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Conserved domains on  [gi|1002298925|ref|XP_015612875|]
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thylakoid lumenal 17.4 kDa protein, chloroplastic [Oryza sativa Japonica Group]

Protein Classification

pentapeptide repeat-containing protein( domain architecture ID 11442852)

pentapeptide repeat-containing protein (PRP) adopts a beta-helical structure and may have a targeting or structural function

CATH:  2.160.20.10
PubMed:  33925937|9655353

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
134-219 2.56e-11

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


:

Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 60.34  E-value: 2.56e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002298925 134 ALMSDSKFDGADMSEVVMSKAYAVGASFKGTDFTNAVIDRVNFEKADLQGAIFRNTVLSGSTFDDAKMQDVVFEDTIIGY 213
Cdd:COG1357    87 ANLSGANLSGANLSGANLRGANLSGANLSGADLSGADLSGANLSGADLSGANLSGANLSGADLSGADLSGANLSGANLSG 166


                  ....*.
gi 1002298925 214 IDLQKL 219
Cdd:COG1357   167 ANLANL 172
 
Name Accession Description Interval E-value
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
134-219 2.56e-11

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 60.34  E-value: 2.56e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002298925 134 ALMSDSKFDGADMSEVVMSKAYAVGASFKGTDFTNAVIDRVNFEKADLQGAIFRNTVLSGSTFDDAKMQDVVFEDTIIGY 213
Cdd:COG1357    87 ANLSGANLSGANLSGANLRGANLSGANLSGADLSGADLSGANLSGADLSGANLSGANLSGADLSGADLSGANLSGANLSG 166


                  ....*.
gi 1002298925 214 IDLQKL 219
Cdd:COG1357   167 ANLANL 172
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 144-188 5.06e-06

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 42.33  E-value: 5.06e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1002298925 144 ADMSEVVMSKAYAVGASFKGTDFTNAvidrvNFEKADLQGAIFRN 188
Cdd:pfam00805   1 ANLSGANLSGANLSGANLSGANLTGA-----NLSGADLSGANLSG 40
PRK15196 PRK15196
type III secretion system effector PipB2;
112-201 1.33e-05

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 45.38  E-value: 1.33e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002298925 112 LDLRFCDYTNEKTNLKGKSLAAALMSDSKFDGADMSEVVMSKAYAVGASFKGTDFTNAVIDRVNFEKADLQGAIFRNTVL 191
Cdd:PRK15196  245 IECNCSGANMDHTNLSGATLIRADMSGATLQGATIMAAIMEGAVLTRANLRKASFISTNLDGADLAEANLNNTCFKDCTL 324

                          90
                  ....*....|
gi 1002298925 192 SGSTFDDAKM 201
Cdd:PRK15196  325 THLRTEDATM 334
 
Name Accession Description Interval E-value
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
134-219 2.56e-11

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 60.34  E-value: 2.56e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002298925 134 ALMSDSKFDGADMSEVVMSKAYAVGASFKGTDFTNAVIDRVNFEKADLQGAIFRNTVLSGSTFDDAKMQDVVFEDTIIGY 213
Cdd:COG1357    87 ANLSGANLSGANLSGANLRGANLSGANLSGADLSGADLSGANLSGADLSGANLSGANLSGADLSGADLSGANLSGANLSG 166


                  ....*.
gi 1002298925 214 IDLQKL 219
Cdd:COG1357   167 ANLANL 172
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
125-209 1.36e-10

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 58.41  E-value: 1.36e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002298925 125 NLKGKSLAAALMSDSKFDGADMSEVVMSKAYAvGASFKGTDFTNAVIDRVNFEKADLQGAIFRNTVLSGSTFDDAKMQDV 204
Cdd:COG1357     1 DLSGADLSGADLSGADLSGADLSGANLSGALS-GANLSGANLSGANLTGANLSGADLSGADLSGANLSGADLSGANLTGA 79


                  ....*
gi 1002298925 205 VFEDT 209
Cdd:COG1357    80 DLSGA 84
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
113-217 4.31e-09

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 54.18  E-value: 4.31e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002298925 113 DLRFCDYTN---EKTNLKGKSLAAALMSDSkFDGADMSEVVMSKAYAVGASFKGTDFTNAVIDRVNFEKADLQGAIFRNT 189
Cdd:COG1357     1 DLSGADLSGadlSGADLSGADLSGANLSGA-LSGANLSGANLSGANLTGANLSGADLSGADLSGANLSGADLSGANLTGA 79

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1002298925 190 VLSGS---TFDDAKMQDVVFEDTIIGYIDLQ 217
Cdd:COG1357    80 DLSGAnlaNLSGANLSGANLSGANLRGANLS 110
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 144-188 5.06e-06

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 42.33  E-value: 5.06e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1002298925 144 ADMSEVVMSKAYAVGASFKGTDFTNAvidrvNFEKADLQGAIFRN 188
Cdd:pfam00805   1 ANLSGANLSGANLSGANLSGANLTGA-----NLSGADLSGANLSG 40
PRK15196 PRK15196
type III secretion system effector PipB2;
112-201 1.33e-05

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 45.38  E-value: 1.33e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002298925 112 LDLRFCDYTNEKTNLKGKSLAAALMSDSKFDGADMSEVVMSKAYAVGASFKGTDFTNAVIDRVNFEKADLQGAIFRNTVL 191
Cdd:PRK15196  245 IECNCSGANMDHTNLSGATLIRADMSGATLQGATIMAAIMEGAVLTRANLRKASFISTNLDGADLAEANLNNTCFKDCTL 324

                          90
                  ....*....|
gi 1002298925 192 SGSTFDDAKM 201
Cdd:PRK15196  325 THLRTEDATM 334
Pentapeptide_4 pfam13599
Pentapeptide repeats (9 copies);
159-217 2.24e-05

Pentapeptide repeats (9 copies);


Pssm-ID: 433339 [Multi-domain]  Cd Length: 78  Bit Score: 41.49  E-value: 2.24e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1002298925 159 ASFKGTDFTNAVIDRVNFEKADLQGAIFRNTVLSGSTFDDAKMQDVVFEDTIIGYIDLQ 217
Cdd:pfam13599   1 ADFTRCSFEGCKLSGTEFYHATLKDCNFTECNLVNVNFDDCNLRDVDFLEAQLKNAQFS 59
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 159-198 2.57e-05

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 40.40  E-value: 2.57e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1002298925 159 ASFKGTDFTNAVIDRVNFEKADLQGAIFRNTVLSGSTFDD 198
Cdd:pfam00805   1 ANLSGANLSGANLSGANLSGANLTGANLSGADLSGANLSG 40
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 173-208 8.80e-05

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 38.86  E-value: 8.80e-05
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1002298925 173 RVNFEKADLQGAIFRNTVLSGSTFDDAKMQDVVFED 208
Cdd:pfam00805   5 GANLSGANLSGANLSGANLTGANLSGADLSGANLSG 40
Pentapeptide_4 pfam13599
Pentapeptide repeats (9 copies);
139-206 1.08e-04

Pentapeptide repeats (9 copies);


Pssm-ID: 433339 [Multi-domain]  Cd Length: 78  Bit Score: 39.56  E-value: 1.08e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1002298925 139 SKFDGADMSEVVMSKAYAVGASFKGTDFTNAVIDRVNFEKADLQGAIFRNTVLSGSTFDDAKMQDVVF 206
Cdd:pfam13599  11 CKLSGTEFYHATLKDCNFTECNLVNVNFDDCNLRDVDFLEAQLKNAQFSGCNLKNSNFSDVKLKGADF 78
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 158-193 1.33e-04

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 38.09  E-value: 1.33e-04
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1002298925 158 GASFKGTDFTNAVIDRVNFEKADLQGAIFRNTVLSG 193
Cdd:pfam00805   5 GANLSGANLSGANLSGANLTGANLSGADLSGANLSG 40
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
145-218 2.01e-04

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 40.69  E-value: 2.01e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1002298925 145 DMSEVVMSKAYAVGASFKGTDFTNAVIDRVnFEKADLQGAIFRNTVLSGSTFDDAKMQDVVFEDTIIGYIDLQK 218
Cdd:COG1357     1 DLSGADLSGADLSGADLSGADLSGANLSGA-LSGANLSGANLSGANLTGANLSGADLSGADLSGANLSGADLSG 73
Pentapeptide_4 pfam13599
Pentapeptide repeats (9 copies);
158-209 2.39e-04

Pentapeptide repeats (9 copies);


Pssm-ID: 433339 [Multi-domain]  Cd Length: 78  Bit Score: 38.79  E-value: 2.39e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1002298925 158 GASFKGTDFTNAVIDRVNFEKADLQGAIFRNTVLSGSTFDDAKMQDVVFEDT 209
Cdd:pfam13599  10 GCKLSGTEFYHATLKDCNFTECNLVNVNFDDCNLRDVDFLEAQLKNAQFSGC 61
PRK15196 PRK15196
type III secretion system effector PipB2;
125-209 2.89e-04

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 41.15  E-value: 2.89e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002298925 125 NLKGKSLAAALMSDSKFDGADMSEVVMSKAYAVGASFKGTDFTNAVIDRVNFEKADLQGAIFRNTVLSGSTFDDAKMQDV 204
Cdd:PRK15196  248 NCSGANMDHTNLSGATLIRADMSGATLQGATIMAAIMEGAVLTRANLRKASFISTNLDGADLAEANLNNTCFKDCTLTHL 327


                  ....*
gi 1002298925 205 VFEDT 209
Cdd:PRK15196  328 RTEDA 332
PRK15196 PRK15196
type III secretion system effector PipB2;
98-224 3.11e-04

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 41.15  E-value: 3.11e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002298925  98 GNTIGQANGVYDKPLDLRFCDYTNEKTNLKG-----KSLAAALMSDSKFDGADMSEVVMSKAYAVGASFKGTDFTNAVID 172
Cdd:PRK15196  201 GTSLGDSNFKNACLEDSIMCGATLDHANLTGanlqhASLLGCSMIECNCSGANMDHTNLSGATLIRADMSGATLQGATIM 280

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1002298925 173 RVNFE-----KADLQGAIFRNTVLSGSTFDDAKMQDVVFEDTIIGYIDLQKLCTNTS 224
Cdd:PRK15196  281 AAIMEgavltRANLRKASFISTNLDGADLAEANLNNTCFKDCTLTHLRTEDATMSTS 337
Pentapeptide_4 pfam13599
Pentapeptide repeats (9 copies);
136-216 3.87e-04

Pentapeptide repeats (9 copies);


Pssm-ID: 433339 [Multi-domain]  Cd Length: 78  Bit Score: 38.02  E-value: 3.87e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002298925 136 MSDSKFDGADMSEVVMSKAYavgasFKGTDFTNAVIDRVNFEKADLQGAIFRNTVLSGSTFDDAKMQDVVFEDTIIGYID 215
Cdd:pfam13599   3 FTRCSFEGCKLSGTEFYHAT-----LKDCNFTECNLVNVNFDDCNLRDVDFLEAQLKNAQFSGCNLKNSNFSDVKLKGAD 77


                  .
gi 1002298925 216 L 216
Cdd:pfam13599  78 F 78
Pentapeptide_4 pfam13599
Pentapeptide repeats (9 copies);
117-196 1.62e-03

Pentapeptide repeats (9 copies);


Pssm-ID: 433339 [Multi-domain]  Cd Length: 78  Bit Score: 36.48  E-value: 1.62e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002298925 117 CDYTN---EKTNLKGKSLAAALMSDSKFDGADMSEVVMSKAYavgasFKGTDFTNAVIDRVNFEKADLQGAIFRNTVLSG 193
Cdd:pfam13599   1 ADFTRcsfEGCKLSGTEFYHATLKDCNFTECNLVNVNFDDCN-----LRDVDFLEAQLKNAQFSGCNLKNSNFSDVKLKG 75


                  ...
gi 1002298925 194 STF 196
Cdd:pfam13599  76 ADF 78
PRK15196 PRK15196
type III secretion system effector PipB2;
126-201 1.94e-03

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 38.83  E-value: 1.94e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1002298925 126 LKGKSLAAALMSDSKFDGADMSEVVMSKAYAVGASFKGTDFTNAVIDRVNFEKADLQgaifrNTVLSGSTFDDAKM 201
Cdd:PRK15196  159 LTGANLTAENLCDADLSGANLEGAVLFMADCEGANFKGANLSGTSLGDSNFKNACLE-----DSIMCGATLDHANL 229
PRK15196 PRK15196
type III secretion system effector PipB2;
122-211 2.50e-03

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 38.45  E-value: 2.50e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002298925 122 EKTNLKGKSLAAALMSDSKFDGADMSEVVMSKAYAVGASFKGTDFTNAVIDRVNFEKADLQGAIFRNTVLSGSTFDDAKM 201
Cdd:PRK15196  190 EGANFKGANLSGTSLGDSNFKNACLEDSIMCGATLDHANLTGANLQHASLLGCSMIECNCSGANMDHTNLSGATLIRADM 269

                          90
                  ....*....|
gi 1002298925 202 QDVVFEDTII 211
Cdd:PRK15196  270 SGATLQGATI 279
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 130-168 9.03e-03

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 33.08  E-value: 9.03e-03
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1002298925 130 SLAAALMSDSKFDGADMSEVVMSKAYAVGASFKGTDFTN 168
Cdd:pfam00805   2 NLSGANLSGANLSGANLSGANLTGANLSGADLSGANLSG 40
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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