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Conserved domains on  [gi|1002302420|ref|XP_015614595|]
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uncharacterized protein [Oryza sativa Japonica Group]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03200 super family cl33659
cellulose synthase-interactive protein; Provisional
 170-303 5.48e-06

cellulose synthase-interactive protein; Provisional


The actual alignment was detected with superfamily member PLN03200:

Pssm-ID: 215629 [Multi-domain]  Cd Length: 2102  Bit Score: 50.10  E-value: 5.48e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302420  170 LHTGGLAARADSAANLASLARDSQHFAKLIIEEDGVPPLLRLLKEGTDDGQEAAARALGLLgcddesIDKLVQAGVCSVF 249
Cdd:PLN03200   497 LETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKL------VRTADAATISQLT 570

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1002302420  250 AAALKDPPmRVQAAVADAIG---TLADRSATCQELFAQNNAVRYLVGHLASGT--IQEH 303
Cdd:PLN03200   571 ALLLGDLP-ESKVHVLDVLGhvlSVASLEDLVREGSAANDALRTLIQLLSSSKeeTQEK 628
 
Name Accession Description Interval E-value
PLN03200 PLN03200
cellulose synthase-interactive protein; Provisional
 170-303 5.48e-06

cellulose synthase-interactive protein; Provisional


Pssm-ID: 215629 [Multi-domain]  Cd Length: 2102  Bit Score: 50.10  E-value: 5.48e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302420  170 LHTGGLAARADSAANLASLARDSQHFAKLIIEEDGVPPLLRLLKEGTDDGQEAAARALGLLgcddesIDKLVQAGVCSVF 249
Cdd:PLN03200   497 LETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKL------VRTADAATISQLT 570

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1002302420  250 AAALKDPPmRVQAAVADAIG---TLADRSATCQELFAQNNAVRYLVGHLASGT--IQEH 303
Cdd:PLN03200   571 ALLLGDLP-ESKVHVLDVLGhvlSVASLEDLVREGSAANDALRTLIQLLSSSKeeTQEK 628
HEAT COG1413
HEAT repeat [General function prediction only];
201-276 6.87e-04

HEAT repeat [General function prediction only];


Pssm-ID: 441023 [Multi-domain]  Cd Length: 137  Bit Score: 40.38  E-value: 6.87e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1002302420 201 EEDGVPPLLRLLKEGTDDGQEAAARALGLLGcDDESIDKLVQagvcsvfaaALKDPPMRVQAAVADAIGTLADRSA 276
Cdd:COG1413    45 DPRAVPALLEALKDPDPEVRAAAAEALGRIG-DPEAVPALIA---------ALKDEDPEVRRAAAEALGRLGDPAA 110
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 192-230 9.10e-04

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 37.43  E-value: 9.10e-04
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1002302420 192 SQHFAKLIIEEDGVPPLLRLLKEGTDDGQEAAARALGLL 230
Cdd:pfam00514   1 SPENKQAVIEAGAVPPLVRLLSSPDEEVQEEAAWALSNL 39
INSC_LBD cd21966
LGN-binding domain (LBD) of protein Inscuteable (INSC) and similar proteins; Inscuteable (INSC) ...
 183-244 4.33e-03

LGN-binding domain (LBD) of protein Inscuteable (INSC) and similar proteins; Inscuteable (INSC) functions as an adapter protein linking the Par polarity complex (composed of Par3, Par6 and protein kinase C iota) to the Gpsm1/Gpsm2 complex, and is involved in cell polarity and spindle orientation during mitosis. Par3 interacts with INSC which binds directly to Pins (partner of Insc, homolog of vertebrate LGN/Gpsm2 and AGS3/Gpsm1). Pins then associates with the heterotrimeric G proteins and NuMA, which interacts directly with the cell spindle to control the orientation of the spindle and the division plane of mitotic cells. INSC may regulate cell proliferation and differentiation in the developing nervous system, may play a role in the asymmetric division of fibroblasts, and may also participate in the process of stratification of the squamous epithelium. This model corresponds to the Leu-Gly-Asn Repeat-Enriched Protein (LGN)-binding domain (LBD) of INSC. It interacts with the tetratricopeptide repeat (TPR) motifs of LGN, also called G-protein-signaling modulator 2 (Gpsm2).


Pssm-ID: 439320 [Multi-domain]  Cd Length: 300  Bit Score: 39.55  E-value: 4.33e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1002302420 183 ANLASLARDSQHFAKLIIEEDGVPPLLRLLKEGTDDGQEAAA-RALGLLGCDDESIDKLVQAG 244
Cdd:cd21966   181 SALTSLGLEGPHLCRLIAKEGGVRALLIVCRDCKSSSVRALAlRALATVCCVPEAIRQFEKAG 243
 
Name Accession Description Interval E-value
PLN03200 PLN03200
cellulose synthase-interactive protein; Provisional
 170-303 5.48e-06

cellulose synthase-interactive protein; Provisional


Pssm-ID: 215629 [Multi-domain]  Cd Length: 2102  Bit Score: 50.10  E-value: 5.48e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302420  170 LHTGGLAARADSAANLASLARDSQHFAKLIIEEDGVPPLLRLLKEGTDDGQEAAARALGLLgcddesIDKLVQAGVCSVF 249
Cdd:PLN03200   497 LETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKL------VRTADAATISQLT 570

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1002302420  250 AAALKDPPmRVQAAVADAIG---TLADRSATCQELFAQNNAVRYLVGHLASGT--IQEH 303
Cdd:PLN03200   571 ALLLGDLP-ESKVHVLDVLGhvlSVASLEDLVREGSAANDALRTLIQLLSSSKeeTQEK 628
PLN03200 PLN03200
cellulose synthase-interactive protein; Provisional
 167-227 1.03e-04

cellulose synthase-interactive protein; Provisional


Pssm-ID: 215629 [Multi-domain]  Cd Length: 2102  Bit Score: 45.86  E-value: 1.03e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1002302420  167 VARLHTGGLAARADSAANLASLARDSQHFAKLIIeedG--VPPLLRLLKEGTDDGQEAAARAL 227
Cdd:PLN03200    64 VSLLRSGTLGAKVNAAAVLGVLCKEEDLRVKVLL---GgcIPPLLSLLKSGSAEAQKAAAEAI 123
HEAT COG1413
HEAT repeat [General function prediction only];
201-276 6.87e-04

HEAT repeat [General function prediction only];


Pssm-ID: 441023 [Multi-domain]  Cd Length: 137  Bit Score: 40.38  E-value: 6.87e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1002302420 201 EEDGVPPLLRLLKEGTDDGQEAAARALGLLGcDDESIDKLVQagvcsvfaaALKDPPMRVQAAVADAIGTLADRSA 276
Cdd:COG1413    45 DPRAVPALLEALKDPDPEVRAAAAEALGRIG-DPEAVPALIA---------ALKDEDPEVRRAAAEALGRLGDPAA 110
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 192-230 9.10e-04

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 37.43  E-value: 9.10e-04
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1002302420 192 SQHFAKLIIEEDGVPPLLRLLKEGTDDGQEAAARALGLL 230
Cdd:pfam00514   1 SPENKQAVIEAGAVPPLVRLLSSPDEEVQEEAAWALSNL 39
HEAT COG1413
HEAT repeat [General function prediction only];
201-276 1.99e-03

HEAT repeat [General function prediction only];


Pssm-ID: 441023 [Multi-domain]  Cd Length: 137  Bit Score: 38.84  E-value: 1.99e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1002302420 201 EEDGVPPLLRLLKEGTDDGQEAAARALGLLGcDDESIDKLVQagvcsvfaaALKDPPMRVQAAVADAIGTLADRSA 276
Cdd:COG1413    14 DPAAVPALIAALADEDPDVRAAAARALGRLG-DPRAVPALLE---------ALKDPDPEVRAAAAEALGRIGDPEA 79
INSC_LBD cd21966
LGN-binding domain (LBD) of protein Inscuteable (INSC) and similar proteins; Inscuteable (INSC) ...
 183-244 4.33e-03

LGN-binding domain (LBD) of protein Inscuteable (INSC) and similar proteins; Inscuteable (INSC) functions as an adapter protein linking the Par polarity complex (composed of Par3, Par6 and protein kinase C iota) to the Gpsm1/Gpsm2 complex, and is involved in cell polarity and spindle orientation during mitosis. Par3 interacts with INSC which binds directly to Pins (partner of Insc, homolog of vertebrate LGN/Gpsm2 and AGS3/Gpsm1). Pins then associates with the heterotrimeric G proteins and NuMA, which interacts directly with the cell spindle to control the orientation of the spindle and the division plane of mitotic cells. INSC may regulate cell proliferation and differentiation in the developing nervous system, may play a role in the asymmetric division of fibroblasts, and may also participate in the process of stratification of the squamous epithelium. This model corresponds to the Leu-Gly-Asn Repeat-Enriched Protein (LGN)-binding domain (LBD) of INSC. It interacts with the tetratricopeptide repeat (TPR) motifs of LGN, also called G-protein-signaling modulator 2 (Gpsm2).


Pssm-ID: 439320 [Multi-domain]  Cd Length: 300  Bit Score: 39.55  E-value: 4.33e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1002302420 183 ANLASLARDSQHFAKLIIEEDGVPPLLRLLKEGTDDGQEAAA-RALGLLGCDDESIDKLVQAG 244
Cdd:cd21966   181 SALTSLGLEGPHLCRLIAKEGGVRALLIVCRDCKSSSVRALAlRALATVCCVPEAIRQFEKAG 243
HEAT COG1413
HEAT repeat [General function prediction only];
199-272 6.62e-03

HEAT repeat [General function prediction only];


Pssm-ID: 441023 [Multi-domain]  Cd Length: 137  Bit Score: 37.30  E-value: 6.62e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1002302420 199 IIEEDGVPPLLRLLKEGTDDGQEAAARALGLLGcDDESIDKLVQagvcsvfaaALKDPPMRVQAAVADAIGTLA 272
Cdd:COG1413    74 IGDPEAVPALIAALKDEDPEVRRAAAEALGRLG-DPAAVPALLE---------ALKDPDWEVRRAAARALGRLG 137
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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