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Conserved domains on  [gi|1002302658|ref|XP_015614708|]
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pentatricopeptide repeat-containing protein MRL1, chloroplastic isoform X2 [Oryza sativa Japonica Group]

Protein Classification

pentatricopeptide repeat-containing protein( domain architecture ID 1000098)

pentatricopeptide repeat (PPR)-containing protein may form anti-parallel alpha helices and bind single-stranded RNA in a sequence-specific and modular manner

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03218 super family cl33664
maturation of RBCL 1; Provisional
 1-735 0e+00

maturation of RBCL 1; Provisional


The actual alignment was detected with superfamily member PLN03218:

Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 1385.75  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658    1 MNDHDDAKLIGWSISNLLSKENPENSTSANRAGLRGTKDVPDYLRRYNSLLIDGRLKDSVDLLESMEQKGLLDMNKIHHA 80
Cdd:PLN03218   331 NNGVKDAELPGQSSGQAASDVEEENSLAAYNGGVSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHA 410

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658   81 SFLNACKKQRAVPEAVRFCKLINNPKMSTFNMLLSVCANSQDFDGALQVMVLLKEAGLKPDCKLYTTLISTCAKCGKVDA 160
Cdd:PLN03218   411 KFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDA 490

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658  161 MFEVFHEMVSAGIEPNVNTYSALIDGCAKAGQVAKAFGAYGIMSSKKVKPDRVVFNALISACGESGAVARAFDVLSEMTA 240
Cdd:PLN03218   491 MFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKA 570

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658  241 EAseskgsKPILPDHVTVGALMKTCIQAGQADRAREVYKMLQEYNIKGTPEVYTIALRSCSLTGDLGFALKIYEDMNKIG 320
Cdd:PLN03218   571 ET------HPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG 644

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658  321 VQPDEMFLSALVDVAGHARRADAAFEIMKDARAKGYQVGTIAYSSLMGACCNAKDWKKALQLFEEIKSIKLMPTVSMMNA 400
Cdd:PLN03218   645 VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNA 724

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658  401 LITALCDGDQVLKSFEVLSEMKRLGVCPNMITYSVLFVACERNAEAQLGLDLFEQLKIDSIDLNPTIVGCLTGLCLQMFD 480
Cdd:PLN03218   725 LITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFE 804

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658  481 NDLSLGNIVVTFNLGKPQIENKWTSSAIKVYREAISTGLLPSSDVLSQVLGCLRFPHDNTLTNTFIENMGISCDIPHHPN 560
Cdd:PLN03218   805 KACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSN 884

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658  561 VNSLLEGFGEYDIRAFSILEEAASLGAVESISMKDTRILVDARKSKIYTAEVSVLTTLRSLKHRLAAGARLPNVTILLPT 640
Cdd:PLN03218   885 LSTLVDGFGEYDPRAFSLLEEAASLGVVPSVSFKKSPIVIDAEELPVFAAEVYLLTILKGLKHRLAAGAKLPNVTILLPT 964

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658  641 EKKQVGLDEREKTLKLAGRVGQAVGSLLRRLGIKYHGEESHGKMRINGLTLRRWFNPKLTSTSStGTPADLLPLPSRLAK 720
Cdd:PLN03218   965 EKKEIYTPKGEKTINLAGRVGQAVAALLRRLGLPYQGSESHGKLRINGLSLRRWFQPKLKSPFS-GKPEDLSSSQSRLGK 1043

                          730
                   ....*....|....*..
gi 1002302658  721 GIADQQRNIR--NLSLE 735
Cdd:PLN03218  1044 GIADQQRAIRlgNLSLE 1060
 
Name Accession Description Interval E-value
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 1-735 0e+00

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 1385.75  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658    1 MNDHDDAKLIGWSISNLLSKENPENSTSANRAGLRGTKDVPDYLRRYNSLLIDGRLKDSVDLLESMEQKGLLDMNKIHHA 80
Cdd:PLN03218   331 NNGVKDAELPGQSSGQAASDVEEENSLAAYNGGVSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHA 410

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658   81 SFLNACKKQRAVPEAVRFCKLINNPKMSTFNMLLSVCANSQDFDGALQVMVLLKEAGLKPDCKLYTTLISTCAKCGKVDA 160
Cdd:PLN03218   411 KFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDA 490

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658  161 MFEVFHEMVSAGIEPNVNTYSALIDGCAKAGQVAKAFGAYGIMSSKKVKPDRVVFNALISACGESGAVARAFDVLSEMTA 240
Cdd:PLN03218   491 MFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKA 570

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658  241 EAseskgsKPILPDHVTVGALMKTCIQAGQADRAREVYKMLQEYNIKGTPEVYTIALRSCSLTGDLGFALKIYEDMNKIG 320
Cdd:PLN03218   571 ET------HPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG 644

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658  321 VQPDEMFLSALVDVAGHARRADAAFEIMKDARAKGYQVGTIAYSSLMGACCNAKDWKKALQLFEEIKSIKLMPTVSMMNA 400
Cdd:PLN03218   645 VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNA 724

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658  401 LITALCDGDQVLKSFEVLSEMKRLGVCPNMITYSVLFVACERNAEAQLGLDLFEQLKIDSIDLNPTIVGCLTGLCLQMFD 480
Cdd:PLN03218   725 LITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFE 804

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658  481 NDLSLGNIVVTFNLGKPQIENKWTSSAIKVYREAISTGLLPSSDVLSQVLGCLRFPHDNTLTNTFIENMGISCDIPHHPN 560
Cdd:PLN03218   805 KACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSN 884

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658  561 VNSLLEGFGEYDIRAFSILEEAASLGAVESISMKDTRILVDARKSKIYTAEVSVLTTLRSLKHRLAAGARLPNVTILLPT 640
Cdd:PLN03218   885 LSTLVDGFGEYDPRAFSLLEEAASLGVVPSVSFKKSPIVIDAEELPVFAAEVYLLTILKGLKHRLAAGAKLPNVTILLPT 964

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658  641 EKKQVGLDEREKTLKLAGRVGQAVGSLLRRLGIKYHGEESHGKMRINGLTLRRWFNPKLTSTSStGTPADLLPLPSRLAK 720
Cdd:PLN03218   965 EKKEIYTPKGEKTINLAGRVGQAVAALLRRLGLPYQGSESHGKLRINGLSLRRWFQPKLKSPFS-GKPEDLSSSQSRLGK 1043

                          730
                   ....*....|....*..
gi 1002302658  721 GIADQQRNIR--NLSLE 735
Cdd:PLN03218  1044 GIADQQRAIRlgNLSLE 1060
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 184-348 1.13e-14

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 73.58  E-value: 1.13e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658 184 IDGCAKAGQVAKAFGAYGIMSSKKVKPDRVVFNALISACGESG---------AVARAFDVLSEMTAEASEskgskpilPD 254
Cdd:pfam17177  18 LDKCSKHADATGALALYDAAKAEGVRLAQYHYNVLLYLCSKAAdatdlkpqlAADRGFEVFEAMKAQGVS--------PN 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658 255 HVTVGALMKTCIQAGQADRAREVYKMLQEYNIKGTPEVYTIALRSCSLTGDLGFALKIYEDMNKIGVQPDEMFLSALVDV 334
Cdd:pfam17177  90 EATYTAVARLAAAKGDGDLAFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHGVELEEPELAALLKV 169

                         170
                  ....*....|....
gi 1002302658 335 AGHARRADAAFEIM 348
Cdd:pfam17177 170 SAKAGRADKVYAYL 183
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 145-177 2.08e-07

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 47.45  E-value: 2.08e-07
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1002302658 145 YTTLISTCAKCGKVDAMFEVFHEMVSAGIEPNV 177
Cdd:TIGR00756   3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 266-459 1.62e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 44.33  E-value: 1.62e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658 266 IQAGQADRAREVYKMLQEYNIKgTPEVYTIALRSCSLTGDLGFALKIYEDMNKIGvQPDEMFLSALVDVAGHARRADAAF 345
Cdd:COG2956    87 LKAGLLDRAEELLEKLLELDPD-DAEALRLLAEIYEQEGDWEKAIEVLERLLKLG-PENAHAYCELAELYLEQGDYDEAI 164

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658 346 EIMKDARAKgYQVGTIAYSSLMGACCNAKDWKKALQLFEEIksIKLMP-TVSMMNALITALCDGDQVLKSFEVLSEMKRL 424
Cdd:COG2956   165 EALEKALKL-DPDCARALLLLAELYLEQGDYEEAIAALERA--LEQDPdYLPALPRLAELYEKLGDPEEALELLRKALEL 241

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1002302658 425 GVC-PNMITYSVLFVACERNAEAQlgLDLFEQLKID 459
Cdd:COG2956   242 DPSdDLLLALADLLERKEGLEAAL--ALLERQLRRH 275
 
Name Accession Description Interval E-value
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 1-735 0e+00

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 1385.75  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658    1 MNDHDDAKLIGWSISNLLSKENPENSTSANRAGLRGTKDVPDYLRRYNSLLIDGRLKDSVDLLESMEQKGLLDMNKIHHA 80
Cdd:PLN03218   331 NNGVKDAELPGQSSGQAASDVEEENSLAAYNGGVSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHA 410

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658   81 SFLNACKKQRAVPEAVRFCKLINNPKMSTFNMLLSVCANSQDFDGALQVMVLLKEAGLKPDCKLYTTLISTCAKCGKVDA 160
Cdd:PLN03218   411 KFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDA 490

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658  161 MFEVFHEMVSAGIEPNVNTYSALIDGCAKAGQVAKAFGAYGIMSSKKVKPDRVVFNALISACGESGAVARAFDVLSEMTA 240
Cdd:PLN03218   491 MFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKA 570

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658  241 EAseskgsKPILPDHVTVGALMKTCIQAGQADRAREVYKMLQEYNIKGTPEVYTIALRSCSLTGDLGFALKIYEDMNKIG 320
Cdd:PLN03218   571 ET------HPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG 644

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658  321 VQPDEMFLSALVDVAGHARRADAAFEIMKDARAKGYQVGTIAYSSLMGACCNAKDWKKALQLFEEIKSIKLMPTVSMMNA 400
Cdd:PLN03218   645 VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNA 724

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658  401 LITALCDGDQVLKSFEVLSEMKRLGVCPNMITYSVLFVACERNAEAQLGLDLFEQLKIDSIDLNPTIVGCLTGLCLQMFD 480
Cdd:PLN03218   725 LITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFE 804

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658  481 NDLSLGNIVVTFNLGKPQIENKWTSSAIKVYREAISTGLLPSSDVLSQVLGCLRFPHDNTLTNTFIENMGISCDIPHHPN 560
Cdd:PLN03218   805 KACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSN 884

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658  561 VNSLLEGFGEYDIRAFSILEEAASLGAVESISMKDTRILVDARKSKIYTAEVSVLTTLRSLKHRLAAGARLPNVTILLPT 640
Cdd:PLN03218   885 LSTLVDGFGEYDPRAFSLLEEAASLGVVPSVSFKKSPIVIDAEELPVFAAEVYLLTILKGLKHRLAAGAKLPNVTILLPT 964

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658  641 EKKQVGLDEREKTLKLAGRVGQAVGSLLRRLGIKYHGEESHGKMRINGLTLRRWFNPKLTSTSStGTPADLLPLPSRLAK 720
Cdd:PLN03218   965 EKKEIYTPKGEKTINLAGRVGQAVAALLRRLGLPYQGSESHGKLRINGLSLRRWFQPKLKSPFS-GKPEDLSSSQSRLGK 1043

                          730
                   ....*....|....*..
gi 1002302658  721 GIADQQRNIR--NLSLE 735
Cdd:PLN03218  1044 GIADQQRAIRlgNLSLE 1060
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 184-348 1.13e-14

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 73.58  E-value: 1.13e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658 184 IDGCAKAGQVAKAFGAYGIMSSKKVKPDRVVFNALISACGESG---------AVARAFDVLSEMTAEASEskgskpilPD 254
Cdd:pfam17177  18 LDKCSKHADATGALALYDAAKAEGVRLAQYHYNVLLYLCSKAAdatdlkpqlAADRGFEVFEAMKAQGVS--------PN 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658 255 HVTVGALMKTCIQAGQADRAREVYKMLQEYNIKGTPEVYTIALRSCSLTGDLGFALKIYEDMNKIGVQPDEMFLSALVDV 334
Cdd:pfam17177  90 EATYTAVARLAAAKGDGDLAFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHGVELEEPELAALLKV 169

                         170
                  ....*....|....
gi 1002302658 335 AGHARRADAAFEIM 348
Cdd:pfam17177 170 SAKAGRADKVYAYL 183
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 108-284 3.20e-14

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 72.43  E-value: 3.20e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658 108 STFNMLLSVCANSQDFDGALQVMVLLKEAGLKPDCKLYTTLISTCAKCG---------KVDAMFEVFHEMVSAGIEPNVN 178
Cdd:pfam17177  12 SELRFQLDKCSKHADATGALALYDAAKAEGVRLAQYHYNVLLYLCSKAAdatdlkpqlAADRGFEVFEAMKAQGVSPNEA 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658 179 TYSALIDGCAKAGQVAKAFGAYGIMSSKKVKPDRVVFNALISACGESGAVARAFDVLSEMTAEASEskgskpilPDHVTV 258
Cdd:pfam17177  92 TYTAVARLAAAKGDGDLAFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHGVE--------LEEPEL 163

                         170       180
                  ....*....|....*....|....*.
gi 1002302658 259 GALMKTCIQAGQADRareVYKMLQEY 284
Cdd:pfam17177 164 AALLKVSAKAGRADK---VYAYLHRL 186
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 145-189 1.58e-13

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 65.08  E-value: 1.58e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1002302658 145 YTTLISTCAKCGKVDAMFEVFHEMVSAGIEPNVNTYSALIDGCAK 189
Cdd:pfam13041   6 YNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 164-223 1.62e-11

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 60.06  E-value: 1.62e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658 164 VFHEMVSAGIEPNVNTYSALIDGCAKAGQVAKAFGAYGIMSSKKVKPDRVVFNALISACG 223
Cdd:pfam13812   2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIG 61
PLN03077 PLN03077
Protein ECB2; Provisional
 46-459 7.63e-11

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 65.64  E-value: 7.63e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658  46 RYNSLLIDGRLKDSVDLLESMeQKGLLDMNKIHHASFLNACKKQRAVPEAVRFCKLINNpKMSTF-----NMLLSVCANS 120
Cdd:PLN03077   57 QLRALCSHGQLEQALKLLESM-QELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS-SHPSLgvrlgNAMLSMFVRF 134

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658 121 QDFDGALQVMVLLKEAglkpDCKLYTTLISTCAKCGKVDAMFEVFHEMVSAGIEPNVNTY-------------------- 180
Cdd:PLN03077  135 GELVHAWYVFGKMPER----DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFpcvlrtcggipdlargrevh 210

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658 181 ---------------SALIDGCAKAGQVAKAFGAYGIMSSK-------------------------------KVKPDRVV 214
Cdd:PLN03077  211 ahvvrfgfeldvdvvNALITMYVKCGDVVSARLVFDRMPRRdciswnamisgyfengecleglelfftmrelSVDPDLMT 290

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658 215 FNALISACGESG-----------AVARAFDV-------LSEMTAEA-----SESKGSKPILPDHVTVGALMKTCIQAGQA 271
Cdd:PLN03077  291 ITSVISACELLGderlgremhgyVVKTGFAVdvsvcnsLIQMYLSLgswgeAEKVFSRMETKDAVSWTAMISGYEKNGLP 370

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658 272 DRAREVYKMLQEYNIKgtPEVYTIA--LRSCSLTGDLGFALKIYEDMNKIGVQPDEMFLSALVDVAGHARRADAAFEIMK 349
Cdd:PLN03077  371 DKALETYALMEQDNVS--PDEITIAsvLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFH 448

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658 350 DARAKgyqvGTIAYSSLM-GACCNAKDWkKALQLFEEIKsIKLMP-TVSMMNAL-----ITALCDGDQ----VLKS---- 414
Cdd:PLN03077  449 NIPEK----DVISWTSIIaGLRLNNRCF-EALIFFRQML-LTLKPnSVTLIAALsacarIGALMCGKEihahVLRTgigf 522

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658 415 ---------------------------------------------------FEVLSEMKRLGVCPNMITYSVLFVACERN 443
Cdd:PLN03077  523 dgflpnalldlyvrcgrmnyawnqfnshekdvvswnilltgyvahgkgsmaVELFNRMVESGVNPDEVTFISLLCACSRS 602

                         570
                  ....*....|....*.
gi 1002302658 444 AEAQLGLDLFEQLKID 459
Cdd:PLN03077  603 GMVTQGLEYFHSMEEK 618
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 83-456 1.14e-10

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 64.89  E-value: 1.14e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658  83 LNACKKQRAVPEAVRFCKLINNPKM--STFNMLLSVCANSQDFDGALQVMVLLKEAGLKPDCKLYTTLISTCAKCGKVDA 160
Cdd:PLN03081   97 LVACGRHREALELFEILEAGCPFTLpaSTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLID 176

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658 161 MFEVFHEMVsagiEPNVNTYSALIDGCAKAGQVAKAFGAYGIMSSKKVKPDRVVFNALISACGESGAvARAFDVLSEMTA 240
Cdd:PLN03081  177 ARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS-ARAGQQLHCCVL 251

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658 241 EASeskgskpILPDHVTVGALMKTCIQAGQADRAREVYkmlqeyniKGTPEVYTIA----LRSCSLTGDLGFALKIYEDM 316
Cdd:PLN03081  252 KTG-------VVGDTFVSCALIDMYSKCGDIEDARCVF--------DGMPEKTTVAwnsmLAGYALHGYSEEALCLYYEM 316

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658 317 NKIGVQPDEMFLSALVDVAGHArradAAFEIMKDARA----KGYQVGTIAYSSLMGACCNAKDWKKALQLFEEiksiklM 392
Cdd:PLN03081  317 RDSGVSIDQFTFSIMIRIFSRL----ALLEHAKQAHAglirTGFPLDIVANTALVDLYSKWGRMEDARNVFDR------M 386

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1002302658 393 PTVSMM--NALITALCDGDQVLKSFEVLSEMKRLGVCPNMITYSVLFVACERNAEAQLGLDLFEQL 456
Cdd:PLN03081  387 PRKNLIswNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSM 452
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 264-436 1.62e-10

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 61.26  E-value: 1.62e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658 264 TCIQAGQADRAREVYKMLQEYNIKGTPEVYTIALRSCSLTGD---------LGFALKIYEDMNKIGVQPDEMFLSALVDV 334
Cdd:pfam17177  20 KCSKHADATGALALYDAAKAEGVRLAQYHYNVLLYLCSKAADatdlkpqlaADRGFEVFEAMKAQGVSPNEATYTAVARL 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658 335 AGHARRADAAFEIMKDARAKGYQVGTIAYSSLMGACCNAKDWKKALQLFEEIKSIKLMPTVSMMNALITALCDGDQVLKS 414
Cdd:pfam17177 100 AAAKGDGDLAFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHGVELEEPELAALLKVSAKAGRADKV 179

                         170       180
                  ....*....|....*....|..
gi 1002302658 415 FEVLSEMKRLGVCPNMITYSVL 436
Cdd:pfam17177 180 YAYLHRLRDAVRQVSESTAGVL 201
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 91-235 3.61e-10

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 60.49  E-value: 3.61e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658  91 AVPEAVRFCKLInnpkmstFNMLLSVCANSQD---------FDGALQVMVLLKEAGLKPDCKLYTTLISTCAKCGKVDAM 161
Cdd:pfam17177  37 AKAEGVRLAQYH-------YNVLLYLCSKAADatdlkpqlaADRGFEVFEAMKAQGVSPNEATYTAVARLAAAKGDGDLA 109

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1002302658 162 FEVFHEMVSAGIEPNVNTYSALIDGCAKAGQVAKAFGAYGIMSSKKVKPDRVVFNALISACGESGAVARAFDVL 235
Cdd:pfam17177 110 FDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHGVELEEPELAALLKVSAKAGRADKVYAYL 183
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 393-440 3.99e-09

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 52.75  E-value: 3.99e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1002302658 393 PTVSMMNALITALCDGDQVLKSFEVLSEMKRLGVCPNMITYSVLFVAC 440
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 51-387 6.46e-09

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 59.11  E-value: 6.46e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658  51 LID-----GRLKDSVDLLESMEQKGLLDMNKIHHASFLNACKKqravpEAVRFCKLINNPKMS----TFNMLLSVCANSQ 121
Cdd:PLN03081  265 LIDmyskcGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSE-----EALCLYYEMRDSGVSidqfTFSIMIRIFSRLA 339

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658 122 DFDGALQVMVLLKEAGLKPDCKLYTTLISTCAKCGKVDAMFEVFHEMVsagiEPNVNTYSALIDGCAKAGQVAKAFGAYG 201
Cdd:PLN03081  340 LLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFE 415

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658 202 IMSSKKVKPDRVVFNALISACGESGAVARAFDVLSEMTaeasESKGSKPilpdhvtvGALMKTCIQA--GQADRAREVYK 279
Cdd:PLN03081  416 RMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS----ENHRIKP--------RAMHYACMIEllGREGLLDEAYA 483

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658 280 MLQEYNIKGTPEVYTIALRSCSLTGDLGFALKIYEDMnkIGVQPDEM-FLSALVDVAGHARRADAAFEIMKDARAKGY-- 356
Cdd:PLN03081  484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKL--YGMGPEKLnNYVVLLNLYNSSGRQAEAAKVVETLKRKGLsm 561

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 1002302658 357 -------QVGTIAYSSLMGACC---NAKDWKKALQLFEEIK 387
Cdd:PLN03081  562 hpactwiEVKKQDHSFFSGDRLhpqSREIYQKLDELMKEIS 602
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 175-222 7.55e-09

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 51.98  E-value: 7.55e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1002302658 175 PNVNTYSALIDGCAKAGQVAKAFGAYGIMSSKKVKPDRVVFNALISAC 222
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 289-447 9.58e-09

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 56.25  E-value: 9.58e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658 289 TPEV-YTIALRSCSLTGDLGFALKIYEDMNKIGVQPDEMFLSALVDVAGHA---------RRADAAFEIMKDARAKGYQV 358
Cdd:pfam17177   9 TPESeLRFQLDKCSKHADATGALALYDAAKAEGVRLAQYHYNVLLYLCSKAadatdlkpqLAADRGFEVFEAMKAQGVSP 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658 359 GTIAYSSLMGACCNAKDWKKALQLFEEIKSIKLMPTVSMMNALITALCDGDQVLKSFEVLSEMKRLGVCPNMITYSVLFV 438
Cdd:pfam17177  89 NEATYTAVARLAAAKGDGDLAFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHGVELEEPELAALLK 168


                  ....*....
gi 1002302658 439 ACERNAEAQ 447
Cdd:pfam17177 169 VSAKAGRAD 177
PLN03077 PLN03077
Protein ECB2; Provisional
 97-300 3.97e-08

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 56.78  E-value: 3.97e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658  97 RFCKLINNPKMSTFNMLLSVCANSqdfdGAL----QVMVLLKEAGLKPDCKLYTTLISTCAKCGKVDAMFEVFHEMvsag 172
Cdd:PLN03077  479 RQMLLTLKPNSVTLIAALSACARI----GALmcgkEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---- 550

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658 173 iEPNVNTYSALIDGCAKAGQVAKAFGAYGIMSSKKVKPDRVVFNALISACGESGAVARAFDVLSEMTAEASESkgskPIL 252
Cdd:PLN03077  551 -EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT----PNL 625

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1002302658 253 PDHVTVGALMktciqaGQADRAREVYKMLQEYNIKGTPEVYTIALRSC 300
Cdd:PLN03077  626 KHYACVVDLL------GRAGKLTEAYNFINKMPITPDPAVWGALLNAC 667
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 137-189 7.23e-08

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 49.66  E-value: 7.23e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1002302658 137 GLKPDCKLYTTLISTCAKCGKVDAMFEVFHEMVSAGIEPNVNTYSALIDGCAK 189
Cdd:pfam13812  10 GIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGG 62
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 145-177 2.08e-07

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 47.45  E-value: 2.08e-07
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1002302658 145 YTTLISTCAKCGKVDAMFEVFHEMVSAGIEPNV 177
Cdd:TIGR00756   3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 126-446 5.64e-07

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 52.95  E-value: 5.64e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658 126 ALQVMVLLKEAGLKPDCKLYTTLISTCAKCGKVDAMFEVFHEMVSAGIEPNVNTYSALIDGCAKAGQVAKAFGAYGIMSS 205
Cdd:PLN03081  309 ALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR 388

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658 206 KKVkpdrVVFNALISACGESGAVARAFDVLSEMTAEAseskgskpILPDHVTVGALMKTCIQAGQADRAREVYKMLQEYN 285
Cdd:PLN03081  389 KNL----ISWNALIAGYGNHGRGTKAVEMFERMIAEG--------VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENH 456

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658 286 ikgtpevytialrscsltgdlgfalkiyedmnkiGVQPDEMFLSALVDVAGHARRADAAFEIMKDArakgyqvgtiayss 365
Cdd:PLN03081  457 ----------------------------------RIKPRAMHYACMIELLGREGLLDEAYAMIRRA-------------- 488

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658 366 lmgaccnakdwkkalqlfeeiksiKLMPTVSMMNALITAlcdgDQVLKSFEV--LSEMKRLGVCPNMI-TYSVL---FVA 439
Cdd:PLN03081  489 ------------------------PFKPTVNMWAALLTA----CRIHKNLELgrLAAEKLYGMGPEKLnNYVVLlnlYNS 540


                  ....*..
gi 1002302658 440 CERNAEA 446
Cdd:PLN03081  541 SGRQAEA 547
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 359-407 2.16e-06

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 45.05  E-value: 2.16e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1002302658 359 GTIAYSSLMGACCNAKDWKKALQLFEEIKSIKLMPTVSMMNALITALCD 407
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 131-387 4.41e-06

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 50.25  E-value: 4.41e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658 131 VLLKEAGLKPDCKLYTTlISTCAKCGKVDAMFEVFhEMVSAG--IEPNVNTYSALIDGCAKAGQVAKAFGAYGIMSSKKV 208
Cdd:PLN03081   77 RLDDTQIRKSGVSLCSQ-IEKLVACGRHREALELF-EILEAGcpFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGF 154

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658 209 KPDRVVFNALISACGESGAVARAFDVLSEMTAEaseskgskpilpDHVTVGALMKTCIQAGQADRAREVYKMLQEYNIKG 288
Cdd:PLN03081  155 EPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER------------NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDA 222

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658 289 TPEVYTIALRSCSLTGDLGFALKIYEDMNKIGVQPDEMFLSALVDV---AGHARRADAAFEIMKDArakgyqvGTIAYSS 365
Cdd:PLN03081  223 EPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMyskCGDIEDARCVFDGMPEK-------TTVAWNS 295

                         250       260
                  ....*....|....*....|..
gi 1002302658 366 LMGACCNAKDWKKALQLFEEIK 387
Cdd:PLN03081  296 MLAGYALHGYSEEALCLYYEMR 317
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 347-404 5.04e-06

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 44.27  E-value: 5.04e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1002302658 347 IMKDARAKGYQVGTIAYSSLMGACCNAKDWKKALQLFEEIKSIKLMPTVSMMNALITA 404
Cdd:pfam13812   2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGV 59
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 137-169 2.71e-05

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 41.56  E-value: 2.71e-05
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1002302658 137 GLKPDCKLYTTLISTCAKCGKVDAMFEVFHEMV 169
Cdd:pfam12854   2 GLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 172-197 4.61e-05

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 40.79  E-value: 4.61e-05
                          10        20
                  ....*....|....*....|....*.
gi 1002302658 172 GIEPNVNTYSALIDGCAKAGQVAKAF 197
Cdd:pfam12854   2 GLKPDVVTYNTLINGLCRAGRVDEAF 27
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 179-211 9.46e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 40.13  E-value: 9.46e-05
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1002302658 179 TYSALIDGCAKAGQVAKAFGAYGIMSSKKVKPD 211
Cdd:TIGR00756   2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 145-173 1.11e-04

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 39.76  E-value: 1.11e-04
                          10        20
                  ....*....|....*....|....*....
gi 1002302658 145 YTTLISTCAKCGKVDAMFEVFHEMVSAGI 173
Cdd:pfam01535   3 YNSLISGYCKNGKLEEALELFKEMKEKGI 31
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 266-459 1.62e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 44.33  E-value: 1.62e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658 266 IQAGQADRAREVYKMLQEYNIKgTPEVYTIALRSCSLTGDLGFALKIYEDMNKIGvQPDEMFLSALVDVAGHARRADAAF 345
Cdd:COG2956    87 LKAGLLDRAEELLEKLLELDPD-DAEALRLLAEIYEQEGDWEKAIEVLERLLKLG-PENAHAYCELAELYLEQGDYDEAI 164

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002302658 346 EIMKDARAKgYQVGTIAYSSLMGACCNAKDWKKALQLFEEIksIKLMP-TVSMMNALITALCDGDQVLKSFEVLSEMKRL 424
Cdd:COG2956   165 EALEKALKL-DPDCARALLLLAELYLEQGDYEEAIAALERA--LEQDPdYLPALPRLAELYEKLGDPEEALELLRKALEL 241

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1002302658 425 GVC-PNMITYSVLFVACERNAEAQlgLDLFEQLKID 459
Cdd:COG2956   242 DPSdDLLLALADLLERKEGLEAAL--ALLERQLRRH 275
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 105-154 1.87e-04

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 39.65  E-value: 1.87e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1002302658 105 PKMSTFNMLLSVCANSQDFDGALQVMVLLKEAGLKPDCKLYTTLISTCAK 154
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 210-265 2.12e-04

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 39.27  E-value: 2.12e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1002302658 210 PDRVVFNALISACGESGAVARAFDVLSEMtaeasESKGskpILPDHVTVGALMKTC 265
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEM-----KKRG---VKPNVYTYTILINGL 48
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 361-388 8.81e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 37.43  E-value: 8.81e-04
                          10        20
                  ....*....|....*....|....*...
gi 1002302658 361 IAYSSLMGACCNAKDWKKALQLFEEIKS 388
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKE 28
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 382-443 1.75e-03

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 37.34  E-value: 1.75e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1002302658 382 LFEEIKSIKLMPTVSMMNALITALCD-GDQVLkSFEVLSEMKRLGVCPNMITYSVLFVACERN 443
Cdd:pfam13812   2 ILREMVRDGIQLNVNTYTHLLHAYANvGNLKL-ALEIFERMKKKGIKPTLDTYNAILGVIGGR 63
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 105-154 2.15e-03

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 36.95  E-value: 2.15e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1002302658 105 PKMSTFNMLLSVCANSQDFDGALQVMVLLKEAGLKPDCKLYTTLISTCAK 154
Cdd:pfam13812  13 LNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGG 62
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 361-388 2.25e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 35.90  E-value: 2.25e-03
                          10        20
                  ....*....|....*....|....*...
gi 1002302658 361 IAYSSLMGACCNAKDWKKALQLFEEIKS 388
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKE 28
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 208-239 2.42e-03

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 36.17  E-value: 2.42e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1002302658 208 VKPDRVVFNALISACGESGAVARAFDVLSEMT 239
Cdd:pfam12854   3 LKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 109-142 3.17e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 35.89  E-value: 3.17e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1002302658 109 TFNMLLSVCANSQDFDGALQVMVLLKEAGLKPDC 142
Cdd:TIGR00756   2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 311-372 4.41e-03

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 36.18  E-value: 4.41e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1002302658 311 KIYEDMNKIGVQPDEMFLSALVDVAGHARRADAAFEIMKDARAKGYQVGTIAYSSLMGACCN 372
Cdd:pfam13812   1 SILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGG 62
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 399-429 7.61e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 34.74  E-value: 7.61e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1002302658 399 NALITALCDGDQVLKSFEVLSEMKRLGVCPN 429
Cdd:TIGR00756   4 NTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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