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Conserved domains on  [gi|1002298057|ref|XP_015612446|]
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protein Brevis radix-like 1 [Oryza sativa Japonica Group]

Protein Classification

BRX_N and BRX domain-containing protein( domain architecture ID 10616710)

BRX_N and BRX domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
BRX pfam08381
Transcription factor regulating root and shoot growth via Pin3; The BREVIS RADIX (BRX) domain ...
 367-422 4.85e-32

Transcription factor regulating root and shoot growth via Pin3; The BREVIS RADIX (BRX) domain was characterized as being a transcription factor in plants regulating the extent of cell proliferation and elongation in the growth zone of the root. BRX is rate limiting for auxin-responsive gene-expression by mediating cross-talk with the brassino-steroid pathway. BRX has a ubiquitous, although quantitatively variable role in modulating the growth rate in both the root and the shoot. The family features a short region of alpha-helix, approximately 60 residues in length, which is found repeated up to three times. BRX is expressed in the vasculature and is rate-limiting for transcriptional auxin action.


:

Pssm-ID: 429960 [Multi-domain]  Cd Length: 56  Bit Score: 115.76  E-value: 4.85e-32
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1002298057 367 EREWVEEDEPGVYITIRALPGGIRELRRVRFSRERFSEMHARLWWEENRARIHEQY 422
Cdd:pfam08381   1 EREWVEQDEPGVYITLVILPDGTKELKRVRFSRRRFSEKQAEVWWEENRDRVYEKY 56
BRX pfam08381
Transcription factor regulating root and shoot growth via Pin3; The BREVIS RADIX (BRX) domain ...
 178-233 1.97e-28

Transcription factor regulating root and shoot growth via Pin3; The BREVIS RADIX (BRX) domain was characterized as being a transcription factor in plants regulating the extent of cell proliferation and elongation in the growth zone of the root. BRX is rate limiting for auxin-responsive gene-expression by mediating cross-talk with the brassino-steroid pathway. BRX has a ubiquitous, although quantitatively variable role in modulating the growth rate in both the root and the shoot. The family features a short region of alpha-helix, approximately 60 residues in length, which is found repeated up to three times. BRX is expressed in the vasculature and is rate-limiting for transcriptional auxin action.


:

Pssm-ID: 429960 [Multi-domain]  Cd Length: 56  Bit Score: 106.13  E-value: 1.97e-28
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1002298057 178 AKEWVAQVEPGVLITFVSLPQGGNDLKRIRFSREMFNKWQAQRWWAENYDKVMELY 233
Cdd:pfam08381   1 EREWVEQDEPGVYITLVILPDGTKELKRVRFSRRRFSEKQAEVWWEENRDRVYEKY 56
BRX_N pfam13713
Transcription factor BRX N-terminal domain; The BREVIS RADIX (BRX) domain was characterized as ...
 39-70 6.72e-10

Transcription factor BRX N-terminal domain; The BREVIS RADIX (BRX) domain was characterized as being a transcription factor in plants regulating the extent of cell proliferation and elongation in the growth zone of the root. BRX is rate limiting for auxin-responsive gene-expression by mediating cross-talk with the brassino-steroid pathway. BRX has a ubiquitous, although quantitatively variable role in modulating the growth rate in both the root and the shoot. This family features a short region, also alpha-helical, N-terminal to the repeated alpha-helices of family BRX, pfam08381. BRX is expressed in the vasculature and is rate-limiting for transcriptional auxin action.


:

Pssm-ID: 404581  Cd Length: 37  Bit Score: 53.81  E-value: 6.72e-10
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1002298057  39 TPSTRLAIKALTAQIKDIALKASGAYRHCKPC 70
Cdd:pfam13713   6 TKAAKEVIKSLTAQLKDMAEKLPGAYRDCKPC 37
 
Name Accession Description Interval E-value
BRX pfam08381
Transcription factor regulating root and shoot growth via Pin3; The BREVIS RADIX (BRX) domain ...
 367-422 4.85e-32

Transcription factor regulating root and shoot growth via Pin3; The BREVIS RADIX (BRX) domain was characterized as being a transcription factor in plants regulating the extent of cell proliferation and elongation in the growth zone of the root. BRX is rate limiting for auxin-responsive gene-expression by mediating cross-talk with the brassino-steroid pathway. BRX has a ubiquitous, although quantitatively variable role in modulating the growth rate in both the root and the shoot. The family features a short region of alpha-helix, approximately 60 residues in length, which is found repeated up to three times. BRX is expressed in the vasculature and is rate-limiting for transcriptional auxin action.


Pssm-ID: 429960 [Multi-domain]  Cd Length: 56  Bit Score: 115.76  E-value: 4.85e-32
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1002298057 367 EREWVEEDEPGVYITIRALPGGIRELRRVRFSRERFSEMHARLWWEENRARIHEQY 422
Cdd:pfam08381   1 EREWVEQDEPGVYITLVILPDGTKELKRVRFSRRRFSEKQAEVWWEENRDRVYEKY 56
BRX pfam08381
Transcription factor regulating root and shoot growth via Pin3; The BREVIS RADIX (BRX) domain ...
 178-233 1.97e-28

Transcription factor regulating root and shoot growth via Pin3; The BREVIS RADIX (BRX) domain was characterized as being a transcription factor in plants regulating the extent of cell proliferation and elongation in the growth zone of the root. BRX is rate limiting for auxin-responsive gene-expression by mediating cross-talk with the brassino-steroid pathway. BRX has a ubiquitous, although quantitatively variable role in modulating the growth rate in both the root and the shoot. The family features a short region of alpha-helix, approximately 60 residues in length, which is found repeated up to three times. BRX is expressed in the vasculature and is rate-limiting for transcriptional auxin action.


Pssm-ID: 429960 [Multi-domain]  Cd Length: 56  Bit Score: 106.13  E-value: 1.97e-28
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1002298057 178 AKEWVAQVEPGVLITFVSLPQGGNDLKRIRFSREMFNKWQAQRWWAENYDKVMELY 233
Cdd:pfam08381   1 EREWVEQDEPGVYITLVILPDGTKELKRVRFSRRRFSEKQAEVWWEENRDRVYEKY 56
BRX_N pfam13713
Transcription factor BRX N-terminal domain; The BREVIS RADIX (BRX) domain was characterized as ...
 39-70 6.72e-10

Transcription factor BRX N-terminal domain; The BREVIS RADIX (BRX) domain was characterized as being a transcription factor in plants regulating the extent of cell proliferation and elongation in the growth zone of the root. BRX is rate limiting for auxin-responsive gene-expression by mediating cross-talk with the brassino-steroid pathway. BRX has a ubiquitous, although quantitatively variable role in modulating the growth rate in both the root and the shoot. This family features a short region, also alpha-helical, N-terminal to the repeated alpha-helices of family BRX, pfam08381. BRX is expressed in the vasculature and is rate-limiting for transcriptional auxin action.


Pssm-ID: 404581  Cd Length: 37  Bit Score: 53.81  E-value: 6.72e-10
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1002298057  39 TPSTRLAIKALTAQIKDIALKASGAYRHCKPC 70
Cdd:pfam13713   6 TKAAKEVIKSLTAQLKDMAEKLPGAYRDCKPC 37
 
Name Accession Description Interval E-value
BRX pfam08381
Transcription factor regulating root and shoot growth via Pin3; The BREVIS RADIX (BRX) domain ...
 367-422 4.85e-32

Transcription factor regulating root and shoot growth via Pin3; The BREVIS RADIX (BRX) domain was characterized as being a transcription factor in plants regulating the extent of cell proliferation and elongation in the growth zone of the root. BRX is rate limiting for auxin-responsive gene-expression by mediating cross-talk with the brassino-steroid pathway. BRX has a ubiquitous, although quantitatively variable role in modulating the growth rate in both the root and the shoot. The family features a short region of alpha-helix, approximately 60 residues in length, which is found repeated up to three times. BRX is expressed in the vasculature and is rate-limiting for transcriptional auxin action.


Pssm-ID: 429960 [Multi-domain]  Cd Length: 56  Bit Score: 115.76  E-value: 4.85e-32
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1002298057 367 EREWVEEDEPGVYITIRALPGGIRELRRVRFSRERFSEMHARLWWEENRARIHEQY 422
Cdd:pfam08381   1 EREWVEQDEPGVYITLVILPDGTKELKRVRFSRRRFSEKQAEVWWEENRDRVYEKY 56
BRX pfam08381
Transcription factor regulating root and shoot growth via Pin3; The BREVIS RADIX (BRX) domain ...
 178-233 1.97e-28

Transcription factor regulating root and shoot growth via Pin3; The BREVIS RADIX (BRX) domain was characterized as being a transcription factor in plants regulating the extent of cell proliferation and elongation in the growth zone of the root. BRX is rate limiting for auxin-responsive gene-expression by mediating cross-talk with the brassino-steroid pathway. BRX has a ubiquitous, although quantitatively variable role in modulating the growth rate in both the root and the shoot. The family features a short region of alpha-helix, approximately 60 residues in length, which is found repeated up to three times. BRX is expressed in the vasculature and is rate-limiting for transcriptional auxin action.


Pssm-ID: 429960 [Multi-domain]  Cd Length: 56  Bit Score: 106.13  E-value: 1.97e-28
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1002298057 178 AKEWVAQVEPGVLITFVSLPQGGNDLKRIRFSREMFNKWQAQRWWAENYDKVMELY 233
Cdd:pfam08381   1 EREWVEQDEPGVYITLVILPDGTKELKRVRFSRRRFSEKQAEVWWEENRDRVYEKY 56
BRX_N pfam13713
Transcription factor BRX N-terminal domain; The BREVIS RADIX (BRX) domain was characterized as ...
 39-70 6.72e-10

Transcription factor BRX N-terminal domain; The BREVIS RADIX (BRX) domain was characterized as being a transcription factor in plants regulating the extent of cell proliferation and elongation in the growth zone of the root. BRX is rate limiting for auxin-responsive gene-expression by mediating cross-talk with the brassino-steroid pathway. BRX has a ubiquitous, although quantitatively variable role in modulating the growth rate in both the root and the shoot. This family features a short region, also alpha-helical, N-terminal to the repeated alpha-helices of family BRX, pfam08381. BRX is expressed in the vasculature and is rate-limiting for transcriptional auxin action.


Pssm-ID: 404581  Cd Length: 37  Bit Score: 53.81  E-value: 6.72e-10
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1002298057  39 TPSTRLAIKALTAQIKDIALKASGAYRHCKPC 70
Cdd:pfam13713   6 TKAAKEVIKSLTAQLKDMAEKLPGAYRDCKPC 37
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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