------------------------EIEELEREIEEERKRRDKLTEEyaelKEELEDLRAELE 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 658 TLERRYANERDKAQFLSKELEHVKMEL-----TKYKLAEKTETSHEQWLFKRLQEEEAKSGHLSREvDALKEKIHEYMAT 732
Cdd:TIGR02169 375 EVDKEFAETRDELKDYREKLEKLKREInelkrELDRLQEELQRLSEELADLNAAIAGIEAKINELE-EEKEDKALEIKKQ 453
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 1622909575 733 EDLICHLQGDHSVLQKKLNQQENRNRDLGREIENLTKELERYRHFSKSLRPSLNGRR 789
Cdd:TIGR02169 454 EWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGR 510
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
257-482 |
4.16e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.54 E-value: 4.16e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 257 RQKIQELTTnakethtKLALAEARVQEEEQKATRLEKELQTQTTKfhQDQHTIMAKLTNEDSQNRQLQQKLAALSRQIDE 336
Cdd:COG4913 609 RAKLAALEA-------ELAELEEELAEAEERLEALEAELDALQER--REALQRLAEYSWDEIDVASAEREIAELEAELER 679
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 337 LEETNRSLRKAEEELQDIKEKISKGEygnagimaevEELRKRVLDMEGKDEELIKMEEQCRDLNKRLEketlqskdfklE 416
Cdd:COG4913 680 LDASSDDLAALEEQLEELEAELEELE----------EELDELKGEIGRLEKELEQAEEELDELQDRLE-----------A 738
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622909575 417 VEKLSKRIMALEkLEDAFNKSKQEcyslkcnlEKERMTTKQLSQELESLKGRIKELeaiESRLEKT 482
Cdd:COG4913 739 AEDLARLELRAL-LEERFAAALGD--------AVERELRENLEERIDALRARLNRA---EEELERA 792
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
242-792 |
4.61e-07 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 54.14 E-value: 4.61e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 242 VVDEQQRLTAQLTLQRQKIQELTTNAKETHTKLALAEARVQEEEQKATRLEKELQTQTTKFHQDQHTIMAKLTNEDSQNR 321
Cdd:PRK01156 174 VIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNR 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 322 qLQQKLAALSRQIDELEETNRSLRKAEEELQDIkekISKGEYGNAGIMAEVEELRKRVLD----MEGKDEELIKMEEQCR 397
Cdd:PRK01156 254 -YESEIKTAESDLSMELEKNNYYKELEERHMKI---INDPVYKNRNYINDYFKYKNDIENkkqiLSNIDAEINKYHAIIK 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 398 DLNKrLEKETLQSKDFKLEVEKLSKRIMALEKLEDAFNKSKQECYSLKCNLEKERMTTKQLSQEL-ESLKGRIKELEAIE 476
Cdd:PRK01156 330 KLSV-LQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFIsEILKIQEIDPDAIK 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 477 SRLEKTEFTLKEDLTKLKTLTVmfvdERKTMSEKLKKTEDKLQAASSQlqveqNKVTTVTEKLIEETKRALKSktDVEEK 556
Cdd:PRK01156 409 KELNEINVKLQDISSKVSSLNQ----RIRALRENLDELSRNMEMLNGQ-----SVCPVCGTTLGEEKSNHIIN--HYNEK 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 557 MYSVTKERDDLKNKLKAEEEKGNDLLSRVNMLK-----------NRLQSLEAIEKDFpKNKLNQDSGKSTTAlHQENNKI 625
Cdd:PRK01156 478 KSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLEseeinksineyNKIESARADLEDI-KIKINELKDKHDKY-EEIKNRY 555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 626 KELSQEVERLKLK--LKDMKAIED-DLMKTEDEYETLERRYANERDKAQFLSKELEHVKMELTKYKLAEKTETSHEQWLF 702
Cdd:PRK01156 556 KSLKLEDLDSKRTswLNALAVISLiDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKY 635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 703 KRLQEeeaksghLSREVDALKEKIHEYMATEDLICHLQGDHSVLQKKLNQQENRNRDLGREIENLTKELERYRHFSKSLR 782
Cdd:PRK01156 636 NEIQE-------NKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILR 708
|
570
....*....|..
gi 1622909575 783 PSLN--GRRISD 792
Cdd:PRK01156 709 TRINelSDRIND 720
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
274-546 |
4.70e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.61 E-value: 4.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 274 LALAEARVQEEEQKAtrLEKELQtqttKFHQDQHTIMAKLTNEDSQNRQLQQKLAALSRQIDELEetnRSLRKAEEELQD 353
Cdd:COG4942 10 LLALAAAAQADAAAE--AEAELE----QLQQEIAELEKELAALKKEEKALLKQLAALERRIAALA---RRIRALEQELAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 354 IKEKISKGEygnagimAEVEELRKRVLDMEGKDEELIKmeEQCRDLNKRLEKETLQSKDFklevEKLSKRIMALEKLEDA 433
Cdd:COG4942 81 LEAELAELE-------KEIAELRAELEAQKEELAELLR--ALYRLGRQPPLALLLSPEDF----LDAVRRLQYLKYLAPA 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 434 fnkskqecyslkcnlEKERMttKQLSQELESLKGRIKELEAIESRLEKTEFTLKEDLTKLKTLtvmfVDERKTMSEKLKK 513
Cdd:COG4942 148 ---------------RREQA--EELRADLAELAALRAELEAERAELEALLAELEEERAALEAL----KAERQKLLARLEK 206
|
250 260 270
....*....|....*....|....*....|...
gi 1622909575 514 TEDKLQAASSQLQVEQNKVTTVTEKLIEETKRA 546
Cdd:COG4942 207 ELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
197-781 |
7.01e-07 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 53.64 E-value: 7.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 197 EQECERLKKLIDQEIKSQEEKEQEKEKR----VTTLKEELTKLKSFALMVVDEQQRLTAQLTLQRQKIQELTTNAKETHT 272
Cdd:pfam01576 326 EQEVTELKKALEEETRSHEAQLQEMRQKhtqaLEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEH 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 273 KLALAEARVQE--------EEQKATRLEK----------------ELQTQTTKFHQDQHTIMAKLtnEDSQ---NRQLQQ 325
Cdd:pfam01576 406 KRKKLEGQLQElqarlsesERQRAELAEKlsklqselesvssllnEAEGKNIKLSKDVSSLESQL--QDTQellQEETRQ 483
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 326 KLAaLSRQIDELEETNRSLRKAEEELQDIKEKISKgeygnagimaEVEELRKRVLDMEGKDEELIKMEEQCRDLNKRLEK 405
Cdd:pfam01576 484 KLN-LSTRLRQLEDERNSLQEQLEEEEEAKRNVER----------QLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQR 552
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 406 EtLQSKDFKLEveklsKRIMALEKLEDAFNKSKQECYSLKCNLEKERMTTKQLSQELESLKGRIKELEAIESRL----EK 481
Cdd:pfam01576 553 E-LEALTQQLE-----EKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLEKKQKKFDQMLAEEKAISARYaeerDR 626
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 482 TEFTLKEDLTKLKTLTVMfVDERKTMSEKLKKTEDKLQAASSQLQVEQNKVTTVTEKLiEETKRALksktdvEEKMYSVT 561
Cdd:pfam01576 627 AEAEAREKETRALSLARA-LEEALEAKEELERTNKQLRAEMEDLVSSKDDVGKNVHEL-ERSKRAL------EQQVEEMK 698
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 562 KERDDLKNKLKAEEEKgnDLLSRVNMLKNRLQ---SLEAIEK--DFPKNKLNQDSGKSTTALHQENNKIKELSQEVERLK 636
Cdd:pfam01576 699 TQLEELEDELQATEDA--KLRLEVNMQALKAQferDLQARDEqgEEKRRQLVKQVRELEAELEDERKQRAQAVAAKKKLE 776
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 637 LKLKDMKAIEDDLMKTEDE-YETLERRYANERDkaqfLSKELEHVKME----LTKYKLAEKTETSHEQWLFkRLQEEEAK 711
Cdd:pfam01576 777 LDLKELEAQIDAANKGREEaVKQLKKLQAQMKD----LQRELEEARASrdeiLAQSKESEKKLKNLEAELL-QLQEDLAA 851
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 712 SGHLSREVDALKEKIHEYMAT---------------EDLICHLQGDHSVLQKKLNQQENRNRDLGREIENLTKELERYRH 776
Cdd:pfam01576 852 SERARRQAQQERDELADEIASgasgksalqdekrrlEARIAQLEEELEEEQSNTELLNDRLRKSTLQVEQLTTELAAERS 931
|
....*
gi 1622909575 777 FSKSL 781
Cdd:pfam01576 932 TSQKS 936
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
282-772 |
7.07e-07 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 53.64 E-value: 7.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 282 QEEEQKATRLE-KELQTQTTKFHQDQHTIMAKLTNEDSQNRQLQQKLAALSRQIDELEETNRSL--RKAEEE--LQDIKE 356
Cdd:pfam01576 3 QEEEMQAKEEElQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMRARLaaRKQELEeiLHELES 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 357 KISKGEYGNAGIMAEVEELRKRVLDMEGKDEElikmEEQCRDlNKRLEKETLQSKdfkleVEKLSKRIMALEKLEDAFNK 436
Cdd:pfam01576 83 RLEEEEERSQQLQNEKKKMQQHIQDLEEQLDE----EEAARQ-KLQLEKVTTEAK-----IKKLEEDILLLEDQNSKLSK 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 437 SK----QECYSLKCNLEKERMTTKQLSQ-------ELESLKGRIKELEAIESRLEKTEFTLKEDLTKLKTLTVMFVDERK 505
Cdd:pfam01576 153 ERklleERISEFTSNLAEEEEKAKSLSKlknkheaMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIA 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 506 TMSEKLKKTEDKLQAASSQLQVEQNKVTTVTEKLIEETKRALKSKTDVE-EKMY--SVTKERDDLKNKLKAEEEKGNDLL 582
Cdd:pfam01576 233 ELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLEsERAArnKAEKQRRDLGEELEALKTELEDTL 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 583 srvnmlknrlqsleaiekdfpknklnqdsgkSTTALHQENNKIKElsQEVERLKlklkdmKAIEDDLMKTEDEYETLERR 662
Cdd:pfam01576 313 -------------------------------DTTAAQQELRSKRE--QEVTELK------KALEEETRSHEAQLQEMRQK 353
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 663 YANERDKAQFLSKELEHVKMELTKYKLAEKTETSHEQWLFKRLQEEEAKSGHLSREVDA-LKEkiheymatedlichLQG 741
Cdd:pfam01576 354 HTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGqLQE--------------LQA 419
|
490 500 510
....*....|....*....|....*....|.
gi 1622909575 742 DHSVLQKKLNQQENRNRDLGREIENLTKELE 772
Cdd:pfam01576 420 RLSESERQRAELAEKLSKLQSELESVSSLLN 450
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
293-781 |
1.01e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 53.10 E-value: 1.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 293 KELQTQTTKFHQDQHTIMAKLTNEdsqNRQLQQKLAALSRQIDELEETNRSLRKAEEELQDIKEKISKGEYGNAGIMAEV 372
Cdd:TIGR04523 71 NNSNNKIKILEQQIKDLNDKLKKN---KDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEI 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 373 EELRKRVLDMEGKDEELIKMEEQCRDLNKRLEKETLqskDFKLEVEKLSKRIMALEKLEDAFNKSKQECYSLKCNLEKER 452
Cdd:TIGR04523 148 KKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKL---NIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELK 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 453 MTTKQLSQELESLKGRIKELEAIESRLEKTEFTLKEDLTKLKTLTVMFVDERKTMSEKLKKTEDKLQAASSQLQV-EQNK 531
Cdd:TIGR04523 225 KQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDlNNQK 304
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 532 VTTVTEKLIEETKRALKSKTDVEEKMYSVTKERDDLKNKL----KAEEEKGNDLLSRVNMLKNRLQSLEAIEKD------ 601
Cdd:TIGR04523 305 EQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQIsqlkKELTNSESENSEKQRELEEKQNEIEKLKKEnqsykq 384
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 602 ------FPKNKLNQDSGKSTTALHQENNKIK-------ELSQEVERLKLKLKDMKAIEDDLMKT----EDEYETLERRYA 664
Cdd:TIGR04523 385 eiknleSQINDLESKIQNQEKLNQQKDEQIKklqqekeLLEKEIERLKETIIKNNSEIKDLTNQdsvkELIIKNLDNTRE 464
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 665 NERDKAQFLSKELEHVKMELTKYKLAEKTETSHEQWLFKRLQEEEAKSGHLSREVDALKEKIHEYmatEDLICHLQGDHS 744
Cdd:TIGR04523 465 SLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKL---ESEKKEKESKIS 541
|
490 500 510
....*....|....*....|....*....|....*....
gi 1622909575 745 VLQKKLNQ--QENRNRDLGREIENLTKELERYRHFSKSL 781
Cdd:TIGR04523 542 DLEDELNKddFELKKENLEKEIDEKNKEIEELKQTQKSL 580
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
174-723 |
1.73e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 52.74 E-value: 1.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 174 ELEEEKRKHKEyMEKSDEFICLLEQECERLKKLIDQEIKSQEEKEQEKEKRVTTLKEELTKLKSFALMVVDEQ------- 246
Cdd:TIGR00606 246 ELDPLKNRLKE-IEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKerelvdc 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 247 QRLTAQLTLQRQKIQELTTNAKETHTKLALAEARVQEEEQKATRLEKELQT---------------QTTKFHQDQHTIMA 311
Cdd:TIGR00606 325 QRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATrleldgfergpfserQIKNFHTLVIERQE 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 312 KLTNEDSQN-RQLQQKLAALSRQIDELEETNRS-----------LRKAEEELQDIKEKISKGEYGNAGIMAEVEELRKRV 379
Cdd:TIGR00606 405 DEAKTAAQLcADLQSKERLKQEQADEIRDEKKGlgrtielkkeiLEKKQEELKFVIKELQQLEGSSDRILELDQELRKAE 484
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 380 LDM---------EGKDEELIKMEEQCRDLNKRLEKETLQSKDFKLEVEKLSKRIMALEKLEDAF-----NKSKQECY--- 442
Cdd:TIGR00606 485 RELskaeknsltETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDeqirkIKSRHSDElts 564
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 443 ---------SLKCNLEKERMTTKQLSQELESLKGRIKELEAIESRLEKTEFTLKEDLTKL--KTLTVMFVDERKTMSEKL 511
Cdd:TIGR00606 565 llgyfpnkkQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYedKLFDVCGSQDEESDLERL 644
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 512 KKTEDKLQAASSQLQVEQNKVTTVTEKLIEETK-------RALKSK-------TDVEEKMYSVTKERDDLKNKLKAEEEK 577
Cdd:TIGR00606 645 KEEIEKSSKQRAMLAGATAVYSQFITQLTDENQsccpvcqRVFQTEaelqefiSDLQSKLRLAPDKLKSTESELKKKEKR 724
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 578 GNDLLSRVNMLKNRLQsleAIEKDFPK-----NKLNQDSGKSTTALHQENNKIKELSQEVERLKLKLKDMKAIEDDLMKT 652
Cdd:TIGR00606 725 RDEMLGLAPGRQSIID---LKEKEIPElrnklQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMEL 801
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1622909575 653 EDeyetLERRYANERDKAQF--LSKELEHVKMELTKYKLAEKTETSHEQWLFKRLQEEEAKSGHLSREVDALK 723
Cdd:TIGR00606 802 KD----VERKIAQQAAKLQGsdLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELK 870
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
356-683 |
2.29e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 51.94 E-value: 2.29e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 356 EKISKGEYGNAGIMAEVEELR-----KRVLDMEGKDEELI----KMEEQCRDLNKRLE-KETLQSKDFKLEVE----KLS 421
Cdd:COG3206 71 SGLSSLSASDSPLETQIEILKsrpvlERVVDKLNLDEDPLgeeaSREAAIERLRKNLTvEPVKGSNVIEISYTspdpELA 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 422 KRImaLEKLEDAFNKskqecYSLKCNLEKERMTTKQLSQELESLKgriKELEAIESRLEktEFTLKEDLTKLKtltvmfv 501
Cdd:COG3206 151 AAV--ANALAEAYLE-----QNLELRREEARKALEFLEEQLPELR---KELEEAEAALE--EFRQKNGLVDLS------- 211
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 502 DERKTMSEKLKKTEDKLQAASSQLQVEQNKVTTVTEKLieETKRALKSKTDVEEKMYSVTKERDDLKNKLKAEEEKGNDL 581
Cdd:COG3206 212 EEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQL--GSGPDALPELLQSPVIQQLRAQLAELEAELAELSARYTPN 289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 582 LSRVNMLKNRLQSLEAiekdfpknKLNQDSGKSTTALHQEnnkIKELSQEVERLKLKLKDMKAIEDDLMKTEDEYETLER 661
Cdd:COG3206 290 HPDVIALRAQIAALRA--------QLQQEAQRILASLEAE---LEALQAREASLQAQLAQLEARLAELPELEAELRRLER 358
|
330 340
....*....|....*....|..
gi 1622909575 662 RYANERDKAQFLSKELEHVKME 683
Cdd:COG3206 359 EVEVARELYESLLQRLEEARLA 380
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
280-711 |
2.69e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 51.97 E-value: 2.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 280 RVQEEEQKATRLEKELQTQTTKFHQDQHTIMAKLTNEDSQNRQLQQKL----AALSRQIDELEETNRSLRKAEEELQDIK 355
Cdd:TIGR00606 685 RVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLApgrqSIIDLKEKEIPELRNKLQKVNRDIQRLK 764
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 356 EKISKGEYGNAGIMAEvEELRKRVLDMEGKDEELikmEEQCRDLNKRLEKET--LQSKDFKLEVEKLSKRImalEKLEDA 433
Cdd:TIGR00606 765 NDIEEQETLLGTIMPE-EESAKVCLTDVTIMERF---QMELKDVERKIAQQAakLQGSDLDRTVQQVNQEK---QEKQHE 837
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 434 FNKSKQECYSLKCNLEKERMTTKQLSQELESLKGRIKELEAIESRLEKTEFTLKEDLTKLKTLTVMFVDERKTMSeKLKK 513
Cdd:TIGR00606 838 LDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDS-PLET 916
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 514 TEDKLQAASSQLQVEQNKVTTVTEKLIEETKRALKSKTDVEEKMYSVTKE-RDDLKNKLKAEEEKGNDLLSRVNMLKNRL 592
Cdd:TIGR00606 917 FLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDgKDDYLKQKETELNTVNAQLEECEKHQEKI 996
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 593 -QSLEAIEKDFPKNKLNQDSGKSTTALHQENNKIKELSQEVERLKLKLKDMKAIE--DDLMKTEDEYETLERRYANERDK 669
Cdd:TIGR00606 997 nEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQmkQEHQKLEENIDLIKRNHVLALGR 1076
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 1622909575 670 AQFLSKELEHVKMELTKYKLAEKTETSHEQWLFKRLQEEEAK 711
Cdd:TIGR00606 1077 QKGYEKEIKHFKKELREPQFRDAEEKYREMMIVMRTTELVNK 1118
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
312-531 |
2.84e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 50.98 E-value: 2.84e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 312 KLTNEDSQNRQLQQKLAALSRQID----ELEETNRSLRKAEEELQDIKEKISKGEygnagimAEVEELRKRVldmegkDE 387
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDalqaELEELNEEYNELQAELEALQAEIDKLQ-------AEIAEAEAEI------EE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 388 ELIKMEEQCRDLNKRLEKET-----LQSKDFklevEKLSKRIMALEKLEDAFNKSKQECYSLKCNLEKERmttKQLSQEL 462
Cdd:COG3883 84 RREELGERARALYRSGGSVSyldvlLGSESF----SDFLDRLSALSKIADADADLLEELKADKAELEAKK---AELEAKL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622909575 463 ESLKGRIKELEAIESRLEKTEFTLKEDLTKLKTLTVMFVDERKTMSEKLKKTEDKLQAASSQLQVEQNK 531
Cdd:COG3883 157 AELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAA 225
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
224-652 |
4.04e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 51.17 E-value: 4.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 224 RVTTLKEELTKLKSFALMVVDEQQRLTAQLTLQRQKIQELTTNAKETHTKLALAEARVQEEEQK---ATRLEKELQTQTT 300
Cdd:TIGR04523 336 IISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKiqnQEKLNQQKDEQIK 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 301 KFHQDQHTIMAKLTNEDSQNRQLQQKLAALSRQIDELEETNRSLRKAEEELQdIKEKISKGEYGNagimaEVEELRKRVL 380
Cdd:TIGR04523 416 KLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLE-TQLKVLSRSINK-----IKQNLEQKQK 489
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 381 DMEGKDEELIKMEEQCRDLNKRLEKETLQSKDFKLEVEKLSKRImalEKLEDAFNKSKQECYSLKCNLEKErmttkQLSQ 460
Cdd:TIGR04523 490 ELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEK---KEKESKISDLEDELNKDDFELKKE-----NLEK 561
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 461 ELESLKGRIKELEAIESRLEKTEFTLKEDLTKLKtltvmfvDERKTMSEKLKKTEDKLqaasSQLQVEQNKVTTVTEKLI 540
Cdd:TIGR04523 562 EIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKE-------KEKKDLIKEIEEKEKKI----SSLEKELEKAKKENEKLS 630
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 541 EETKRALKSKTDVEEKMYSVTKERDDLKNKLKAEEEKGNDLLSRVN----MLKNRLQSLEAIEKDFPKNKLNqdsgkstt 616
Cdd:TIGR04523 631 SIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKIDdiieLMKDWLKELSLHYKKYITRMIR-------- 702
|
410 420 430
....*....|....*....|....*....|....*.
gi 1622909575 617 alHQENNKIKELSQEVERLKLKLKDMKAIEDDLMKT 652
Cdd:TIGR04523 703 --IKDLPKLEEKYKEIEKELKKLDEFSKELENIIKN 736
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
344-493 |
4.22e-06 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 50.93 E-value: 4.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 344 LRKAEEELQDIKEKISKgeygnagimaEVEELRKRVLdMEGKDEELIKMEEQCRDLNKRLEKETLQSKDFKLEVEKLSKR 423
Cdd:PRK12704 33 IKEAEEEAKRILEEAKK----------EAEAIKKEAL-LEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRK 101
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622909575 424 IMALEKLEDAFNKSKQECYSLKCNLEK-----ERMTTKQLsQELESLKGRIKElEAIESRLEKTEFTLKEDLTKL 493
Cdd:PRK12704 102 LELLEKREEELEKKEKELEQKQQELEKkeeelEELIEEQL-QELERISGLTAE-EAKEILLEKVEEEARHEAAVL 174
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
242-884 |
5.66e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 50.82 E-value: 5.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 242 VVDEQQRLTAQLTLQRQKIQELTTNAKETHTKLALAEARVQEEEQKATRLE----------KELQTQTTKFHQDQHTIMA 311
Cdd:TIGR00606 194 VRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYEneldplknrlKEIEHNLSKIMKLDNEIKA 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 312 KLTNE---DSQNRQLQQKLA----ALSRQIDELEETN-RSLRKAEEELQDIKEKISKGEYGNAGIMAEVEELRKRV---- 379
Cdd:TIGR00606 274 LKSRKkqmEKDNSELELKMEkvfqGTDEQLNDLYHNHqRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQgrlq 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 380 LDMEGKDEELIKMEEQCRDLNKRLEKETLQSKDFkLEVEKLSKRIMALEKLEDAFNKSKQECYSLKcnlEKERMTTKQLS 459
Cdd:TIGR00606 354 LQADRHQEHIRARDSLIQSLATRLELDGFERGPF-SERQIKNFHTLVIERQEDEAKTAAQLCADLQ---SKERLKQEQAD 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 460 QELESLKGRIKELEAIESRLEKTEFTLKEDLTKLKTLTVMfVDERKTMSEKLKKTEDKLQAASSQLQVEQNKVTTVTEKL 539
Cdd:TIGR00606 430 EIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGS-SDRILELDQELRKAERELSKAEKNSLTETLKKEVKSLQN 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 540 ----IEETKRALKSK-------TDVEEKMYSVTKERDDLKNKLKAEEEKGNDLLSRV-------NMLKNRLQSLEAIEKD 601
Cdd:TIGR00606 509 ekadLDRKLRKLDQEmeqlnhhTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLlgyfpnkKQLEDWLHSKSKEINQ 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 602 FPKN--KLNQDSGKSTTALHQENNKIKELSQEVERLKLKLKDM---KAIEDDLMKTEDEYETLERRYANERDKAQFLSKE 676
Cdd:TIGR00606 589 TRDRlaKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVcgsQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQF 668
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 677 LEHVKME------LTKYKLAEKTETsheQWLFKRLQEEEAKSGHLSREVDALKEKIHEymATEDLICHLQGDHSVLQ--- 747
Cdd:TIGR00606 669 ITQLTDEnqsccpVCQRVFQTEAEL---QEFISDLQSKLRLAPDKLKSTESELKKKEK--RRDEMLGLAPGRQSIIDlke 743
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 748 KKLNQQENRNRDLGREIENLTKELERYRHFSKSLRPSLNGRRISDTQVFSKEVQTEAVDNEPPDYKSLIPLERAVINGQL 827
Cdd:TIGR00606 744 KEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRT 823
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*..
gi 1622909575 828 YEESEDQDEDPNDEGSVLSFKCSQSTPCPVNRKLWIPWMKSKEGHPQNGKIQTKPNA 884
Cdd:TIGR00606 824 VQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNL 880
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
273-512 |
6.43e-06 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 50.40 E-value: 6.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 273 KLALAEARVQEEEQKATRLEKELQTQTTKFHQDQHTIMAKLTNEDSQNRQLQ-QKLAALSRQID-ELEETNRSLRKAEEE 350
Cdd:PHA02562 170 KLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKyDELVEEAKTIKaEIEELTDELLNLVMD 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 351 LQDIKEKISKGEYGNAGIMAEVEELRKrVLDMEGKDEELIKMEEQCRDLNKRLEKETLQSKDFKLEVEKLSKRIMALEKL 430
Cdd:PHA02562 250 IEDPSAALNKLNTAAAKIKSKIEQFQK-VIKMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEI 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 431 EDAFNKSKQECYSLKCNLEKERMTTKQLSQELESLKGRIKELEAiESRLEKTEF-TLKEDLTKL---KTLTVMFVDERKT 506
Cdd:PHA02562 329 MDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQA-EFVDNAEELaKLQDELDKIvktKSELVKEKYHRGI 407
|
....*.
gi 1622909575 507 MSEKLK 512
Cdd:PHA02562 408 VTDLLK 413
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
142-709 |
8.20e-06 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 50.29 E-value: 8.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 142 ELDKVVEKHKESYRRILGQLLVVEK-------------SHRQTILELEEEKRKHKEYMEKSDEFICLLEQEcERLKKLID 208
Cdd:PRK01156 139 EMDSLISGDPAQRKKILDEILEINSlernydklkdvidMLRAEISNIDYLEEKLKSSNLELENIKKQIADD-EKSHSITL 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 209 QEIKSQEEKEQEKEKRVTTLKEELTKLKSFAlmvvDEQQRLTAQL-TLQRQKIQELTTNAK-----ETHTKLALAEARVQ 282
Cdd:PRK01156 218 KEIERLSIEYNNAMDDYNNLKSALNELSSLE----DMKNRYESEIkTAESDLSMELEKNNYykeleERHMKIINDPVYKN 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 283 EEE-----------QKATRLEKELQTQTTKFHqDQHTIMAKLTNEDSQNRQLQQKLAALSRQIDELEETNRSLRKAEEEL 351
Cdd:PRK01156 294 RNYindyfkykndiENKKQILSNIDAEINKYH-AIIKKLSVLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSI 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 352 QDIKEKIskgeygnagimaevEELRKRVLDMEGKDEELIKMEEQCRD-LNKRLEKETLQSKDFKLEVEKLSKRIMALEKL 430
Cdd:PRK01156 373 ESLKKKI--------------EEYSKNIERMSAFISEILKIQEIDPDaIKKELNEINVKLQDISSKVSSLNQRIRALREN 438
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 431 EDAFNKS------KQECYSLKCNL--EKERMTTKQLSQELESLKGRIKELEAIESRLEKTEFTLKEDLTKLKTLTVmfvd 502
Cdd:PRK01156 439 LDELSRNmemlngQSVCPVCGTTLgeEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESEEI---- 514
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 503 erktmsEKLKKTEDKLQAASSQLQVEQNKVTTVTEKLI--EETKRALKSK--TDVEEKMYSVTKERDDLKN-KLKAEEEK 577
Cdd:PRK01156 515 ------NKSINEYNKIESARADLEDIKIKINELKDKHDkyEEIKNRYKSLklEDLDSKRTSWLNALAVISLiDIETNRSR 588
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 578 GNDLLSRVNMLKNRLQSleaIEKDFPKNKLNQDS--GKSTTALHQENNKIKELSQ---EVERLKLKLKDMKAIEDDLMKT 652
Cdd:PRK01156 589 SNEIKKQLNDLESRLQE---IEIGFPDDKSYIDKsiREIENEANNLNNKYNEIQEnkiLIEKLRGKIDNYKKQIAEIDSI 665
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*..
gi 1622909575 653 EDEYETLERRYANERDKAQFLSKELEHVKMELTKYKLAEKTETSHEQWLFKRLQEEE 709
Cdd:PRK01156 666 IPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDIN 722
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
310-662 |
8.36e-06 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 49.85 E-value: 8.36e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 310 MAKLTNEDSQNRQLQQKLAALSRQIDELEETNRSLRKAEEELQDIKEKISK------GEYGNAgimaeVEELRKRVLDME 383
Cdd:pfam06160 85 KKALDEIEELLDDIEEDIKQILEELDELLESEEKNREEVEELKDKYRELRKtllanrFSYGPA-----IDELEKQLAEIE 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 384 GK----------------DEELIKMEEQCRDLNKRLEketlqskDFKLEVEKLSKRI-MALEKLEDAFNKSKQECYSLK- 445
Cdd:pfam06160 160 EEfsqfeeltesgdyleaREVLEKLEEETDALEELME-------DIPPLYEELKTELpDQLEELKEGYREMEEEGYALEh 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 446 CNLEKERmttKQLSQELESLKGRIKELEaiesrLEKTEFTLKEDLTKLKTLTVMF---VDERKTMSEKLKKTEDKLQAAS 522
Cdd:pfam06160 233 LNVDKEI---QQLEEQLEENLALLENLE-----LDEAEEALEEIEERIDQLYDLLekeVDAKKYVEKNLPEIEDYLEHAE 304
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 523 SQLQVEQNKVTTVTEKLI---EETKRALKSKTDVE--EKMYSVTKERDD--------LKNKLKAEEEKGNDLLSRVNMLK 589
Cdd:pfam06160 305 EQNKELKEELERVQQSYTlneNELERVRGLEKQLEelEKRYDEIVERLEekevayseLQEELEEILEQLEEIEEEQEEFK 384
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 590 NRLQSLEAIEKDfPKNKLNQ-DSGKSTTALHQEN------------------NKIKELSQEVERLKLklkDMKAIEDDLM 650
Cdd:pfam06160 385 ESLQSLRKDELE-AREKLDEfKLELREIKRLVEKsnlpglpesyldyffdvsDEIEDLADELNEVPL---NMDEVNRLLD 460
|
410
....*....|..
gi 1622909575 651 KTEDEYETLERR 662
Cdd:pfam06160 461 EAQDDVDTLYEK 472
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
188-661 |
8.37e-06 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 50.46 E-value: 8.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 188 KSDEFICLLEQECERLKKLIDQEIKSQEEKEQEKEKRVTTLKEELTK----LKSFALMVVDEQQRLTAQ-LTLQRQKIQE 262
Cdd:COG5022 807 GSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRslkaKKRFSLLKKETIYLQSAQrVELAERQLQE 886
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 263 LTTNAKEThTKLALaearVQEE-EQKATRLEKELQTQTTK--FHQDQHTIMAKLTNEDSQNRQLQQKLAALSRQIDELEE 339
Cdd:COG5022 887 LKIDVKSI-SSLKL----VNLElESEIIELKKSLSSDLIEnlEFKTELIARLKKLLNNIDLEEGPSIEYVKLPELNKLHE 961
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 340 TNRSLRKAEEELQDIKEKISKgeygnagimaEVEELRKRVLDMEGKDEELIKMeeqcRDLNKRLEKETLQSKDFKLEVEK 419
Cdd:COG5022 962 VESKLKETSEEYEDLLKKSTI----------LVREGNKANSELKNFKKELAEL----SKQYGALQESTKQLKELPVEVAE 1027
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 420 LsKRIMALEKLEDAFNKSKQECYSLKCNLEKERMttkQLSQELESLKGRIKELEAIESRLEKTEFTlkedLTKLKTLTVM 499
Cdd:COG5022 1028 L-QSASKIISSESTELSILKPLQKLKGLLLLENN---QLQARYKALKLRRENSLLDDKQLYQLEST----ENLLKTINVK 1099
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 500 FVDERKTMSEKLKKTEDKLQAASSQLQVEQN-------KVTTV-----TEKLIEETKRALKSKTDVEEKMYSV----TKE 563
Cdd:COG5022 1100 DLEVTNRNLVKPANVLQFIVAQMIKLNLLQEiskflsqLVNTLepvfqKLSVLQLELDGLFWEANLEALPSPPpfaaLSE 1179
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 564 RDDLKNKLKAEEEKGNDllSRVNMLKNRLQSLEAIEK-DFPKNKLNQDSGKSTTALHQENNKIKELSQEVERLKLK---- 638
Cdd:COG5022 1180 KRLYQSALYDEKSKLSS--SEVNDLKNELIALFSKIFsGWPRGDKLKKLISEGWVPTEYSTSLKGFNNLNKKFDTPasms 1257
|
490 500
....*....|....*....|....*..
gi 1622909575 639 ----LKDMKAIEDDLMKTEDEYETLER 661
Cdd:COG5022 1258 neklLSLLNSIDNLLSSYKLEEEVLPA 1284
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
155-353 |
8.64e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.30 E-value: 8.64e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 155 RRILGQLlvveKSHRQTILELEEEKRKHKEYMEKSD-----EFICLLEQECERLkkliDQEIKSQEEKEQEKEKRVTTLK 229
Cdd:COG4913 251 IELLEPI----RELAERYAAARERLAELEYLRAALRlwfaqRRLELLEAELEEL----RAELARLEAELERLEARLDALR 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 230 EELTKLKSfALMVVDEQQ--RLTAQLTLQRQKIQELTTNAKETHTKLALAEARVQEEEQKATRLEKELQTQTTKFHQDQH 307
Cdd:COG4913 323 EELDELEA-QIRGNGGDRleQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELE 401
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1622909575 308 TIMAKLTNEDSQNRQLQQKLAALSRQIDELEETNRSLRKAEEELQD 353
Cdd:COG4913 402 ALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRD 447
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
160-743 |
2.25e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 48.81 E-value: 2.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 160 QLLVVEKSHRQTILELEEEKRKHKEYMEKSDEFICLLEQECERLKKLIDQEIKSQEEKEQEKEKR---------VTTLKE 230
Cdd:TIGR00618 314 TELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTqhihtlqqqKTTLTQ 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 231 ELTKLKSFALMVVDEQQRLTAQLTLQR---QKIQELTTNAKETHTKLALAEARVQEEEQKATRLEKELQTQTTKFHQDQH 307
Cdd:TIGR00618 394 KLQSLCKELDILQREQATIDTRTSAFRdlqGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQ 473
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 308 TIMAKLTNEDSQNRQLQQKLAALSRQIDELEETNRSLRKAEEELQDIKE------KISKGEYGNAGIMAEVEELRKRVLD 381
Cdd:TIGR00618 474 QLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNpgpltrRMQRGEQTYAQLETSEEDVYHQLTS 553
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 382 MEgkdEELIKMEEQCRDLNKRLEKETLQSKDFKLEVEKLSKRIMALEKLEDAFNKSKQEcYSLKCNLEKERMTTKQLSQE 461
Cdd:TIGR00618 554 ER---KQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDM-LACEQHALLRKLQPEQDLQD 629
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 462 LESLKGRI-KELEAIESRLEKTEFTLKEDLTKLKTLTVMFVDERKTMSEKLKktEDKLQAASSQLQVEQNKVTTVTEKLI 540
Cdd:TIGR00618 630 VRLHLQQCsQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLA--LQKMQSEKEQLTYWKEMLAQCQTLLR 707
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 541 EETKRALKSKTDVEEkmysVTKERDDLKNKLKAEEEKGNDLLSRVNML-KNRLQSLEAI-EKDFPKNKLNQDSGKSTTAL 618
Cdd:TIGR00618 708 ELETHIEEYDREFNE----IENASSSLGSDLAAREDALNQSLKELMHQaRTVLKARTEAhFNNNEEVTAALQTGAELSHL 783
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 619 HQE-NNKIKELSQEVERLKLKLKDMKA-IEDDLMKTEDEYETLERRYANERDKAQFLSKELEHVKMELTKYKLAEKTETS 696
Cdd:TIGR00618 784 AAEiQFFNRLREEDTHLLKTLEAEIGQeIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQ 863
|
570 580 590 600
....*....|....*....|....*....|....*....|....*....
gi 1622909575 697 HEQWLFKRLQEEEAKSGHLSREVDALKEKIHEYMA--TEDLICHLQGDH 743
Cdd:TIGR00618 864 LTQEQAKIIQLSDKLNGINQIKIQFDGDALIKFLHeiTLYANVRLANQS 912
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
623-775 |
2.64e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 48.61 E-value: 2.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 623 NKIKELSQEVERLKLKLKDMKAIEDDLMKTEDEYETLERRYANERDKAQFLSKELEHVKMELTKYKLAEKTETSHEQWlf 702
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERL-- 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 703 KRLQEEEAKSGHLSREVDALKEKIHEY------------MATEDLICHLQGDHSVLQKKLNQQENRNRDLGREIENLTKE 770
Cdd:COG4717 149 EELEERLEELRELEEELEELEAELAELqeeleelleqlsLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEE 228
|
....*
gi 1622909575 771 LERYR 775
Cdd:COG4717 229 LEQLE 233
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
247-409 |
2.69e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 46.84 E-value: 2.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 247 QRLTAQLTLQRQKIQELTTNAKETHTKLALAEARVQEEEQKATRLEKELQTQTTKFHQDQHTIMAKLTNEDSQNrqLQQK 326
Cdd:COG1579 20 DRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEYEA--LQKE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 327 LAALSRQIDELEEtnrSLRKAEEELQDIKEKISKGEYGNAGIMAEVEELRKRV-LDMEGKDEELIKMEEQCRDLNKRLEK 405
Cdd:COG1579 98 IESLKRRISDLED---EILELMERIEELEEELAELEAELAELEAELEEKKAELdEELAELEAELEELEAEREELAAKIPP 174
|
....
gi 1622909575 406 ETLQ 409
Cdd:COG1579 175 ELLA 178
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
154-776 |
3.29e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 48.50 E-value: 3.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 154 YRRILGQLLVVEKSHRQTILELEEEKRKHKEYMEKSDEFICLL---------EQECERLKKLIDQEIKSQEEKEQEKEKR 224
Cdd:TIGR00606 184 YIKALETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQItskeaqlesSREIVKSYENELDPLKNRLKEIEHNLSK 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 225 VTTLKEELTKLKSFALmvvdEQQRLTAQLTLQRQK--------IQELTTNAKETHTKLALAEARVQEEEQKATRLEKELQ 296
Cdd:TIGR00606 264 IMKLDNEIKALKSRKK----QMEKDNSELELKMEKvfqgtdeqLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLN 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 297 TQTTKF--HQDQHTIMAKLTNEDSQNRQLQQKLAALSRQIDELEETNRSLRKAEEELQDIKEKISKGEYGNAGIMAEVEE 374
Cdd:TIGR00606 340 QEKTELlvEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQS 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 375 lrKRVLDMEGKDEELIKMEEQCRDL---NKRLEKETLQSKDFKLEVEKLSKRIMALEKLEDAFNKSKQECYSLKCNleke 451
Cdd:TIGR00606 420 --KERLKQEQADEIRDEKKGLGRTIelkKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKN---- 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 452 rmttkqlsQELESLKGRIKELEAIESRLEKTEFTLKEDLTKL------KTLTVMFVDERKTMSEKLKKTEDK-LQAASSQ 524
Cdd:TIGR00606 494 --------SLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLnhhtttRTQMEMLTKDKMDKDEQIRKIKSRhSDELTSL 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 525 LQVEQNKvttvteKLIEETKRAL-KSKTDVEEKMYSVTKE---RDDLKNKLKAEEEKGNDLLSRVNMLKNRLQSLEAIEK 600
Cdd:TIGR00606 566 LGYFPNK------KQLEDWLHSKsKEINQTRDRLAKLNKElasLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEES 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 601 DFpkNKLNQDSGKSTTALHQENNKIKELSQEVERLKLKLKDMKAIEDDLMKTEDEYET----LERRYANERDKAQFLSKE 676
Cdd:TIGR00606 640 DL--ERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEfisdLQSKLRLAPDKLKSTESE 717
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 677 LEHVKMELTKYKLAEKTETSHEQWLFKRLQEEEAKSGHLSREVDALKEKIHE-------YMATEDLICHLQGDHSVLQ-- 747
Cdd:TIGR00606 718 LKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEqetllgtIMPEEESAKVCLTDVTIMErf 797
|
650 660 670
....*....|....*....|....*....|....*....
gi 1622909575 748 --------KKLNQQ--ENRNRDLGREIENLTKELERYRH 776
Cdd:TIGR00606 798 qmelkdveRKIAQQaaKLQGSDLDRTVQQVNQEKQEKQH 836
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
284-434 |
3.44e-05 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 47.93 E-value: 3.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 284 EEQKATRLEKELQT-QTTKFHQDqhtimAKLTNEDSQNRQLQQKLAALSRQIDELEETNRSLRKAEEELQDIKEKISKGE 362
Cdd:COG2433 383 EELIEKELPEEEPEaEREKEHEE-----RELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEARSEE 457
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622909575 363 YGNAGIMAEVEELRKRVLDMEGkdeELIKMEEQCRDLNKRLEK-ETLQSKDFK------LEVEKLSKRimALEKLEDAF 434
Cdd:COG2433 458 RREIRKDREISRLDREIERLER---ELEEERERIEELKRKLERlKELWKLEHSgelvpvKVVEKFTKE--AIRRLEEEY 531
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
377-782 |
4.63e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 48.04 E-value: 4.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 377 KRVLDMEGKDEELIKMEEQCRdlnKRLEKETLQSKDFKLEVEklskrimALEKLEDAFNKSKQECYSLKCNLEKERMTTK 456
Cdd:pfam02463 135 YNFLVQGGKIEIIAMMKPERR---LEIEEEAAGSRLKRKKKE-------ALKKLIEETENLAELIIDLEELKLQELKLKE 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 457 QLSQELESLKGRIKELEAIESRLEKTEFTLKEDLTKLKTLTVMFVDERKTMSEKLKKTEDKLQAASSQLQVEQNKVTTVT 536
Cdd:pfam02463 205 QAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQ 284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 537 EKLIEETKRALKSKtdvEEKMYSVTKERDDLKNKLKAEEEKGNDLLSRVNMLKNRLQSLEAIEKDFPKNKLNQDSGKSTT 616
Cdd:pfam02463 285 EEELKLLAKEEEEL---KSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEEL 361
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 617 ALHQENNKIKElsqevERLKLKLKDMKAIEDDLMKTEDEYETLERRYANERDKAQFLSKELEHVKMELTKYKLAEKTETS 696
Cdd:pfam02463 362 EKLQEKLEQLE-----EELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEE 436
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 697 HEQWLFKR--------LQEEEAKSGHLSREVDALKEKIHEYMATEDLICHLQGDHSVLQKKLNQQENRNRDLGREIENLT 768
Cdd:pfam02463 437 ESIELKQGklteekeeLEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALI 516
|
410
....*....|....
gi 1622909575 769 KELERYRHFSKSLR 782
Cdd:pfam02463 517 KDGVGGRIISAHGR 530
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
280-600 |
4.67e-05 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 47.59 E-value: 4.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 280 RVQEEEQKATRLEKELQTQTTKFHQDQHTIMAKLTNEDSQNRQLQQKLAALSRQIDELEETNRSLRKAEE---------- 349
Cdd:PRK01156 378 KIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEmlngqsvcpv 457
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 350 ---ELQDIKEKISKGEYGN--AGIMAEVEELRKRVLDMEGKDEELIKMEE--QCRDLNkRLEKETLQSKDFKLEVEKLSK 422
Cdd:PRK01156 458 cgtTLGEEKSNHIINHYNEkkSRLEEKIREIEIEVKDIDEKIVDLKKRKEylESEEIN-KSINEYNKIESARADLEDIKI 536
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 423 RIMALEKLEDAFNKSKQECYSLKCNLEKERMTT--KQLSQ----ELESLKGRI----KELEAIESRLEKTEFTLKEDLTK 492
Cdd:PRK01156 537 KINELKDKHDKYEEIKNRYKSLKLEDLDSKRTSwlNALAVisliDIETNRSRSneikKQLNDLESRLQEIEIGFPDDKSY 616
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 493 LKTLTVMFVDE------RKTMSEKLKKTEDKLQAASSQLQVEQNKVTTVTEKLIEETKRALKSKTD---VEEKMYSVTKE 563
Cdd:PRK01156 617 IDKSIREIENEannlnnKYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNlkkSRKALDDAKAN 696
|
330 340 350
....*....|....*....|....*....|....*..
gi 1622909575 564 RDDLKNKLKAEEEKGNDLLSRVNMLKNRLQSLEAIEK 600
Cdd:PRK01156 697 RARLESTIEILRTRINELSDRINDINETLESMKKIKK 733
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
224-472 |
5.56e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 47.64 E-value: 5.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 224 RVTTLKEELTKLKSfalMVVDEQQRLTAQLT--LQRQ-------KIQELTTNAKETHTKLA--LAEARVQEEEQKATRLE 292
Cdd:PRK04863 384 RAEAAEEEVDELKS---QLADYQQALDVQQTraIQYQqavqaleRAKQLCGLPDLTADNAEdwLEEFQAKEQEATEELLS 460
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 293 KELQTQTTKFHQDQHTIMAKL--------TNEDSQN------------RQLQQKLAALSRQIDELEETNRSLRKAEEELQ 352
Cdd:PRK04863 461 LEQKLSVAQAAHSQFEQAYQLvrkiagevSRSEAWDvarellrrlreqRHLAEQLQQLRMRLSELEQRLRQQQRAERLLA 540
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 353 DIKEKISKGeYGNAgimAEVEELRkrvldmEGKDEELIKMEEQCRDLNKRLEKETLQSKDFKLEVEKLSKRIM------- 425
Cdd:PRK04863 541 EFCKRLGKN-LDDE---DELEQLQ------EELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPawlaaqd 610
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 1622909575 426 ALEKLEDAFN---KSKQECYSLKCN-LEKERMTTK---QLSQELESLKGRIKEL 472
Cdd:PRK04863 611 ALARLREQSGeefEDSQDVTEYMQQlLERERELTVerdELAARKQALDEEIERL 664
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
383-641 |
5.57e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 5.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 383 EGKDEELIKMEEQCRDLNKRLEKetlqskdFKLEVEKLSKRIMALEKLEDAFN-----KSKQECYSlkcNLEKERMTTKQ 457
Cdd:COG4913 613 AALEAELAELEEELAEAEERLEA-------LEAELDALQERREALQRLAEYSWdeidvASAEREIA---ELEAELERLDA 682
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 458 LSQELESLKGRIKELEAIESRLEKTEFTLKEDLTKLKtltvmfvDERKTMSEKLKKTEDKLQAASSQLQVEQnkvttvtE 537
Cdd:COG4913 683 SSDDLAALEEQLEELEAELEELEEELDELKGEIGRLE-------KELEQAEEELDELQDRLEAAEDLARLEL-------R 748
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 538 KLIEETKRALKSKTDVEEKMYSVTKERDDLKNKLKAEEEKGNDLLSRVN------------------MLKNRLQSLEAI- 598
Cdd:COG4913 749 ALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNrewpaetadldadleslpEYLALLDRLEEDg 828
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 1622909575 599 ----EKDFpKNKLNQDSGKSTTALHQE-NNKIKELSQEVERLKLKLKD 641
Cdd:COG4913 829 lpeyEERF-KELLNENSIEFVADLLSKlRRAIREIKERIDPLNDSLKR 875
|
|
| PTZ00440 |
PTZ00440 |
reticulocyte binding protein 2-like protein; Provisional |
197-770 |
5.85e-05 |
|
reticulocyte binding protein 2-like protein; Provisional
Pssm-ID: 240419 [Multi-domain] Cd Length: 2722 Bit Score: 47.52 E-value: 5.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 197 EQECERLKKL----IDQEIKSqeekeqekekrvttLKEELTKLKSFALMVVDEQqrltaqLTLQRQKIQELTTNAKETHT 272
Cdd:PTZ00440 672 KNEYEKLEFMksdnIDNIIKN--------------LKKELQNLLSLKENIIKKQ------LNNIEQDISNSLNQYTIKYN 731
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 273 KLALAEARVQEEEQKATRLEKELQTQTTKF-----HQDQHTIMAKLTNED--SQNRQLQQKLAALSRQIDELEEtnrSLR 345
Cdd:PTZ00440 732 DLKSSIEEYKEEEEKLEVYKHQIINRKNEFilhlyENDKDLPDGKNTYEEflQYKDTILNKENKISNDINILKE---NKK 808
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 346 KAEEELQDIKEKISKGEYGNAGIMAEVEELRKRvLDMEGKDEELIKMEEQCRDLNKRLEkETLQskdfklEVEKLSKRIM 425
Cdd:PTZ00440 809 NNQDLLNSYNILIQKLEAHTEKNDEELKQLLQK-FPTEDENLNLKELEKEFNENNQIVD-NIIK------DIENMNKNIN 880
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 426 ALEKLEDAFNKSKQECYSLKCNLEKERMTTKQLSQ--------------ELESLKGRI-KELEAIESRLEKTEFT----- 485
Cdd:PTZ00440 881 IIKTLNIAINRSNSNKQLVEHLLNNKIDLKNKLEQhmkiintdniiqknEKLNLLNNLnKEKEKIEKQLSDTKINnlkmq 960
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 486 LKEDLTKLKTLTVMFVDERKTMSEKLKKTED-------KLQAASSQLQVEQNKVTTVT----EKLIEETKRALKSK-TDV 553
Cdd:PTZ00440 961 IEKTLEYYDKSKENINGNDGTHLEKLDKEKDewehfksEIDKLNVNYNILNKKIDDLIkkqhDDIIELIDKLIKEKgKEI 1040
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 554 EEKMYSVTKERDDLKNKLKAEEEKGNDLLSRVNMLKNRLQSLEAiekdfpknklnqdsgKSTTALhqenNKIKELSQEVE 633
Cdd:PTZ00440 1041 EEKVDQYISLLEKMKTKLSSFHFNIDIKKYKNPKIKEEIKLLEE---------------KVEALL----KKIDENKNKLI 1101
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 634 RLKLKLKDMKAIEDDLM-KTEDEYET----LERRYANERDkaqfLSKELEHVKMELTKYKLAEKTETSHEQWLF----KR 704
Cdd:PTZ00440 1102 EIKNKSHEHVVNADKEKnKQTEHYNKkkksLEKIYKQMEK----TLKELENMNLEDITLNEVNEIEIEYERILIdhivEQ 1177
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622909575 705 LQEEEAKSGHLSREVDALKEKIHEYMAteDLICHLQGDHSVLqkKLNQQENRNRDLGREIENLTKE 770
Cdd:PTZ00440 1178 INNEAKKSKTIMEEIESYKKDIDQVKK--NMSKERNDHLTTF--EYNAYYDKATASYENIEELTTE 1239
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
329-785 |
6.92e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 47.35 E-value: 6.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 329 ALSRQIDELEETNRSLrKAEEELQDIKEKISKGEYGNAGIMAEVEELRKRVLDMEGKDEELIKMEEQCRDLNKRLEKETL 408
Cdd:TIGR00606 170 ALKQKFDEIFSATRYI-KALETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELD 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 409 QSKDFKLEVEKLSKRIMALEKLEDAFNKSKQECYSLKCNLEKERMTTKQLSQEleslkgrikELEAIESRLEKTEFTLKE 488
Cdd:TIGR00606 249 PLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDE---------QLNDLYHNHQRTVREKER 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 489 DLTKLKTLTVMFVDERKTMSEklKKTEDKLQAASSQLQVEQNKVTTVTEKLiEETKRALKSKTDVEEKMYSVTKErddLK 568
Cdd:TIGR00606 320 ELVDCQRELEKLNKERRLLNQ--EKTELLVEQGRLQLQADRHQEHIRARDS-LIQSLATRLELDGFERGPFSERQ---IK 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 569 NKLKAEEEKGNDLLSRVNMLKNRLQSLEAIEKDFPKNKLNQDSGKSTT------ALHQENNKIKELSQEVERLKLKLKDM 642
Cdd:TIGR00606 394 NFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTielkkeILEKKQEELKFVIKELQQLEGSSDRI 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 643 KAIEDDLMKTEDEYETLERRYANERDKAQFLSKELEHVKMELTKYKLAEKTE------TSHEQWLF---KRLQEEEAKSG 713
Cdd:TIGR00606 474 LELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEqlnhhtTTRTQMEMltkDKMDKDEQIRK 553
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1622909575 714 HLSREVDALKEKIHEYMATEDLICHLQGdhsvLQKKLNQQENRNRDLGREIENLTKELERYRHFSKSLRPSL 785
Cdd:TIGR00606 554 IKSRHSDELTSLLGYFPNKKQLEDWLHS----KSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQL 621
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
348-773 |
7.47e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.07 E-value: 7.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 348 EEELQDIKEKISKGEYGNAGI-MAEVEELRKRVLDMEGKDEELIKMEEQCRDLNKRLEketlqskDFKLEVEKLSKRIMA 426
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELnLKELKELEEELKEAEEKEEEYAELQEELEELEEELE-------ELEAELEELREELEK 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 427 LEKLEDAFnkskqecyslkcnlekermttkQLSQELESLKgriKELEAIESRLEKteftLKEDLTKLKTLtvmfVDERKT 506
Cdd:COG4717 121 LEKLLQLL----------------------PLYQELEALE---AELAELPERLEE----LEERLEELREL----EEELEE 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 507 MSEKLKKTEDKLQAASSQLQVEQ----NKVTTVTEKLIEETKRALKSKTDVEEKMYSVTKERDDLKNKLKAEEEK----- 577
Cdd:COG4717 168 LEAELAELQEELEELLEQLSLATeeelQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEerlke 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 578 -----------------GNDLLSRVNMLKNRLQSLEAI------EKDFPKNKLNQDSGKSTTALHQENNKIKELSQEVER 634
Cdd:COG4717 248 arlllliaaallallglGGSLLSLILTIAGVLFLVLGLlallflLLAREKASLGKEAEELQALPALEELEEEELEELLAA 327
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 635 LKLKLKDMKAIEDDLMKTEDEYETLERRYANERDKAQFlsKELEHVKMELTKYKLAEkTETSHEQWL--FKRLQEEEAKS 712
Cdd:COG4717 328 LGLPPDLSPEELLELLDRIEELQELLREAEELEEELQL--EELEQEIAALLAEAGVE-DEEELRAALeqAEEYQELKEEL 404
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622909575 713 GHLSREVDALKEKIHEYMATEDLIcHLQGDHSVLQKKLNQQENRNRDLGREIENLTKELER 773
Cdd:COG4717 405 EELEEQLEELLGELEELLEALDEE-ELEEELEELEEELEELEEELEELREELAELEAELEQ 464
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
140-343 |
1.11e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.91 E-value: 1.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 140 MNELDKVVEKHKESYRRILGQLLVVEK---SHRQTILELEEEKRKHKEYMEKSDEFICLLEQECERLKKLIDQEIKSQEE 216
Cdd:COG4942 36 IAELEKELAALKKEEKALLKQLAALERriaALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRALYR 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 217 KEQEKEKRVTTLKEELTKL-KSFALM--VVDEQQRLTAQLTLQRQKIQELTTNAKETHTKLALAEARVQEEEQKATRLEK 293
Cdd:COG4942 116 LGRQPPLALLLSPEDFLDAvRRLQYLkyLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKA 195
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1622909575 294 ELQTQTTKFHQDQHTIMAKLTNEDSQNRQLQQKLAALSRQIDELEETNRS 343
Cdd:COG4942 196 ERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
132-360 |
1.14e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 46.16 E-value: 1.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 132 QEDIYEKPMNELDKVVEKHKESYRRILGQLLVVEKSHRQTILELEEEKRKHKEYMEKSDEFICLLEQECERLKKLIDQei 211
Cdd:PHA02562 196 QIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQ-- 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 212 ksqeekeqekekrvttlkeeLTKLKSFaLMVVDEQQRLTAQLTLQRQKIQELTTNAKETHTKLALAEARVQEEEQKatrl 291
Cdd:PHA02562 274 --------------------FQKVIKM-YEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEI---- 328
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1622909575 292 EKELQTQTTKFHQDQHTIMAK---LTNEDSQNRQLQqklAALSRQIDELEETNRSLRKAEEELQDIKEKISK 360
Cdd:PHA02562 329 MDEFNEQSKKLLELKNKISTNkqsLITLVDKAKKVK---AAIEELQAEFVDNAEELAKLQDELDKIVKTKSE 397
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
256-427 |
1.17e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 46.31 E-value: 1.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 256 QRQKIQELTTNAKETHTKLALAEARvQEEEQKATRLEKE-------LQTQTTKFHQDQHTIMAKLTNEDSQNRQLQQKLA 328
Cdd:PRK12704 39 EAKRILEEAKKEAEAIKKEALLEAK-EEIHKLRNEFEKElrerrneLQKLEKRLLQKEENLDRKLELLEKREEELEKKEK 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 329 ALSRQIDELEETNRSLRKAEEELQDIKEKISkgeygnaGIMAevEELRKRVLDmegkdeeliKMEEQCRD----LNKRLE 404
Cdd:PRK12704 118 ELEQKQQELEKKEEELEELIEEQLQELERIS-------GLTA--EEAKEILLE---------KVEEEARHeaavLIKEIE 179
|
170 180
....*....|....*....|...
gi 1622909575 405 KETlqskdfKLEVEKLSKRIMAL 427
Cdd:PRK12704 180 EEA------KEEADKKAKEILAQ 196
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
224-358 |
1.22e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.16 E-value: 1.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 224 RVTTLKEELTKLKSFALMVVDEQQRLTAQLTLQRQKIQELTTNA--KETHTKLALAEARVQEEEQKAT-------RLEKE 294
Cdd:COG3206 220 QLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPviQQLRAQLAELEAELAELSARYTpnhpdviALRAQ 299
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1622909575 295 LQTQTTKFHQDQHTIMAKLtneDSQNRQLQQKLAALSRQIDELEETNRSLRKAEEELQDIKEKI 358
Cdd:COG3206 300 IAALRAQLQQEAQRILASL---EAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREV 360
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
350-550 |
1.28e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 44.92 E-value: 1.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 350 ELQDIKEKISKgeygnagIMAEVEELRKRVLDMEgkdEELIKMEEQCRDLNKRLEKETLQSKDFKLEVEKLSKRIMALEK 429
Cdd:COG1579 11 DLQELDSELDR-------LEHRLKELPAELAELE---DELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 430 LEDAFNKSKQecYslkcnlekermttKQLSQELESLKGRIKELEAIESRLEKTEFTLKEDLTKLKtltvmfvDERKTMSE 509
Cdd:COG1579 81 QLGNVRNNKE--Y-------------EALQKEIESLKRRISDLEDEILELMERIEELEEELAELE-------AELAELEA 138
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1622909575 510 KLKKTEDKLQAASSQLQVEQNKVTTVTEKLIEETKRALKSK 550
Cdd:COG1579 139 ELEEKKAELDEELAELEAELEELEAEREELAAKIPPELLAL 179
|
|
| PRK06975 |
PRK06975 |
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed |
246-352 |
1.53e-04 |
|
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Pssm-ID: 235899 [Multi-domain] Cd Length: 656 Bit Score: 45.86 E-value: 1.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 246 QQRL--TAQLTLQRQkiqelttNAKETHTklalAEARVQEEEqkatrlekeLQTQTTKFHQDQHTIMAKLTNEDSQNRQL 323
Cdd:PRK06975 345 NRKVdrLDQELVQRQ-------QANDAQT----AELRVKTEQ---------AQASVHQLDSQFAQLDGKLADAQSAQQAL 404
|
90 100 110
....*....|....*....|....*....|.
gi 1622909575 324 QQKLAALSRQID--ELEETNRSLRKAEEELQ 352
Cdd:PRK06975 405 EQQYQDLSRNRDdwMIAEVEQMLSSASQQLQ 435
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
315-537 |
1.67e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.78 E-value: 1.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 315 NEDSQNRQLQQKLAALSRQIDELEEtnrSLRKAEEELQDIKEK---ISKGEYGNAgIMAEVEELRKRVLDMEgkdEELIK 391
Cdd:COG3206 165 NLELRREEARKALEFLEEQLPELRK---ELEEAEAALEEFRQKnglVDLSEEAKL-LLQQLSELESQLAEAR---AELAE 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 392 MEEQCRDLNKRLEKETLQSKDFK--LEVEKLSKRIMALEKLEDAFNKS-----------KQECYSLKCNLEKE-RMTTKQ 457
Cdd:COG3206 238 AEARLAALRAQLGSGPDALPELLqsPVIQQLRAQLAELEAELAELSARytpnhpdvialRAQIAALRAQLQQEaQRILAS 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 458 LSQELESLKGRIKELEAIESRLEKTEFTLKEDLTKLKTLTvmfvDERKTMSEKLKKTEDKLQAASSQLQVEQNKVTTVTE 537
Cdd:COG3206 318 LEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLE----REVEVARELYESLLQRLEEARLAEALTVGNVRVIDP 393
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
310-700 |
1.89e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 46.20 E-value: 1.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 310 MAKLTNEDSQNRQLQQKLAALSRQIDELEETNRSLRKAEEE-LQDIKEKISKGEYGN--AGIMAEVEEL---RKRVLD-- 381
Cdd:TIGR01612 485 IDENSKQDNTVKLILMRMKDFKDIIDFMELYKPDEVPSKNIiGFDIDQNIKAKLYKEieAGLKESYELAknwKKLIHEik 564
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 382 --MEGKDEELIKMEEQCRDL-NKRLE--KETLQSKDFKLEVEklskrimalEKLEDAFNKSK--QECYSLKCNLEKERMT 454
Cdd:TIGR01612 565 keLEEENEDSIHLEKEIKDLfDKYLEidDEIIYINKLKLELK---------EKIKNISDKNEyiKKAIDLKKIIENNNAY 635
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 455 TKQLS-----QELESLKGRIKELEAIESRLEKTeftLKEDLTKLKTLTVMFVDErktmsEKLKKTEDK--LQAASSQLQV 527
Cdd:TIGR01612 636 IDELAkispyQVPEHLKNKDKIYSTIKSELSKI---YEDDIDALYNELSSIVKE-----NAIDNTEDKakLDDLKSKIDK 707
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 528 EQNKVTTVTEKLIE------ETKRALKSKTDVEEKMYSVTKERDDLKNKLKAEEEKGNDLLSRVNMLKNRLQSLEAIekd 601
Cdd:TIGR01612 708 EYDKIQNMETATVElhlsniENKKNELLDIIVEIKKHIHGEINKDLNKILEDFKNKEKELSNKINDYAKEKDELNKY--- 784
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 602 fpKNKLNQDSGKSTTALHQENNKIKELSQEVERLKLKLKDMKAIEDDLMKTEDEYETLerryanerdKAQFLSKELEHVK 681
Cdd:TIGR01612 785 --KSKISEIKNHYNDQINIDNIKDEDAKQNYDKSKEYIKTISIKEDEIFKIINEMKFM---------KDDFLNKVDKFIN 853
|
410
....*....|....*....
gi 1622909575 682 MEltkYKLAEKTETSHEQW 700
Cdd:TIGR01612 854 FE---NNCKEKIDSEHEQF 869
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
132-636 |
2.00e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 45.81 E-value: 2.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 132 QEDIYE---KPMNELDKVvEKHKESYRRILGQLLVVEKSHRQTILELEEEKRKHKEYMEKSdeficlLEQECERLkklid 208
Cdd:TIGR01612 1185 KKNIYDeikKLLNEIAEI-EKDKTSLEEVKGINLSYGKNLGKLFLEKIDEEKKKSEHMIKA------MEAYIEDL----- 1252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 209 QEIKSQEEKEQEKEKRVTTLKEELtklKSFALMVVDEQQRLTAQltlqrQKIQELTTNAKETHTKLALAEARvqeeEQKA 288
Cdd:TIGR01612 1253 DEIKEKSPEIENEMGIEMDIKAEM---ETFNISHDDDKDHHIIS-----KKHDENISDIREKSLKIIEDFSE----ESDI 1320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 289 TRLEKELQT---QTTKFHQDQHTIMAKLTN-----EDSQNRQLQQKLAALSRQIDELEET-NRSLRKAEEELQDIKEKIS 359
Cdd:TIGR01612 1321 NDIKKELQKnllDAQKHNSDINLYLNEIANiynilKLNKIKKIIDEVKEYTKEIEENNKNiKDELDKSEKLIKKIKDDIN 1400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 360 KGEYGNA-----------GIMAEVEELRKRVLDMEGKDEELIKMEEQCRDlNKRLEKETLQSKDFKLE-VEKLSK----- 422
Cdd:TIGR01612 1401 LEECKSKiestlddkdidECIKKIKELKNHILSEESNIDTYFKNADENNE-NVLLLFKNIEMADNKSQhILKIKKdnatn 1479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 423 ----RIMALEKLEDAFNKSKQECYSLKCNLEKERMTTKQLSQELESLKGRIKELEaIESRLEKTEFTLKEDLTKLKTLTV 498
Cdd:TIGR01612 1480 dhdfNINELKEHIDKSKGCKDEADKNAKAIEKNKELFEQYKKDVTELLNKYSALA-IKNKFAKTKKDSEIIIKEIKDAHK 1558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 499 MFVDERKTMSEKLKKTEDKlqaassQLQVE--------QNKVTTVTEKLIEETKRALKSKTDVEEKMYSVTKERDDLKNK 570
Cdd:TIGR01612 1559 KFILEAEKSEQKIKEIKKE------KFRIEddaakndkSNKAAIDIQLSLENFENKFLKISDIKKKINDCLKETESIEKK 1632
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622909575 571 LK-----AEEEKGNDLLSRVNMLKNRLQSLEAIEKDFPKNKlnqdsgkstTALHQENNKIKELSQEVERLK 636
Cdd:TIGR01612 1633 ISsfsidSQDTELKENGDNLNSLQEFLESLKDQKKNIEDKK---------KELDELDSEIEKIEIDVDQHK 1694
|
|
| COG5283 |
COG5283 |
Phage-related tail protein [Mobilome: prophages, transposons]; |
237-403 |
2.32e-04 |
|
Phage-related tail protein [Mobilome: prophages, transposons];
Pssm-ID: 444094 [Multi-domain] Cd Length: 747 Bit Score: 45.62 E-value: 2.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 237 SFALMVVDeqQRLTAQLTLQRQKIQELTTNAKETHTKLALAEARVQEEEQKATRLEKELQTQTTKFHQDQHTIMA---KL 313
Cdd:COG5283 2 QVILGAVD--KPFKSALESAKQRVAALAQALKALEAPTRALARALERAKQAAARLQTKYNKLRQSLQRLRQALDQagiDT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 314 TNEDSQNRQLQQKLAALSRQIDELEETNRSLRKAEEELQDIKEKISK-GEYGNAGI-------------------MAEVe 373
Cdd:COG5283 80 RQLSAAQRRLRSSLEQTNRQLERQQQRLARLGARQDRLKAARARLQRlAGAGAAAAaigaalaasvkpaidfedaMADV- 158
|
170 180 190
....*....|....*....|....*....|
gi 1622909575 374 elrKRVLDMEGKDEELIKMEEQCRDLNKRL 403
Cdd:COG5283 159 ---AATVDLDKSSEQFKALGKQARELSAQT 185
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
138-660 |
2.47e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 45.81 E-value: 2.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 138 KPMNELDKVVEKHKESYRRILGQLLVVEKSHRQTILELEEEKRKHKEYMEKSDEfiCLLEQECERLKKLIDQEIKSQEEK 217
Cdd:TIGR01612 917 KKVDEYIKICENTKESIEKFHNKQNILKEILNKNIDTIKESNLIEKSYKDKFDN--TLIDKINELDKAFKDASLNDYEAK 994
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 218 EQEKEKRVTTLKEELTKLKSFAL-MVVDEQQRLTAQLTlqrQKIQELTTNAKETHTKLALAEARVQEEEQKA-------- 288
Cdd:TIGR01612 995 NNELIKYFNDLKANLGKNKENMLyHQFDEKEKATNDIE---QKIEDANKNIPNIEIAIHTSIYNIIDEIEKEigkniell 1071
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 289 -TRLEKELQTQTTKFHQDQHTImaKLTNEDSQNRQLQQKLAALSRQI-DELEETNRSLRKAEEELQDIKEKisKGEYGNA 366
Cdd:TIGR01612 1072 nKEILEEAEINITNFNEIKEKL--KHYNFDDFGKEENIKYADEINKIkDDIKNLDQKIDHHIKALEEIKKK--SENYIDE 1147
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 367 gIMAEVEELRKrVLDMEGKDEELIKMEEQCRDLNKRLEKEtlqsKDFKLEVEKLSKRIMALEKLEDAFNKSKQECYSLKC 446
Cdd:TIGR01612 1148 -IKAQINDLED-VADKAISNDDPEEIEKKIENIVTKIDKK----KNIYDEIKKLLNEIAEIEKDKTSLEEVKGINLSYGK 1221
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 447 NLEKerMTTKQLSQELESLKGRIKELEAIESRLEKteftLKEDLTKLKTLTVMFVDERKTMsEKLKKTEDKLQAASSQLQ 526
Cdd:TIGR01612 1222 NLGK--LFLEKIDEEKKKSEHMIKAMEAYIEDLDE----IKEKSPEIENEMGIEMDIKAEM-ETFNISHDDDKDHHIISK 1294
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 527 VEQNKVTTVTEKlieetkrALKSKTDVEEKmysvtKERDDLKNKLK---AEEEKGNdllSRVNMLKNRLQSLEAIEKdfp 603
Cdd:TIGR01612 1295 KHDENISDIREK-------SLKIIEDFSEE-----SDINDIKKELQknlLDAQKHN---SDINLYLNEIANIYNILK--- 1356
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*..
gi 1622909575 604 knkLNQdsgksttaLHQENNKIKELSQEVERLKLKLKDMKAIEDDLMKTEDEYETLE 660
Cdd:TIGR01612 1357 ---LNK--------IKKIIDEVKEYTKEIEENNKNIKDELDKSEKLIKKIKDDINLE 1402
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
168-698 |
2.50e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 45.55 E-value: 2.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 168 HRQTILELEEEKRKHkeymEKSdeficllEQECERLKKLIDQEIksqeekeqekekrvTTLKEELTklksfalmvvdEQQ 247
Cdd:pfam01576 185 HEAMISDLEERLKKE----EKG-------RQELEKAKRKLEGES--------------TDLQEQIA-----------ELQ 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 248 RLTAQLTLQRQKIQElttnakethtKLALAEARVQEEEQKATRLEK---ELQTQTTKFHQDQHTIMAKLTNEDSQNRQLQ 324
Cdd:pfam01576 229 AQIAELRAQLAKKEE----------ELQAALARLEEETAQKNNALKkirELEAQISELQEDLESERAARNKAEKQRRDLG 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 325 QKLAALSRQI-DELEETNrslrkAEEELQDIKEkiskgeygnagimAEVEELRKRVldmegkDEELIKMEEQCRDLNKRl 403
Cdd:pfam01576 299 EELEALKTELeDTLDTTA-----AQQELRSKRE-------------QEVTELKKAL------EEETRSHEAQLQEMRQK- 353
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 404 EKETLQSKDFKLEVEKLSKriMALEKLEDAFNKSKQEcyslkcnLEKERMTTKQLSQELE----SLKGRIKELEAIESRL 479
Cdd:pfam01576 354 HTQALEELTEQLEQAKRNK--ANLEKAKQALESENAE-------LQAELRTLQQAKQDSEhkrkKLEGQLQELQARLSES 424
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 480 EKTEFTLKEDLTKLKTltvmfvdERKTMSEKLKKTEDKLQAASSQLQVEQNKVTTVTEKLIEETKRALKSKTdveeKMYS 559
Cdd:pfam01576 425 ERQRAELAEKLSKLQS-------ELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNLST----RLRQ 493
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 560 VTKERDDLKNKLKAEEEKGNDLLSRVNMLKNRLQ-----------SLEAIEKDFPKNK-----LNQDSGKSTTALHQENN 623
Cdd:pfam01576 494 LEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSdmkkkleedagTLEALEEGKKRLQreleaLTQQLEEKAAAYDKLEK 573
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 624 KIKELSQEVERLKLKLKDMKAIEDDLMKTED-------EYETLERRYANERDKAQFLSKELEHVKMELTKyKLAEKTETS 696
Cdd:pfam01576 574 TKNRLQQELDDLLVDLDHQRQLVSNLEKKQKkfdqmlaEEKAISARYAEERDRAEAEAREKETRALSLAR-ALEEALEAK 652
|
..
gi 1622909575 697 HE 698
Cdd:pfam01576 653 EE 654
|
|
| CCCAP |
pfam15964 |
Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in ... |
224-595 |
2.67e-04 |
|
Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in eukaryotes. CCCAP is also known as SDCCAG8, serologically defined colon cancer antigen 8. It is associated with the centrosome.
Pssm-ID: 435040 [Multi-domain] Cd Length: 703 Bit Score: 45.28 E-value: 2.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 224 RVTTLKEEL-TKLKSFALMVVDEQQRLTAQLTLQRQKIQELTTNAKETHTKLALAEARVQEEEQKATRLEKELQTQTTKF 302
Cdd:pfam15964 304 RLTKERDDLmSALVSVRSSLAEAQQRESSAYEQVKQAVQMTEEANFEKTKALIQCEQLKSELERQKERLEKELASQQEKR 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 303 HQDQHTIMAKLTNEDSQNRQ----LQQKLAALSRQIDELEETNRSLRKAEEELQ---------------DIKEKISKGEY 363
Cdd:pfam15964 384 AQEKEALRKEMKKEREELGAtmlaLSQNVAQLEAQVEKVTREKNSLVSQLEEAQkqlasqemdvtkvcgEMRYQLNQTKM 463
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 364 GNAGIMAEVEELRKRVL-DMEGKDEELIKMEEQCRDLNKRLEKETLQSKDFKLEVEKLSKrimALEKLEDAFNKSKQECY 442
Cdd:pfam15964 464 KKDEAEKEHREYRTKTGrQLEIKDQEIEKLGLELSESKQRLEQAQQDAARAREECLKLTE---LLGESEHQLHLTRLEKE 540
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 443 SLKCNLEKE-RMTTKQLSQELESLKGRIKELEAiesRLEKTEFTLKEDLTKLKTLTVMFVDERKTMSEKLKKTEDKLQAA 521
Cdd:pfam15964 541 SIQQSFSNEaKAQALQAQQREQELTQKMQQMEA---QHDKTVNEQYSLLTSQNTFIAKLKEECCTLAKKLEEITQKSRSE 617
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622909575 522 SSQLQVEQNKVTTVTEKLIEETKRaLKSKTDVEEKMYSVTKER-DDLKNKLKAEEEKGNDLLSRVNMLKNRLQSL 595
Cdd:pfam15964 618 VEQLSQEKEYLQDRLEKLQKRNEE-LEEQCVQHGRMHERMKQRlRQLDKHCQATAQQLVQLLSKQNQLFKERQNL 691
|
|
| HOOK |
pfam05622 |
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from ... |
322-801 |
2.68e-04 |
|
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organizms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas this central coiled-coil motif mediates homodimerization and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localized to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. This entry includes the central coiled-coiled domain and the divergent C-terminal domain.
Pssm-ID: 461694 [Multi-domain] Cd Length: 528 Bit Score: 45.07 E-value: 2.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 322 QLQQKLAALSRQIDELEETNRSLRKAEEELQDIKEKISKGEYGNAGIMAEVEELRKRVldmEGKDEELIKMeEQCRDlnk 401
Cdd:pfam05622 11 ELAQRCHELDQQVSLLQEEKNSLQQENKKLQERLDQLESGDDSGTPGGKKYLLLQKQL---EQLQEENFRL-ETARD--- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 402 rleketlqskDFKLEVEKLSKRIMALEKLEDAFNKSKQECYSLKCNLEKERMT---TKQLSQELESLKGRIKELEaiesr 478
Cdd:pfam05622 84 ----------DYRIKCEELEKEVLELQHRNEELTSLAEEAQALKDEMDILRESsdkVKKLEATVETYKKKLEDLG----- 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 479 lektefTLKEDLTKLKTLTVMFVDERKTMSEKLKKTedklQAASSQLQVEQNKVTTVTEKLIEETKRALKSKTD---VEE 555
Cdd:pfam05622 149 ------DLRRQVKLLEERNAEYMQRTLQLEEELKKA----NALRGQLETYKRQVQELHGKLSEESKKADKLEFEykkLEE 218
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 556 KMYSVTKERDDLKNK----------LKAEEEKGNDLLSRVNMLKNRLQSLEAIEKDFPKNKLnqdsgKSTTALHQENNKI 625
Cdd:pfam05622 219 KLEALQKEKERLIIErdtlretneeLRCAQLQQAELSQADALLSPSSDPGDNLAAEIMPAEI-----REKLIRLQHENKM 293
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 626 KELSQEvERLKLKLKDMKAIEDDLMKTEDEYETlERRYANERdkaqflSKELEHVKMELTKYKLAEKTETSHEQWLFKRL 705
Cdd:pfam05622 294 LRLGQE-GSYRERLTELQQLLEDANRRKNELET-QNRLANQR------ILELQQQVEELQKALQEQGSKAEDSSLLKQKL 365
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 706 QEEEAKSGHLSREVDALKEKIHEYMATEDLICHLQGDHsvLQKKLNQQENRNRDLGreiENLTKELERYRHFSKSLRPSL 785
Cdd:pfam05622 366 EEHLEKLHEAQSELQKKKEQIEELEPKQDSNLAQKIDE--LQEALRKKDEDMKAME---ERYKKYVEKAKSVIKTLDPKQ 440
|
490
....*....|....*.
gi 1622909575 786 NGRRISDTQVFSKEVQ 801
Cdd:pfam05622 441 NPASPPEIQALKNQLL 456
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
230-549 |
2.70e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 45.33 E-value: 2.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 230 EELTKLKSfalMVVDEQQRLTAQLT--LQ-RQKIQELttnaKETHTKLALAEARVQEEEQKATRLEKELQTQTTKFHQDQ 306
Cdd:COG3096 389 EEVDSLKS---QLADYQQALDVQQTraIQyQQAVQAL----EKARALCGLPDLTPENAEDYLAAFRAKEQQATEEVLELE 461
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 307 HtimaKLTNEDSQNRQLQQKLAALSRQIDELEeTNRSLRKAEEELQDIKEKISKGEYGNAgIMAEVEELRKRVldmegkd 386
Cdd:COG3096 462 Q----KLSVADAARRQFEKAYELVCKIAGEVE-RSQAWQTARELLRRYRSQQALAQRLQQ-LRAQLAELEQRL------- 528
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 387 EELIKMEEQCRDLNKRLEKETLQSKDFKLEVEKLSKRimaLEKLEDAFNKSKQEcyslkcnlekeRMttkQLSQELESLK 466
Cdd:COG3096 529 RQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQ---LEELEEQAAEAVEQ-----------RS---ELRQQLEQLR 591
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 467 GRIKELEAIESRLekteFTLKEDLTKLKTLTvmfvderktmSEKLKKTEDKLQAAssQLQVEQNKVTTVTEKLIEETKRA 546
Cdd:COG3096 592 ARIKELAARAPAW----LAAQDALERLREQS----------GEALADSQEVTAAM--QQLLEREREATVERDELAARKQA 655
|
...
gi 1622909575 547 LKS 549
Cdd:COG3096 656 LES 658
|
|
| PspC_subgroup_1 |
NF033838 |
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ... |
291-671 |
2.97e-04 |
|
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.
Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 45.00 E-value: 2.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 291 LEKELQTQTTKFHQDQHTimakltnedsQNRQLQQKLAALSRQIdeLEETNRSLRKAEEEL-QDIKEKISkgeygnagim 369
Cdd:NF033838 67 LEKILSEIQKSLDKRKHT----------QNVALNKKLSDIKTEY--LYELNVLKEKSEAELtSKTKKELD---------- 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 370 AEVEELRKRVLDMEGKDEELIKMEEQCRDLNKRLEKE------TLQSKDFKLEVEKLSKRImalekledafNKSKQECYS 443
Cdd:NF033838 125 AAFEQFKKDTLEPGKKVAEATKKVEEAEKKAKDQKEEdrrnypTNTYKTLELEIAESDVEV----------KKAELELVK 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 444 LKCNLEKERMTTKQLSQELESLKGRIKELEAIESRLEKTEFTLKEDLTKLKTLTVMFVDERKTMSEKLKKTEDKLQAASS 523
Cdd:NF033838 195 EEAKEPRDEEKIKQAKAKVESKKAEATRLEKIKTDREKAEEEAKRRADAKLKEAVEKNVATSEQDKPKRRAKRGVLGEPA 274
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 524 QLQVEQNKVTTVTEKLIEETKRALKSKTdvEEKMYSVTKERDDLKNKLKAEEEKgndllSRVNMLKNRLQSL--EAIEKD 601
Cdd:NF033838 275 TPDKKENDAKSSDSSVGEETLPSPSLKP--EKKVAEAEKKVEEAKKKAKDQKEE-----DRRNYPTNTYKTLelEIAESD 347
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 602 FPKNKLNQDSGKSTTALHQENNKIKELSQEVERLKLKLKDMKAIEDDLMKTEDEyetlERRYANERDKAQ 671
Cdd:NF033838 348 VKVKEAELELVKEEAKEPRNEEKIKQAKAKVESKKAEATRLEKIKTDRKKAEEE----AKRKAAEEDKVK 413
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
198-405 |
3.18e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 45.01 E-value: 3.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 198 QECERLKKLIDQEIKS----QEEKEQEKEKRVTTLKEELTKLKSFALMVVDEQQRLTAQLTLQRQKIQELTTNAKETHTK 273
Cdd:PHA02562 184 QTLDMKIDHIQQQIKTynknIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTA 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 274 LALAEARVQeeeqkatRLEKELqtqttKFHQDQHT-------------IMAKLTNedsQNRQLQQKLAALSRQIDELEET 340
Cdd:PHA02562 264 AAKIKSKIE-------QFQKVI-----KMYEKGGVcptctqqisegpdRITKIKD---KLKELQHSLEKLDTAIDELEEI 328
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1622909575 341 NRSLRKAEEELQDIKEKISKGEYG-------NAGIMAEVEELRKRVLDmegKDEELIKMEEQCRDLNKRLEK 405
Cdd:PHA02562 329 MDEFNEQSKKLLELKNKISTNKQSlitlvdkAKKVKAAIEELQAEFVD---NAEELAKLQDELDKIVKTKSE 397
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
232-440 |
5.00e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.37 E-value: 5.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 232 LTKLKSFALMVVDEQQRLTAQLTLQRQKIQEL-------TTNAKETHTKLALAEARVQEEEQKATRLEKELQTQTTKFHQ 304
Cdd:COG4717 293 LAREKASLGKEAEELQALPALEELEEEELEELlaalglpPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEI 372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 305 DQHTIMAKLTNEDS---------QNRQLQQKLAALSRQIDELEETNRSLRKA------EEELQDIKEKISKGEygnagim 369
Cdd:COG4717 373 AALLAEAGVEDEEElraaleqaeEYQELKEELEELEEQLEELLGELEELLEAldeeelEEELEELEEELEELE------- 445
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622909575 370 AEVEELRKRVLDMEgkdEELIKMEEQCRDLNKRLEKETLQSKdFKLEVEKLSKRIMALEKLEDAFNKSKQE 440
Cdd:COG4717 446 EELEELREELAELE---AELEQLEEDGELAELLQELEELKAE-LRELAEEWAALKLALELLEEAREEYREE 512
|
|
| CagA_N |
pfam18971 |
CagA protein; The Helicobacter pylori type IV secretion effector CagA is a major bacterial ... |
246-556 |
5.87e-04 |
|
CagA protein; The Helicobacter pylori type IV secretion effector CagA is a major bacterial virulence determinant and critical for gastric carcinogenesis. X-ray crystallographic analysis of the N-terminal CagA fragment (residues 1-876) revealed that the region has a structure comprised of three discrete domains. Domain I constitutes a mobile CagA N terminus, while Domain II tethers CagA to the plasma membrane by interacting with membrane phosphatidylserine. Domain III interacts intramolecularly with the intrinsically disordered C-terminal region, and this interaction potentiates the pathogenic scaffold/hub function of CagA.
Pssm-ID: 408741 [Multi-domain] Cd Length: 876 Bit Score: 43.99 E-value: 5.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 246 QQRLTAQ-LTLQRQK--IQELTTNAKETHTKL-----ALAEARVQEEEQKATRLEKELQTQTTKFHQDQHTIMAKLTNED 317
Cdd:pfam18971 562 ENKLTAKgLSLQEANklIKDFLSSNKELAGKAlnfnkAVAEAKSTGNYDEVKKAQKDLEKSLRKREHLEKEVEKKLESKS 641
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 318 SQNRQLQQKLAALSrQIDEL-----EETNR---------SLRKAEEELQDIKEKISKgeygnagimaEVEELRKRVLDME 383
Cdd:pfam18971 642 GNKNKMEAKAQANS-QKDEIfalinKEANRdaraiaytqNLKGIKRELSDKLEKISK----------DLKDFSKSFDEFK 710
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 384 -GKDEELIKMEEQCRDLNKRLeKETLQSKDFKLEVEKLSKrimALEKLEDAFNKSKQECYSLKCNLE---KERMTTKQLS 459
Cdd:pfam18971 711 nGKNKDFSKAEETLKALKGSV-KDLGINPEWISKVENLNA---ALNEFKNGKNKDFSKVTQAKSDLEnsvKDVIINQKVT 786
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 460 QELESLKGRIKELEAIE--SRLEKTeftlkedLTKLKTLTvmfvdeRKTMSEKLKKTEDKLQAASSQL-QVEQNKV--TT 534
Cdd:pfam18971 787 DKVDNLNQAVSVAKAMGdfSRVEQV-------LADLKNFS------KEQLAQQAQKNEDFNTGKNSELyQSVKNSVnkTL 853
|
330 340
....*....|....*....|....
gi 1622909575 535 VTEKL--IEETKRAlKSKTDVEEK 556
Cdd:pfam18971 854 VGNGLsgIEATALA-KNFSDIKKE 876
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
245-409 |
6.10e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.16 E-value: 6.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 245 EQQRLTAQLTLQRQKIQELTTNAKETHTKLALAEARVQEEEQKATRLEKELQTQTTKFHQDQHTiMAKLTNEDSQNRQLQ 324
Cdd:COG1196 664 GGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALE-EQLEAEREELLEELL 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 325 QKLAALSRQIDELEETNRSLRKAEEELQDIKEKISKGEYGNAGIMAEVEELRKRVLDMEGKDEELIKMEEQCRDLNKRLE 404
Cdd:COG1196 743 EEEELLEEEALEELPEPPDLEELERELERLEREIEALGPVNLLAIEEYEELEERYDFLSEQREDLEEARETLEEAIEEID 822
|
....*
gi 1622909575 405 KETLQ 409
Cdd:COG1196 823 RETRE 827
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
313-662 |
6.94e-04 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 43.67 E-value: 6.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 313 LTNEDSQNRQLQQKLAALSRQIDELEETNRSLRKAEEELQDIKEKISK------GEYGNAgiMAEVEElrkrvlDMEGKD 386
Cdd:PRK04778 107 INEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKsllanrFSFGPA--LDELEK------QLENLE 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 387 EELIKMEE--------QCRDLNKRLEKETLQSKDFKLEVEKLSKRIMA-----LEKLEDAFNKSKQECYSLkcnlekerm 453
Cdd:PRK04778 179 EEFSQFVEltesgdyvEAREILDQLEEELAALEQIMEEIPELLKELQTelpdqLQELKAGYRELVEEGYHL--------- 249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 454 TTKQLSQELESLKGRIKELEA--IESRLEKTEFTLKEDLTKLKTLTVMF---VDERKTM---SEKLKKTEDKLQAASSQL 525
Cdd:PRK04778 250 DHLDIEKEIQDLKEQIDENLAllEELDLDEAEEKNEEIQERIDQLYDILereVKARKYVeknSDTLPDFLEHAKEQNKEL 329
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 526 QVEQNKVT---TVTEKLIEETK-----------RALKSKTDVEEKM--YSVTKER-DDLKNKLKAEEEKGNDllsrvnmL 588
Cdd:PRK04778 330 KEEIDRVKqsyTLNESELESVRqlekqleslekQYDEITERIAEQEiaYSELQEElEEILKQLEEIEKEQEK-------L 402
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 589 KNRLQSLEAIEKDFPKNKLNQDSGKSTTALHQEN------------------NKIKELSQEVERLKLklkDMKAIEDDLM 650
Cdd:PRK04778 403 SEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKsnlpglpedylemffevsDEIEALAEELEEKPI---NMEAVNRLLE 479
|
410
....*....|..
gi 1622909575 651 KTEDEYETLERR 662
Cdd:PRK04778 480 EATEDVETLEEE 491
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
273-699 |
6.98e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 44.04 E-value: 6.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 273 KLALAEARVQEEEQKATRLEKELQTQTTKFHQDQhtimaKLTNEDSQNRQLQQKLAALSRQIDELEetnRSLRKAEEELQ 352
Cdd:pfam10174 186 RIAEAEMQLGHLEVLLDQKEKENIHLREELHRRN-----QLQPDPAKTKALQTVIEMKDTKISSLE---RNIRDLEDEVQ 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 353 DIKEKISKGEYGNAGIMAEVEELRKRVLDMEGK----DEELIKMEEQCRDLNKRLEKETLQSKDFKLEVEKLSKRIMALE 428
Cdd:pfam10174 258 MLKTNGLLHTEDREEEIKQMEVYKSHSKFMKNKidqlKQELSKKESELLALQTKLETLTNQNSDCKQHIEVLKESLTAKE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 429 KLEdafNKSKQECYSLKCNL-EKERM---TTKQLSQELESLKGRIKELEAIESRLEKTEFTLKEDLTKLKTLTVMFVDER 504
Cdd:pfam10174 338 QRA---AILQTEVDALRLRLeEKESFlnkKTKQLQDLTEEKSTLAGEIRDLKDMLDVKERKINVLQKKIENLQEQLRDKD 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 505 KTMSEkLKKTEDKLQAASSQlqvEQNKVTTVTEKLIEETK--RALKSKTDVE-----EKMYSVTKERDDLKNKLKA---- 573
Cdd:pfam10174 415 KQLAG-LKERVKSLQTDSSN---TDTALTTLEEALSEKERiiERLKEQREREdrerlEELESLKKENKDLKEKVSAlqpe 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 574 ---EEEKGNDLLSRVNML-------KNRLQSLE-AIEKDF-PKNKLNQDSGKSTTALHQE------NNKIKELSQEV--- 632
Cdd:pfam10174 491 lteKESSLIDLKEHASSLassglkkDSKLKSLEiAVEQKKeECSKLENQLKKAHNAEEAVrtnpeiNDRIRLLEQEVary 570
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622909575 633 -----------ERLKLKLKDMKAIEDDLMKTEDEYETLERRYANERDKAqflSKELEHVKMELTKYKLAEKTETSHEQ 699
Cdd:pfam10174 571 keesgkaqaevERLLGILREVENEKNDKDKKIAELESLTLRQMKEQNKK---VANIKHGQQEMKKKGAQLLEEARRRE 645
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
169-406 |
8.01e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 8.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 169 RQTILELEEEKRKHKEYMEKSDEFICLLEQECERLKKLidQEIKSQEEKEQEKEKRVTTLKEELTKLKSFAlmvvDEQQR 248
Cdd:COG4913 616 EAELAELEEELAEAEERLEALEAELDALQERREALQRL--AEYSWDEIDVASAEREIAELEAELERLDASS----DDLAA 689
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 249 LTAQLTLQRQKIQELTTNAKETHTKLALAEARVQEEEQKATRLEKELQTQTTKFHQDQHTIMAKLTNEDSQNRQLQQKLA 328
Cdd:COG4913 690 LEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRE 769
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 329 ALSRQIDELEETnrsLRKAEEELQDIKEKIsKGEYGN--AGIMAEVEELRK--RVLDmEGKDEELIKMEEQCRDLNKRLE 404
Cdd:COG4913 770 NLEERIDALRAR---LNRAEEELERAMRAF-NREWPAetADLDADLESLPEylALLD-RLEEDGLPEYEERFKELLNENS 844
|
..
gi 1622909575 405 KE 406
Cdd:COG4913 845 IE 846
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
232-466 |
8.65e-04 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 43.74 E-value: 8.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 232 LTKLKSFALMVVDeqQRLTAQLTLQrQKIQELTTNAKETHTKLALA---EARVQEEEQKATRLEKELQTQTTKFHQDQHT 308
Cdd:PLN02939 147 LNQARLQALEDLE--KILTEKEALQ-GKINILEMRLSETDARIKLAaqeKIHVEILEEQLEKLRNELLIRGATEGLCVHS 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 309 IMAKLTNEDSQNRQLQQKLAALSRQIDELEETNR--------------SLRKAEEELQDIKEKISK-GEYGNAGIMAEVE 373
Cdd:PLN02939 224 LSKELDVLKEENMLLKDDIQFLKAELIEVAETEErvfklekerslldaSLRELESKFIVAQEDVSKlSPLQYDCWWEKVE 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 374 ELRKRVLDMEGKDEELIKMEEQCRDLNKRLEK--ETL-QSKDFKLEVEKLSKRIMALEKLEDAFNKSKQECYSlkcNLEK 450
Cdd:PLN02939 304 NLQDLLDRATNQVEKAALVLDQNQDLRDKVDKleASLkEANVSKFSSYKVELLQQKLKLLEERLQASDHEIHS---YIQL 380
|
250
....*....|....*.
gi 1622909575 451 ERMTTKQLSQELESLK 466
Cdd:PLN02939 381 YQESIKEFQDTLSKLK 396
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
321-576 |
8.72e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 8.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 321 RQLQQKLAALSRQIDELEETNRSLRKAEEE---LQDIKEKisKGEYGNAGIMAEVEELRKRVLDMEGKDEELIKMEEQCR 397
Cdd:COG4913 221 PDTFEAADALVEHFDDLERAHEALEDAREQielLEPIREL--AERYAAARERLAELEYLRAALRLWFAQRRLELLEAELE 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 398 DLNKRLEKETLQSKDFKLEVEKLSKRIMALEK-LEDAFNKSKQEcyslkcnLEKERmttKQLSQELESLKGRIKELEAIE 476
Cdd:COG4913 299 ELRAELARLEAELERLEARLDALREELDELEAqIRGNGGDRLEQ-------LEREI---ERLERELEERERRRARLEALL 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 477 SRLEKTEFTLKEDLTKLKTLTVMFVDERKTMSEKLKKTEDKLQAASSQLQVEQnkvttvtEKLIEETKRALKSKTDVEEK 556
Cdd:COG4913 369 AALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRREL-------RELEAEIASLERRKSNIPAR 441
|
250 260
....*....|....*....|
gi 1622909575 557 MYSVtkeRDDLKNKLKAEEE 576
Cdd:COG4913 442 LLAL---RDALAEALGLDEA 458
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
172-517 |
9.02e-04 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 43.69 E-value: 9.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 172 ILELEEEKRKHKEYMEKSDEFIC-----LLEQECERLKKLIDQEIkSQEEKEQEKEKRVTTLKEELTKLKSfalmvvdEQ 246
Cdd:PLN03229 431 VRELEGEVEKLKEQILKAKESSSkpselALNEMIEKLKKEIDLEY-TEAVIAMGLQERLENLREEFSKANS-------QD 502
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 247 QRLTAQLTLQRQKI-QELTTNAKETHTKLALAEARVQEEEQKATRLEKELQTQTTKFHQDqhtiMAKLTNEDSQNRQLQQ 325
Cdd:PLN03229 503 QLMHPVLMEKIEKLkDEFNKRLSRAPNYLSLKYKLDMLNEFSRAKALSEKKSKAEKLKAE----INKKFKEVMDRPEIKE 578
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 326 KLAALSRQIdeleeTNRSLRKAEEELQDIKEKISKGEYGNAGIMAEVeelrkrvldMEGKDEELIKMEEQCRDLNKRLEK 405
Cdd:PLN03229 579 KMEALKAEV-----ASSGASSGDELDDDLKEKVEKMKKEIELELAGV---------LKSMGLEVIGVTKKNKDTAEQTPP 644
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 406 ETLQSKdfkleVEKLSKRIMalEKLEDAFNKS--KQECYSLKCNLEKERMTTKQLSQE-LESLKGRIKE--LEAIESRle 480
Cdd:PLN03229 645 PNLQEK-----IESLNEEIN--KKIERVIRSSdlKSKIELLKLEVAKASKTPDVTEKEkIEALEQQIKQkiAEALNSS-- 715
|
330 340 350
....*....|....*....|....*....|....*..
gi 1622909575 481 ktefTLKEDLTKLKTLTVMFVDERKTMSEKLKKTEDK 517
Cdd:PLN03229 716 ----ELKEKFEELEAELAAARETAAESNGSLKNDDDK 748
|
|
| PRK10246 |
PRK10246 |
exonuclease subunit SbcC; Provisional |
244-602 |
1.28e-03 |
|
exonuclease subunit SbcC; Provisional
Pssm-ID: 182330 [Multi-domain] Cd Length: 1047 Bit Score: 43.25 E-value: 1.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 244 DEQQRLTAQLTLQRQKIQELTTNAKEThtkLALAEARVQEEEQKATRLEKELQTQTTKFHQDQ------------HTIMA 311
Cdd:PRK10246 297 ERIQEQSAALAHTRQQIEEVNTRLQST---MALRARIRHHAAKQSAELQAQQQSLNTWLAEHDrfrqwnnelagwRAQFS 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 312 KLTNEDSQNRQLQQKLAALSRQIDELEETNRSLRKaeeelQDIKEKISKgeygnagiMAEVEELRKRvldmegkdeeLIK 391
Cdd:PRK10246 374 QQTSDREQLRQWQQQLTHAEQKLNALPAITLTLTA-----DEVAAALAQ--------HAEQRPLRQR----------LVA 430
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 392 MEEQCRDLNKRleketlqskdfkleveklskrimaLEKLEDAFNKSKQECYSLKCNLEKERMTTKQLSQELESLK----- 466
Cdd:PRK10246 431 LHGQIVPQQKR------------------------LAQLQVAIQNVTQEQTQRNAALNEMRQRYKEKTQQLADVKticeq 486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 467 -GRIKELEAIESRLEK------------------TEFTLKEDLTKLKTLTvmfvDERKTMSEKLKKTEDKLQAASSQLQV 527
Cdd:PRK10246 487 eARIKDLEAQRAQLQAgqpcplcgstshpaveayQALEPGVNQSRLDALE----KEVKKLGEEGAALRGQLDALTKQLQR 562
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622909575 528 EQNKVTTvtekLIEETKRALKSKTDVEEKMYSVTKERDDLKNKLKAEE--EKGNDLLSRVNMLKNRLQSLEAIEKDF 602
Cdd:PRK10246 563 DESEAQS----LRQEEQALTQQWQAVCASLNITLQPQDDIQPWLDAQEehERQLRLLSQRHELQGQIAAHNQQIIQY 635
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
507-671 |
1.29e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.51 E-value: 1.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 507 MSEKLKKTEDKLQAASSQLQVEQNKVTTVTEKlIEETKRALKS-KTDVEEKMYSVTKERDDLKNKLKAEEEKGN------ 579
Cdd:COG3883 28 LQAELEAAQAELDALQAELEELNEEYNELQAE-LEALQAEIDKlQAEIAEAEAEIEERREELGERARALYRSGGsvsyld 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 580 ---------DLLSRVNMLK----NRLQSLEAIEKDfpKNKLNQDSGKSTTALHQENNKIKELSQEVERLKLKLKDMKAIE 646
Cdd:COG3883 107 vllgsesfsDFLDRLSALSkiadADADLLEELKAD--KAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEALL 184
|
170 180
....*....|....*....|....*
gi 1622909575 647 DDLMKTEDEYETLERRYANERDKAQ 671
Cdd:COG3883 185 AQLSAEEAAAEAQLAELEAELAAAE 209
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
486-724 |
1.40e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 42.69 E-value: 1.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 486 LKEDLTKLKTLTVMfvderktmsEKLKKteDKLQAASSQLQVEQNKVTTVTEKL------IEETKRalKSKTDVEEKMYS 559
Cdd:PHA02562 155 LVEDLLDISVLSEM---------DKLNK--DKIRELNQQIQTLDMKIDHIQQQIktynknIEEQRK--KNGENIARKQNK 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 560 VTKERDDLKNkLKAEEEKGNDLLSRVNM------------------LKNRLQSLEAIEKDFPKNklnQDSGKSTTALHQE 621
Cdd:PHA02562 222 YDELVEEAKT-IKAEIEELTDELLNLVMdiedpsaalnklntaaakIKSKIEQFQKVIKMYEKG---GVCPTCTQQISEG 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 622 NNKIKELSQEVERLKLKLKDMKAIEDDLMKTEDEY--------------ETLERRYANERDKAQFLSKELEHVKMELTKY 687
Cdd:PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFneqskkllelknkiSTNKQSLITLVDKAKKVKAAIEELQAEFVDN 377
|
250 260 270
....*....|....*....|....*....|....*..
gi 1622909575 688 KLAEKTETSHEQWLFKRLQEEEAKSGHLSREVDALKE 724
Cdd:PHA02562 378 AEELAKLQDELDKIVKTKSELVKEKYHRGIVTDLLKD 414
|
|
| CortBP2 |
pfam09727 |
Cortactin-binding protein-2; This entry is the first approximately 250 residues of ... |
387-505 |
1.66e-03 |
|
Cortactin-binding protein-2; This entry is the first approximately 250 residues of cortactin-binding protein 2. In addition to being a positional candidate for autism this protein is expressed at highest levels in the brain in humans. The human protein has six associated ankyrin repeat domains pfam00023 towards the C-terminus which act as protein-protein interaction domains.
Pssm-ID: 462860 [Multi-domain] Cd Length: 187 Bit Score: 41.05 E-value: 1.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 387 EELIKMEEQCRDLNKRLEKETLqskdfklEVEKLSKRimALEKLEDafNKSKQECYSLK-----CNLEKERmttKQLSQE 461
Cdd:pfam09727 80 AELEKLVEKQRETQRRMLEQLA-------AAEKRHRR--VIRELEE--EKRKHARDTAQgddftYLLEKER---ERLKQE 145
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1622909575 462 LESLKGRIKELEAiesRLEKTEFTLKEDLTKLKTLTVMFVDERK 505
Cdd:pfam09727 146 LEQEKAQQKRLEK---ELKKLLEKLEEELSKQKQIALLLVKERK 186
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
535-722 |
1.77e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 42.54 E-value: 1.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 535 VTEKLIEEtkralksKTDVEEKMYSVTKERDDlkNKLKAEEEKGNDLLSRVNMLKNRLQSLEaiekdfpknklnqdsgks 614
Cdd:COG2433 381 ALEELIEK-------ELPEEEPEAEREKEHEE--RELTEEEEEIRRLEEQVERLEAEVEELE------------------ 433
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 615 ttalhqenNKIKELSQEVERLKLKLKDMKAIEDDLMKTEDEYETLERRYANerdkaqfLSKELEHVKMELTkyKLAEKTE 694
Cdd:COG2433 434 --------AELEEKDERIERLERELSEARSEERREIRKDREISRLDREIER-------LERELEEERERIE--ELKRKLE 496
|
170 180
....*....|....*....|....*....
gi 1622909575 695 tsheqwLFKRLQEEEAKSGHLS-REVDAL 722
Cdd:COG2433 497 ------RLKELWKLEHSGELVPvKVVEKF 519
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
372-816 |
1.95e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.58 E-value: 1.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 372 VEELRKRVLDMEGKDEELIKMEEQCRDLNKRLEKETLQSKDFKLEVEKLSKRIMALEKLEDAFNKSKQECYSLKCNLEKE 451
Cdd:PRK01156 175 IDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRY 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 452 RMTTKQLSQELESLKGRIKELEAIESRLEKTE--------------FTLKEDLTKL------------------KTLTVM 499
Cdd:PRK01156 255 ESEIKTAESDLSMELEKNNYYKELEERHMKIIndpvyknrnyindyFKYKNDIENKkqilsnidaeinkyhaiiKKLSVL 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 500 FVD-----ERKTMSEKLKKTEDKLQAASSQLQVEQNKVTTVTEKLIEETKRALKSKTDVEEKMYSVTKERDDLKNKLKAE 574
Cdd:PRK01156 335 QKDyndyiKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEI 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 575 EEKGNDLLSRVNMLKNRLQSLEAIEKDFPKNkLNQDSGKST-----TALHQE---------NNKIKELSQEVERLKLKLK 640
Cdd:PRK01156 415 NVKLQDISSKVSSLNQRIRALRENLDELSRN-MEMLNGQSVcpvcgTTLGEEksnhiinhyNEKKSRLEEKIREIEIEVK 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 641 DMKAIEDDLMKTEDEYETLE-RRYANERDKAQFLSKELEHVKMELTKYKlaektetsheqwlFKRLQEEEAKSGHLSREV 719
Cdd:PRK01156 494 DIDEKIVDLKKRKEYLESEEiNKSINEYNKIESARADLEDIKIKINELK-------------DKHDKYEEIKNRYKSLKL 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 720 DALKEKIHEY---MATEDLIC--HLQGDHSVLQKKLNQQENRNRDLGREIENLTKELERYrhfSKSLRPSLNGRRISDTQ 794
Cdd:PRK01156 561 EDLDSKRTSWlnaLAVISLIDieTNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKS---IREIENEANNLNNKYNE 637
|
490 500
....*....|....*....|..
gi 1622909575 795 VFSKEVQTEAVDNEPPDYKSLI 816
Cdd:PRK01156 638 IQENKILIEKLRGKIDNYKKQI 659
|
|
| HOOK |
pfam05622 |
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from ... |
200-610 |
2.28e-03 |
|
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organizms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas this central coiled-coil motif mediates homodimerization and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localized to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. This entry includes the central coiled-coiled domain and the divergent C-terminal domain.
Pssm-ID: 461694 [Multi-domain] Cd Length: 528 Bit Score: 41.98 E-value: 2.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 200 CERLKKLIdQEIKSQEEKEQEKEKRVTTLKEELTKLKSFAlmvvDEQQRLTAQLTLQRQKIQELTTNAK------ETHTK 273
Cdd:pfam05622 89 CEELEKEV-LELQHRNEELTSLAEEAQALKDEMDILRESS----DKVKKLEATVETYKKKLEDLGDLRRqvklleERNAE 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 274 LALAEARVQEEEQKATRLEKELQT---QTTKFHQDQHTIMAKLTNEDSQNRQLQQKLAALSRQIDELEETNRSLRKAEEE 350
Cdd:pfam05622 164 YMQRTLQLEEELKKANALRGQLETykrQVQELHGKLSEESKKADKLEFEYKKLEEKLEALQKEKERLIIERDTLRETNEE 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 351 L---QDIKEKISKGEYGNAGIMAEVEELRKRVLDMEGKdEELIKMEEQcrdlNKRL-EKETLQSKDfkleveklskRIMA 426
Cdd:pfam05622 244 LrcaQLQQAELSQADALLSPSSDPGDNLAAEIMPAEIR-EKLIRLQHE----NKMLrLGQEGSYRE----------RLTE 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 427 LEKLEDAFNKSKQEcysLKCNLEKERMTTKQLSQELESLKgriKELEAIESRLEKTEfTLKEDLTKLKtltvmfvderkt 506
Cdd:pfam05622 309 LQQLLEDANRRKNE---LETQNRLANQRILELQQQVEELQ---KALQEQGSKAEDSS-LLKQKLEEHL------------ 369
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 507 msEKLKKTEDKLQAASSQLQVEQNKVTTVTEKLIEETKRALKSKTD----VEE--KMYsVTKERDDLKN-KLKAEEEKGN 579
Cdd:pfam05622 370 --EKLHEAQSELQKKKEQIEELEPKQDSNLAQKIDELQEALRKKDEdmkaMEEryKKY-VEKAKSVIKTlDPKQNPASPP 446
|
410 420 430
....*....|....*....|....*....|.
gi 1622909575 580 DLLSRVNMLKNRLQSLEAIEKDFPKNKLNQD 610
Cdd:pfam05622 447 EIQALKNQLLEKDKKIEHLERDFEKSKLQRE 477
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
227-433 |
2.37e-03 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 41.98 E-value: 2.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 227 TLKEELTKLKSFALMVVDEQQRLTAQLT------LQRQKIQELTT------NAKETHTKLALAEARVQEEEQKATRLEKE 294
Cdd:COG0497 169 ALKKELEELRADEAERARELDLLRFQLEeleaaaLQPGEEEELEEerrrlsNAEKLREALQEALEALSGGEGGALDLLGQ 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 295 LQTQttkfhqdqhtiMAKLTNEDSQnrqLQQKLAALSRQIDELEETNRSLRKA-------EEELQDIKEKIS-----KGE 362
Cdd:COG0497 249 ALRA-----------LERLAEYDPS---LAELAERLESALIELEEAASELRRYldslefdPERLEEVEERLAllrrlARK 314
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1622909575 363 YGN--AGIMAEVEELRKRVLDMEGKDEELIKMEEQCRDLNKRLEKETlqskdfklevEKLSK-RIMALEKLEDA 433
Cdd:COG0497 315 YGVtvEELLAYAEELRAELAELENSDERLEELEAELAEAEAELLEAA----------EKLSAaRKKAAKKLEKA 378
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
148-365 |
2.45e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 42.26 E-value: 2.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 148 EKHKESYRRILGQLLVVEKSHRQTILELEEEKRK---HKEYMEKSDEFICLLEQECERLKKLIDQEIKSQEEKEQEKEKR 224
Cdd:TIGR00618 658 ERVREHALSIRVLPKELLASRQLALQKMQSEKEQltyWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAR 737
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 225 VTTLKEELTKLKSFALMV----VDEQQRLTAQLTLQRQKIQELTTNAKETHTKLALAEARVQEEEQKATRLEKELQTQTT 300
Cdd:TIGR00618 738 EDALNQSLKELMHQARTVlkarTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDED 817
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622909575 301 KFHQDQHTIMAKLTNEDSQNRQLQQKLAALSRQIDELEETNRSLRKAEEELQDIKEKISKGEYGN 365
Cdd:TIGR00618 818 ILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKLNGIN 882
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
536-771 |
2.60e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.97 E-value: 2.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 536 TEKLIEETKRALksktdveEKMYSVTKERDDLKNKLKAEEEKGNDLLSRVNMLKNRLQSLEAIEKDFPKNKLnqdsgkst 615
Cdd:TIGR02168 177 TERKLERTRENL-------DRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREEL-------- 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 616 talHQENNKIKELSQEVERLKLKLKdmkAIEDDLMKTEDEYETLERRYANERDKAQFLSKELEHVKMELTKYKLAEKTET 695
Cdd:TIGR02168 242 ---EELQEELKEAEEELEELTAELQ---ELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLE 315
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622909575 696 SHEQWLFKRLQEEEAKSGHLSREVDALKEKIHEYMATEDLichLQGDHSVLQKKLNQQENRNRDLGREIENLTKEL 771
Cdd:TIGR02168 316 RQLEELEAQLEELESKLDELAEELAELEEKLEELKEELES---LEAELEELEAELEELESRLEELEEQLETLRSKV 388
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
158-360 |
2.83e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 2.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 158 LGQLLVVEKSHRQTILELEEEKRKHKEYMEKSDEFICLLEQECERLKK---LIDQEIKSQEEKEQEKEKRVTTLKEELTK 234
Cdd:COG4942 29 LEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQelaALEAELAELEKEIAELRAELEAQKEELAE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 235 LKSFA-----------LMVVDEQQRLTAQLTLQRQKIQELTTNAKETHTKLALAEARVQEEEQKATRLEKELQTQttkfh 303
Cdd:COG4942 109 LLRALyrlgrqpplalLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAEL----- 183
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1622909575 304 QDQHTIMAKLTNE-DSQNRQLQQKLAALSRQIDELEETNRSLRKAEEELQDIKEKISK 360
Cdd:COG4942 184 EEERAALEALKAErQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
228-773 |
4.75e-03 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 41.28 E-value: 4.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 228 LKEELTKLKSFALmvvDEQQRLTAQ-LTLQRQKIQELTTNAKETHTKLALAEA---RVQEEEQKATRLEkELQTqttkFH 303
Cdd:pfam07111 78 LEEEVRLLRETSL---QQKMRLEAQaMELDALAVAEKAGQAEAEGLRAALAGAemvRKNLEEGSQRELE-EIQR----LH 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 304 QDQHTIMAKLTNEDSQNrqLQQKLAALSRQIDELEETN----RSLRKAEEELQDIKEKISKGEYGNAGIMAEVEELRKRV 379
Cdd:pfam07111 150 QEQLSSLTQAHEEALSS--LTSKAEGLEKSLNSLETKRageaKQLAEAQKEAELLRKQLSKTQEELEAQVTLVESLRKYV 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 380 ldmegKDEELIKMEEQCRDLNKRLEKETLQ-----SKDFKLEVEKLSKRIMALEKL----EDAFNKSKQECYSLKcnlek 450
Cdd:pfam07111 228 -----GEQVPPEVHSQTWELERQELLDTMQhlqedRADLQATVELLQVRVQSLTHMlalqEEELTRKIQPSDSLE----- 297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 451 ermttKQLSQELESLKGRIKE-LEAIESRLEKTEFTLKEDLTKLKTLTVMFVDERKTMSEKLKKTEDKLQAASSQLQVEQ 529
Cdd:pfam07111 298 -----PEFPKKCRSLLNRWREkVFALMVQLKAQDLEHRDSVKQLRGQVAELQEQVTSQSQEQAILQRALQDKAAEVEVER 372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 530 NKVTTVTEKL--IEETKRALKSKTD-VEEKMYSVTKERDDLKNKLKAEEEKGNDLLSRVNMLKNRLQ------------- 593
Cdd:pfam07111 373 MSAKGLQMELsrAQEARRRQQQQTAsAEEQLKFVVNAMSSTQIWLETTMTRVEQAVARIPSLSNRLSyavrkvhtikglm 452
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 594 ---------------------------SLEAIEKDFPKNKLNQDSGKSTTALHQENNKIKElSQEVERLKLkLKDMKAIE 646
Cdd:pfam07111 453 arkvalaqlrqescpppppappvdadlSLELEQLREERNRLDAELQLSAHLIQQEVGRARE-QGEAERQQL-SEVAQQLE 530
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 647 DDLMKTEDEYETLERRYANERDKAQFLSKELEHVKMELTkyklaeKTETSHEQWLFKRLQEEEAKsghLSREVDALKEKI 726
Cdd:pfam07111 531 QELQRAQESLASVGQQLEVARQGQQESTEEAASLRQELT------QQQEIYGQALQEKVAEVETR---LREQLSDTKRRL 601
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 1622909575 727 HEYM--ATEDLICHLQGDHSVLQKKLNQQENR------NRDLGREIENLTKELER 773
Cdd:pfam07111 602 NEARreQAKAVVSLRQIQHRATQEKERNQELRrlqdeaRKEEGQRLARRVQELER 656
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
282-773 |
4.88e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 41.19 E-value: 4.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 282 QEEEQKATRLEKELQTQTTKFH--QDQHTIMAKLTNEDSQNRQLQQKLaalsRQIDELEETNRSLR-KAEEELQDIKEKI 358
Cdd:TIGR01612 1946 EKEPEIYTKIRDSYDTLLDIFKksQDLHKKEQDTLNIIFENQQLYEKI----QASNELKDTLSDLKyKKEKILNDVKLLL 2021
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 359 SKgeygnagimaeVEELRKRVLDMEGKDE--ELIKMEE-QCRDLNKRLEKETL-QSKDFKLEVEKLSKRIMALEKLEDAF 434
Cdd:TIGR01612 2022 HK-----------FDELNKLSCDSQNYDTilELSKQDKiKEKIDNYEKEKEKFgIDFDVKAMEEKFDNDIKDIEKFENNY 2090
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 435 NKSKQECYSLKCNLEKERMTTKQLSQELESLKGRIKELEaiESRLEKTEftLKEDLTKLKTLTVMFvdERKTMSEKLKKT 514
Cdd:TIGR01612 2091 KHSEKDNHDFSEEKDNIIQSKKKLKELTEAFNTEIKIIE--DKIIEKND--LIDKLIEMRKECLLF--SYATLVETLKSK 2164
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 515 edklQAASSQLQVEQNKVTTVTEKLIEETKRALKSKTDVEEKMYSVTKERDDLKNKLKAEEEKGNDLLSRVnmlKNRLQS 594
Cdd:TIGR01612 2165 ----VINHSEFITSAAKFSKDFFEFIEDISDSLNDDIDALQIKYNLNQTKKHMISILADATKDHNNLIEKE---KEATKI 2237
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 595 LEAIEKDFPKNKLNQDSgkstTALHqeNNKIK------ELSQEVERLKLKLKDMKAieddlmktedeYETLERRYANErd 668
Cdd:TIGR01612 2238 INNLTELFTIDFNNADA----DILH--NNKIQiiyfnsELHKSIESIKKLYKKINA-----------FKLLNISHINE-- 2298
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 669 KAQFLSKELEHVkMELTKYKLAEKTETSHE--QWLF-KRLQEEEAKSGHLSREVDALKEKIHeymateDLICHLQGDHSV 745
Cdd:TIGR01612 2299 KYFDISKEFDNI-IQLQKHKLTENLNDLKEidQYISdKKNIFLHALNENTNFNFNALKEIYD------DIINRENKADEI 2371
|
490 500
....*....|....*....|....*...
gi 1622909575 746 lqKKLNQQENRNrdLGREIENLTKELER 773
Cdd:TIGR01612 2372 --ENINNKENEN--IMQYIDTITKLTEK 2395
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
534-775 |
5.35e-03 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 40.28 E-value: 5.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 534 TVTEKLIEETKRALKSKTDVEEKMYSVTKERDDLKNKLKAEEEKGNDLLSRVNMLKNRLQSLEAIekdfpKNKLNQDSGK 613
Cdd:COG1340 1 SKTDELSSSLEELEEKIEELREEIEELKEKRDELNEELKELAEKRDELNAQVKELREEAQELREK-----RDELNEKVKE 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 614 STTALHQENNKIKELSQEVERLKLKLKDMKAIEDDLMKTEDEYETLERRYANER----------DKAQFLSKELEHVKME 683
Cdd:COG1340 76 LKEERDELNEKLNELREELDELRKELAELNKAGGSIDKLRKEIERLEWRQQTEVlspeeekelvEKIKELEKELEKAKKA 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 684 LTKYKLAEKTETSHEQW------LFKRLQEEEAKSGHLSREVDALKEKIHEYMATEDLichLQGDHSVLQKKLNQQENRN 757
Cdd:COG1340 156 LEKNEKLKELRAELKELrkeaeeIHKKIKELAEEAQELHEEMIELYKEADELRKEADE---LHKEIVEAQEKADELHEEI 232
|
250
....*....|....*...
gi 1622909575 758 RDLGREIENLTKELERYR 775
Cdd:COG1340 233 IELQKELRELRKELKKLR 250
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
135-699 |
6.02e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 41.19 E-value: 6.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 135 IYEKPMNELDKVVE--KHKES--------YRRILGQLLVVE------KSHRQTILELEEEKRKH-KEYMEKSDEFICLLE 197
Cdd:TIGR01612 745 IHGEINKDLNKILEdfKNKEKelsnkindYAKEKDELNKYKskiseiKNHYNDQINIDNIKDEDaKQNYDKSKEYIKTIS 824
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 198 QECERLKKLIDQeiksqeekeqekekrVTTLKEE-LTKLKSFalmvVDEQQRLTAQLTLQRQKIQELTTNAKE--THTKL 274
Cdd:TIGR01612 825 IKEDEIFKIINE---------------MKFMKDDfLNKVDKF----INFENNCKEKIDSEHEQFAELTNKIKAeiSDDKL 885
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 275 ALAEARVQEEE----QKATRLEKELQTQTTKFHQDQHTIMAKLTNEDSQN-RQLQQKL-AALSRQIDELEETNrslrkae 348
Cdd:TIGR01612 886 NDYEKKFNDSKslinEINKSIEEEYQNINTLKKVDEYIKICENTKESIEKfHNKQNILkEILNKNIDTIKESN------- 958
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 349 eelqdIKEKISKGEYGNAgIMAEVEELRKRVLDM-----EGKDEELIKMEEQCRDlNKRLEKETLQSKDFKlEVEKLSKR 423
Cdd:TIGR01612 959 -----LIEKSYKDKFDNT-LIDKINELDKAFKDAslndyEAKNNELIKYFNDLKA-NLGKNKENMLYHQFD-EKEKATND 1030
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 424 ImaLEKLEDAfNKSKQecyslkcNLEKERMTT-KQLSQELESLKGriKELEAIESR-LEKTEFT------LKEDLtKLKT 495
Cdd:TIGR01612 1031 I--EQKIEDA-NKNIP-------NIEIAIHTSiYNIIDEIEKEIG--KNIELLNKEiLEEAEINitnfneIKEKL-KHYN 1097
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 496 LTVMFVDERKTMSEKLKKTEDKLQAASSQLQVEQNKVTTV---TEKLIEETKRALKSKTDVEEKMYS------VTKERDD 566
Cdd:TIGR01612 1098 FDDFGKEENIKYADEINKIKDDIKNLDQKIDHHIKALEEIkkkSENYIDEIKAQINDLEDVADKAISnddpeeIEKKIEN 1177
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 567 LKNKLKAEE---EKGNDLLSRVNMLKNRLQSLEAIEKdfpknkLNQDSGKSTTALHQEnnKIKELSQEVERLklkLKDMK 643
Cdd:TIGR01612 1178 IVTKIDKKKniyDEIKKLLNEIAEIEKDKTSLEEVKG------INLSYGKNLGKLFLE--KIDEEKKKSEHM---IKAME 1246
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*.
gi 1622909575 644 AIEDDLmkteDEYETLERRYANERDKAQFLSKELEHVKMELTKYKLAEKTETSHEQ 699
Cdd:TIGR01612 1247 AYIEDL----DEIKEKSPEIENEMGIEMDIKAEMETFNISHDDDKDHHIISKKHDE 1298
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
247-377 |
7.03e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 39.95 E-value: 7.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 247 QRLTAQLTLQRQKIQELTTNAKETHTKLALAEA---RVQ-----------EEEQKATRLEKELQTQTTKFHQDQhtimak 312
Cdd:PRK09039 63 AELADLLSLERQGNQDLQDSVANLRASLSAAEAersRLQallaelagagaAAEGRAGELAQELDSEKQVSARAL------ 136
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622909575 313 ltnedSQNRQLQQKLAALSRQIDELEEtnrSLRKAEEELQDIKEKISK-GEYGNAGIMAEVEELRK 377
Cdd:PRK09039 137 -----AQVELLNQQIAALRRQLAALEA---ALDASEKRDRESQAKIADlGRRLNVALAQRVQELNR 194
|
|
| AAA_13 |
pfam13166 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
326-474 |
7.20e-03 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease.
Pssm-ID: 463796 [Multi-domain] Cd Length: 712 Bit Score: 40.43 E-value: 7.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 326 KLAALSRQIDELEETNRSLRKAEEELQDIKEKISKGEYGNAGIMAEVEELRK---RVLDMEGKDEELIKMEEQCRDLNKR 402
Cdd:pfam13166 298 AISSLLAQLPAVSDLASLLSAFELDVEDIESEAEVLNSQLDGLRRALEAKRKdpfKSIELDSVDAKIESINDLVASINEL 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 403 LEKETLQSKDFKLEVEKLSKRIMA---------LEKLEDAFNKSKQECYSLKCNLekermttKQLSQELESLKGRIKELE 473
Cdd:pfam13166 378 IAKHNEITDNFEEEKNKAKKKLRLhlveefkseIDEYKDKYAGLEKAINSLEKEI-------KNLEAEIKKLREEIKELE 450
|
.
gi 1622909575 474 A 474
Cdd:pfam13166 451 A 451
|
|
| ClyA_Cry6Aa-like |
cd22656 |
Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes ... |
247-362 |
7.23e-03 |
|
Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes pesticidal Cry6Aa toxin from Bacillus thuringiensis, one of the many parasporal crystal (Cry) toxins produced during the sporulation phase of growth. Many of these proteins are toxic to numerous insect species and have been effectively used as proteinaceous insecticides to directly kill insect pests; some have been used to control insect growth on transgenic agricultural plants. Cry6Aa exists as a protoxin, which is activated by cleavage using trypsin. Structure studies for Cry6Aa support a mechanism of action by pore formation, similar to cytolysin A (ClyA)-type alpha pore-forming toxins (alpha-PFTs) such as HblB, and bioassay and mutation studies show that Cry6Aa is an active pore-forming toxin. Cry6Aa shows atypical features compared to other members of alpha-PFTs, including internal repeat sequences and small loop regions within major alpha helices.
Pssm-ID: 439154 [Multi-domain] Cd Length: 309 Bit Score: 40.05 E-value: 7.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 247 QRLTAQLTLQRQKIQELTTNAKETHTKLalaearvqeeeqkaTRLEKELQTQTTKFHQDQHTIMAKLTNEDSqnRQLQQK 326
Cdd:cd22656 117 KTIKALLDDLLKEAKKYQDKAAKVVDKL--------------TDFENQTEKDQTALETLEKALKDLLTDEGG--AIARKE 180
|
90 100 110
....*....|....*....|....*....|....*.
gi 1622909575 327 LAALSRQIDELEETNrsLRKAEEELQDIKEKISKGE 362
Cdd:cd22656 181 IKDLQKELEKLNEEY--AAKLKAKIDELKALIADDE 214
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
224-775 |
7.42e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.67 E-value: 7.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 224 RVTTLKEELTKLKSFALMVVDEQQRLTaqlTLQRqkIQELTTNAKETHTKLALAEA-----RVQEEEQKATRLEKELQtq 298
Cdd:COG4913 226 AADALVEHFDDLERAHEALEDAREQIE---LLEP--IRELAERYAAARERLAELEYlraalRLWFAQRRLELLEAELE-- 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 299 ttkfhqdqhtimakltnedsqnrQLQQKLAALSRQIDELEETnrsLRKAEEELQDIKEKISkgeyGNAGimAEVEELRKr 378
Cdd:COG4913 299 -----------------------ELRAELARLEAELERLEAR---LDALREELDELEAQIR----GNGG--DRLEQLER- 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 379 vlDMEGKDEELIKMEEQCRDLNKRLEKETLQSKDFKLEVEKLSKRIMA-LEKLEDAFNKSKQECYSLKCNLEKERMTTKQ 457
Cdd:COG4913 346 --EIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAAlLEALEEELEALEEALAEAEAALRDLRRELRE 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 458 LSQELESLKGR--------IKELEAIESRLEKTE-------------------------------FTL---KEDL----- 490
Cdd:COG4913 424 LEAEIASLERRksniparlLALRDALAEALGLDEaelpfvgelievrpeeerwrgaiervlggfaLTLlvpPEHYaaalr 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 491 ----TKLKT-LTVMFVDERK-----------TMSEKLKKTEDKLQA-ASSQLQVEQN--KVTTVTEklIEETKRAL---- 547
Cdd:COG4913 504 wvnrLHLRGrLVYERVRTGLpdperprldpdSLAGKLDFKPHPFRAwLEAELGRRFDyvCVDSPEE--LRRHPRAItrag 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 548 ---KSKT------------------DVEEKMYSVTKERDDLKNKLKAEEEKGNDLLSRVNMLKNRLQSLEAIEKDfpknk 606
Cdd:COG4913 582 qvkGNGTrhekddrrrirsryvlgfDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEY----- 656
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 607 lnQDSGKSTTALHQEnnkIKELSQEVERLKLKLKDMKAIEDDLMKTEDEYETLERRYANERDKAQFLSKELEHVKMELTK 686
Cdd:COG4913 657 --SWDEIDVASAERE---IAELEAELERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDE 731
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 687 YK-LAEKTETSHEQWLFKRLQE----------EEAKSGHLSREVDALKEKIHEymATEDLIchlqgdhSVLQKKLNQQEN 755
Cdd:COG4913 732 LQdRLEAAEDLARLELRALLEErfaaalgdavERELRENLEERIDALRARLNR--AEEELE-------RAMRAFNREWPA 802
|
650 660
....*....|....*....|
gi 1622909575 756 RNRDLGREIENLTKELERYR 775
Cdd:COG4913 803 ETADLDADLESLPEYLALLD 822
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
321-479 |
7.76e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.52 E-value: 7.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 321 RQLQQKLAALSRQID----ELEETNRSLRKAEEELQDIKEKISKGEY--GNAG-------IMAEVEELRKRVLDMEgkDE 387
Cdd:COG1579 34 AELEDELAALEARLEaaktELEDLEKEIKRLELEIEEVEARIKKYEEqlGNVRnnkeyeaLQKEIESLKRRISDLE--DE 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 388 ELIKMEeqcrdlnkrlEKETLQSkdfklEVEKLSKRimaLEKLEDAFNKSKQEcyslkcnLEKErmtTKQLSQELESLKG 467
Cdd:COG1579 112 ILELME----------RIEELEE-----ELAELEAE---LAELEAELEEKKAE-------LDEE---LAELEAELEELEA 163
|
170
....*....|...
gi 1622909575 468 RIKELEA-IESRL 479
Cdd:COG1579 164 EREELAAkIPPEL 176
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
187-505 |
8.56e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 39.89 E-value: 8.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 187 EKSDEFICLLEQECERLKKLIDQEIKSQEEKEQEKEKRVTTLKEELTKLKSFALMVVDEQQRLTAQLTLQRQKIQELTTN 266
Cdd:COG4372 9 GKARLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQ 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 267 AKETHTKLALAEARVQEEEQKATRLEKE----------LQTQTTKFHQDQHTIMAKLTNEDSQNRQLQQKLAALSRQIDE 336
Cdd:COG4372 89 LQAAQAELAQAQEELESLQEEAEELQEEleelqkerqdLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAA 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 337 LEETNRSLRKAE--EELQDIKEKISKGEYGNAGIMAEVEELRKRVLDMEGKDEELIKMEEQCRDLNKRLEKETLQSKDFK 414
Cdd:COG4372 169 LEQELQALSEAEaeQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDK 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 415 LEVEKLSKRIMALEKLEDAFNKSKQE-CYSLKCNLEKERMTTKQLSQELESLKGRIKELEAIESRLEKTEFTLKEDLTKL 493
Cdd:COG4372 249 EELLEEVILKEIEELELAILVEKDTEeEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKL 328
|
330
....*....|..
gi 1622909575 494 KTLTVMFVDERK 505
Cdd:COG4372 329 ELALAILLAELA 340
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
140-482 |
8.68e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.11 E-value: 8.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 140 MNELDKVVEKHKESYRRilGQLLVVEKSHRQTILELEEEKRKHKEYMEKSDEFICLLEQECERLKKL-IDQEIKSQEEKE 218
Cdd:pfam17380 271 LNQLLHIVQHQKAVSER--QQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIyAEQERMAMERER 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 219 QEKEKRVTTLKEELTKLKSFALMVVDEQQRLTAQLTLQRQKIQELTTNAKETHTKLALAEARVQEEEQKATRLEKELQTQ 298
Cdd:pfam17380 349 ELERIRQEERKRELERIRQEEIAMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAE 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 299 TTKFHQDQHTIMakltnEDSQNRQLQQ-KLAALSRQideleETNRSLRKAEEELQDIKEKISKGEYGNAgimaEVEELRK 377
Cdd:pfam17380 429 QEEARQREVRRL-----EEERAREMERvRLEEQERQ-----QQVERLRQQEEERKRKKLELEKEKRDRK----RAEEQRR 494
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622909575 378 RVLDMEGKDEELIKMEEQCRdlNKRLEKETLQSKDFKLEVEKlsKRIMALEKLEDAFNKSKQECYSLKCNLEKERMTTKQ 457
Cdd:pfam17380 495 KILEKELEERKQAMIEEERK--RKLLEKEMEERQKAIYEEER--RREAEEERRKQQEMEERRRIQEQMRKATEERSRLEA 570
|
330 340
....*....|....*....|....*
gi 1622909575 458 LSQELESLKgRIKELEAIESRLEKT 482
Cdd:pfam17380 571 MEREREMMR-QIVESEKARAEYEAT 594
|
|
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