|
Name |
Accession |
Description |
Interval |
E-value |
| NB-ARC super family |
cl26397 |
NB-ARC domain; |
183-396 |
6.83e-24 |
|
NB-ARC domain; The actual alignment was detected with superfamily member pfam00931:
Pssm-ID: 395745 [Multi-domain] Cd Length: 245 Bit Score: 102.07 E-value: 6.83e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002309591 183 EKPIEHLVQLLDEagaGGGPQqlrVIAIVGFRGSGKTTLARAVYSRS---GRQFRERAWVDASRWTDVGDLLADIVRQVC 259
Cdd:pfam00931 2 EDMVEKVIGKLSE---KDEPG---IVGIHGMGGVGKTTLAAQIFNDFdevEGHFDSVAWVVVSKTFTISTLQQTILQNLG 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002309591 260 LGEYDVSESHE----ENLRNRLKNKRYLIVLDDI-SMEQWNAIESIFENNGRGSRVIVTTAILSVANsctayksganggc 334
Cdd:pfam00931 76 LSEDDWDNKEEgelaRKIRRALLTKRFLLVLDDVwDEEDWDKIGIPLPDRENGCRVLLTTRSEEVAG------------- 142
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1002309591 335 cirRHGCVY-KMQT--LGEAHAKEL---ALGGGSDQRPPELEHGSATLMAKCDGLPLALVSVANHLRC 396
Cdd:pfam00931 143 ---RVGGPSdPHEVelLEPDEAWELfenKVFPKTLGECELLEDVAKEIVEKCRGLPLALKVLGGLLSC 207
|
|
| RX-CC_like super family |
cl36576 |
Coiled-coil domain of the potato virux X resistance protein and similar proteins; The potato ... |
6-138 |
2.16e-10 |
|
Coiled-coil domain of the potato virux X resistance protein and similar proteins; The potato virus X resistance protein (RX) confers resistance against potato virus X. It is a member of a family of resistance proteins with a domain architecture that includes an N-terminal coiled-coil domain (modeled here), a nucleotide-binding domain, and leucine-rich repeats (CC-NB-LRR). These intracellular resistance proteins recognize pathogen effector proteins and will subsequently trigger a response that may be as severe as localized cell death. The N-terminal coiled-coil domain of RX has been shown to interact with RanGAP2, which is a necessary co-factor in the resistance response. The actual alignment was detected with superfamily member cd14798:
Pssm-ID: 453100 [Multi-domain] Cd Length: 124 Bit Score: 59.17 E-value: 2.16e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002309591 6 ATAFTKCVVGKLLEVLDTRYKMLRDLSHESASMQNDLLLLAAFMDDQLRRSSSSPaaerptaVLRAYTELMRELTHDMED 85
Cdd:cd14798 1 AEAAVSFLLEKLGELLEQEADLLSGVKEEIESLKDELESMQAFLKDADAKQDEDE-------ELKDWVKQVRDVAYDAED 73
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1002309591 86 SIERFLHRVAPRDDHGGagapsWPRRAARWVATLRTRLRFAAEIRKLKTRLED 138
Cdd:cd14798 74 IIDSFLLKLVPDKRRGG-----FLKRLFSLLKELKELHQVAKEIQSIKSRIKD 121
|
|
| LRR super family |
cl34836 |
Leucine-rich repeat (LRR) protein [Transcription]; |
576-688 |
5.94e-05 |
|
Leucine-rich repeat (LRR) protein [Transcription]; The actual alignment was detected with superfamily member COG4886:
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 46.85 E-value: 5.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002309591 576 NTTTAALSTTDLSCVRSLTVFGDGGDAVSNLRKCKLLRVLDLEQCTtalsddhlaDICKLWNLRYLSIGmSSNVTMLPDN 655
Cdd:COG4886 62 LSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGNE---------ELSNLTNLESLDLS-GNQLTDLPEE 131
|
90 100 110
....*....|....*....|....*....|...
gi 1002309591 656 IRRLKLLETIHLSKTKVTMLPLQVVGLPCLAHL 688
Cdd:COG4886 132 LANLTNLKELDLSNNQLTDLPEPLGNLTNLKSL 164
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| NB-ARC |
pfam00931 |
NB-ARC domain; |
183-396 |
6.83e-24 |
|
NB-ARC domain;
Pssm-ID: 395745 [Multi-domain] Cd Length: 245 Bit Score: 102.07 E-value: 6.83e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002309591 183 EKPIEHLVQLLDEagaGGGPQqlrVIAIVGFRGSGKTTLARAVYSRS---GRQFRERAWVDASRWTDVGDLLADIVRQVC 259
Cdd:pfam00931 2 EDMVEKVIGKLSE---KDEPG---IVGIHGMGGVGKTTLAAQIFNDFdevEGHFDSVAWVVVSKTFTISTLQQTILQNLG 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002309591 260 LGEYDVSESHE----ENLRNRLKNKRYLIVLDDI-SMEQWNAIESIFENNGRGSRVIVTTAILSVANsctayksganggc 334
Cdd:pfam00931 76 LSEDDWDNKEEgelaRKIRRALLTKRFLLVLDDVwDEEDWDKIGIPLPDRENGCRVLLTTRSEEVAG------------- 142
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1002309591 335 cirRHGCVY-KMQT--LGEAHAKEL---ALGGGSDQRPPELEHGSATLMAKCDGLPLALVSVANHLRC 396
Cdd:pfam00931 143 ---RVGGPSdPHEVelLEPDEAWELfenKVFPKTLGECELLEDVAKEIVEKCRGLPLALKVLGGLLSC 207
|
|
| RX-CC_like |
cd14798 |
Coiled-coil domain of the potato virux X resistance protein and similar proteins; The potato ... |
6-138 |
2.16e-10 |
|
Coiled-coil domain of the potato virux X resistance protein and similar proteins; The potato virus X resistance protein (RX) confers resistance against potato virus X. It is a member of a family of resistance proteins with a domain architecture that includes an N-terminal coiled-coil domain (modeled here), a nucleotide-binding domain, and leucine-rich repeats (CC-NB-LRR). These intracellular resistance proteins recognize pathogen effector proteins and will subsequently trigger a response that may be as severe as localized cell death. The N-terminal coiled-coil domain of RX has been shown to interact with RanGAP2, which is a necessary co-factor in the resistance response.
Pssm-ID: 271353 [Multi-domain] Cd Length: 124 Bit Score: 59.17 E-value: 2.16e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002309591 6 ATAFTKCVVGKLLEVLDTRYKMLRDLSHESASMQNDLLLLAAFMDDQLRRSSSSPaaerptaVLRAYTELMRELTHDMED 85
Cdd:cd14798 1 AEAAVSFLLEKLGELLEQEADLLSGVKEEIESLKDELESMQAFLKDADAKQDEDE-------ELKDWVKQVRDVAYDAED 73
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1002309591 86 SIERFLHRVAPRDDHGGagapsWPRRAARWVATLRTRLRFAAEIRKLKTRLED 138
Cdd:cd14798 74 IIDSFLLKLVPDKRRGG-----FLKRLFSLLKELKELHQVAKEIQSIKSRIKD 121
|
|
| COG3903 |
COG3903 |
Predicted ATPase [General function prediction only]; |
41-287 |
2.06e-09 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443109 [Multi-domain] Cd Length: 933 Bit Score: 61.96 E-value: 2.06e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002309591 41 DLLLLAAFMDDQLRRSSSSPAAERPTAVLRAYTELMRELTHDMEDSIERFLHRVAPRDDHGGAGAPSWPRRAARWVATLR 120
Cdd:COG3903 15 ALALLALAAAAAAAAAAAALAAALEALRAALALLLLLLAALALALAALALLLAAAALLLRLLLLLLAARLLARLAAAAAA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002309591 121 TRLRFAAEIRKLKTRLEDETKRLRNAVEAAAAAGGGGHSSATPALAAAAPRGGHVEPNPVGmekPIEHLVQLLDEAGAGG 200
Cdd:COG3903 95 ALARAAAAALALLLRLRLAARRLLLARALAAAALAAAAAAAAAAAAAPAPPPPAPPPPAPL---AALARRAAALAAAARA 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002309591 201 GPQQLRVIAIVGFRGSGKTTLARAVYSRSGRQFRERAW-VDASRWTDVGDLLADIVRQVCLGEyDVSESHEENLRNRLKN 279
Cdd:COG3903 172 LLSAARLVTLTGPGGVGKTRLALEVAHRLADRFPDGVWfVDLAGVTDPALVLAAVARALGVRD-APGRDPAARLRAALAD 250
|
....*...
gi 1002309591 280 KRYLIVLD 287
Cdd:COG3903 251 RRLLLVLD 258
|
|
| Rx_N |
pfam18052 |
Rx N-terminal domain; This entry represents the N-terminal domain found in many plant ... |
13-102 |
1.01e-08 |
|
Rx N-terminal domain; This entry represents the N-terminal domain found in many plant resistance proteins. This domain has been predicted to be a coiled-coil, however the structure shows that it adopts a four helical bundle fold.
Pssm-ID: 436239 Cd Length: 93 Bit Score: 53.43 E-value: 1.01e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002309591 13 VVGKLLEVLDTRYKMLRDLSHESASMQNDLLLLAAFMDDQLRRSSSSPAaerptavLRAYTELMRELTHDMEDSIERFLH 92
Cdd:pfam18052 5 LLEKLGSLLAEEAKLLKGVKDDLEKLKDELESIQAFLEDAERKQITDEQ-------VKLWLKQLRDVAYDAEDVLDEFLY 77
|
90
....*....|
gi 1002309591 93 RVAPRDDHGG 102
Cdd:pfam18052 78 EALRRKSSPK 87
|
|
| PLN03210 |
PLN03210 |
Resistant to P. syringae 6; Provisional |
180-314 |
1.07e-08 |
|
Resistant to P. syringae 6; Provisional
Pssm-ID: 215633 [Multi-domain] Cd Length: 1153 Bit Score: 59.50 E-value: 1.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002309591 180 VGMEKPIEHLVQLLDEAGagggpQQLRVIAIVGFRGSGKTTLARAVYSRSGRQFRERAWVD---ASRWTDV--------- 247
Cdd:PLN03210 187 VGIEDHIAKMSSLLHLES-----EEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDrafISKSMEIyssanpddy 261
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1002309591 248 -------GDLLADIvrqvcLGEYDVSESHEENLRNRLKNKRYLIVLDDISMEQ-WNAIESIFENNGRGSRVIVTT 314
Cdd:PLN03210 262 nmklhlqRAFLSEI-----LDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQDvLDALAGQTQWFGSGSRIIVIT 331
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
576-688 |
5.94e-05 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 46.85 E-value: 5.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002309591 576 NTTTAALSTTDLSCVRSLTVFGDGGDAVSNLRKCKLLRVLDLEQCTtalsddhlaDICKLWNLRYLSIGmSSNVTMLPDN 655
Cdd:COG4886 62 LSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGNE---------ELSNLTNLESLDLS-GNQLTDLPEE 131
|
90 100 110
....*....|....*....|....*....|...
gi 1002309591 656 IRRLKLLETIHLSKTKVTMLPLQVVGLPCLAHL 688
Cdd:COG4886 132 LANLTNLKELDLSNNQLTDLPEPLGNLTNLKSL 164
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
206-291 |
1.85e-04 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 42.75 E-value: 1.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002309591 206 RVIAIVGFRGSGKTTLARAVYSRSGRQFRERAWVDASRWTDVGDLLADIVRQVCLGEYDVSESHEENLRNRLKNKRY-LI 284
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPdVL 82
|
....*..
gi 1002309591 285 VLDDISM 291
Cdd:smart00382 83 ILDEITS 89
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
28-232 |
6.58e-04 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 44.08 E-value: 6.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002309591 28 LRDLSHESASMQNDLLLLAAFMDDQLRRSSSSPAAERPTAVLRAYTELMRELTHDMEDSIERFLHRVAPRDDHGGAGAPS 107
Cdd:COG3899 137 LGLLLGGLLLAALAALLALAALAAAAAAAAAAAAARAARLRRARAARLAALALRALLLLVLLLLLLLLLLGLLLAAAAAL 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002309591 108 WPRRAARWVATLRTRLRFAAEIRKLKTRLEDETKRLRNAVEAAAAAGGGGHSSATPALAAAAPRGGHVEPNP-VGMEKPI 186
Cdd:COG3899 217 AAAAAAAAAAAPAAPVVLVAALLLALAALLALLLLAARLLGLAGAAALLLLGLLAAAAAGRRLLARRLIPQPlVGREAEL 296
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1002309591 187 EHLVQLLDEAGAGGGpqqlRVIAIVGFRGSGKTTLARAVYSRSGRQ 232
Cdd:COG3899 297 AALLAALERARAGRG----ELVLVSGEAGIGKSRLVRELARRARAR 338
|
|
| SK |
cd00464 |
Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic ... |
208-233 |
3.50e-03 |
|
Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Pssm-ID: 238260 [Multi-domain] Cd Length: 154 Bit Score: 39.08 E-value: 3.50e-03
10 20
....*....|....*....|....*.
gi 1002309591 208 IAIVGFRGSGKTTLARAVYSRSGRQF 233
Cdd:cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPF 27
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| NB-ARC |
pfam00931 |
NB-ARC domain; |
183-396 |
6.83e-24 |
|
NB-ARC domain;
Pssm-ID: 395745 [Multi-domain] Cd Length: 245 Bit Score: 102.07 E-value: 6.83e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002309591 183 EKPIEHLVQLLDEagaGGGPQqlrVIAIVGFRGSGKTTLARAVYSRS---GRQFRERAWVDASRWTDVGDLLADIVRQVC 259
Cdd:pfam00931 2 EDMVEKVIGKLSE---KDEPG---IVGIHGMGGVGKTTLAAQIFNDFdevEGHFDSVAWVVVSKTFTISTLQQTILQNLG 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002309591 260 LGEYDVSESHE----ENLRNRLKNKRYLIVLDDI-SMEQWNAIESIFENNGRGSRVIVTTAILSVANsctayksganggc 334
Cdd:pfam00931 76 LSEDDWDNKEEgelaRKIRRALLTKRFLLVLDDVwDEEDWDKIGIPLPDRENGCRVLLTTRSEEVAG------------- 142
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1002309591 335 cirRHGCVY-KMQT--LGEAHAKEL---ALGGGSDQRPPELEHGSATLMAKCDGLPLALVSVANHLRC 396
Cdd:pfam00931 143 ---RVGGPSdPHEVelLEPDEAWELfenKVFPKTLGECELLEDVAKEIVEKCRGLPLALKVLGGLLSC 207
|
|
| RX-CC_like |
cd14798 |
Coiled-coil domain of the potato virux X resistance protein and similar proteins; The potato ... |
6-138 |
2.16e-10 |
|
Coiled-coil domain of the potato virux X resistance protein and similar proteins; The potato virus X resistance protein (RX) confers resistance against potato virus X. It is a member of a family of resistance proteins with a domain architecture that includes an N-terminal coiled-coil domain (modeled here), a nucleotide-binding domain, and leucine-rich repeats (CC-NB-LRR). These intracellular resistance proteins recognize pathogen effector proteins and will subsequently trigger a response that may be as severe as localized cell death. The N-terminal coiled-coil domain of RX has been shown to interact with RanGAP2, which is a necessary co-factor in the resistance response.
Pssm-ID: 271353 [Multi-domain] Cd Length: 124 Bit Score: 59.17 E-value: 2.16e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002309591 6 ATAFTKCVVGKLLEVLDTRYKMLRDLSHESASMQNDLLLLAAFMDDQLRRSSSSPaaerptaVLRAYTELMRELTHDMED 85
Cdd:cd14798 1 AEAAVSFLLEKLGELLEQEADLLSGVKEEIESLKDELESMQAFLKDADAKQDEDE-------ELKDWVKQVRDVAYDAED 73
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1002309591 86 SIERFLHRVAPRDDHGGagapsWPRRAARWVATLRTRLRFAAEIRKLKTRLED 138
Cdd:cd14798 74 IIDSFLLKLVPDKRRGG-----FLKRLFSLLKELKELHQVAKEIQSIKSRIKD 121
|
|
| COG3903 |
COG3903 |
Predicted ATPase [General function prediction only]; |
41-287 |
2.06e-09 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443109 [Multi-domain] Cd Length: 933 Bit Score: 61.96 E-value: 2.06e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002309591 41 DLLLLAAFMDDQLRRSSSSPAAERPTAVLRAYTELMRELTHDMEDSIERFLHRVAPRDDHGGAGAPSWPRRAARWVATLR 120
Cdd:COG3903 15 ALALLALAAAAAAAAAAAALAAALEALRAALALLLLLLAALALALAALALLLAAAALLLRLLLLLLAARLLARLAAAAAA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002309591 121 TRLRFAAEIRKLKTRLEDETKRLRNAVEAAAAAGGGGHSSATPALAAAAPRGGHVEPNPVGmekPIEHLVQLLDEAGAGG 200
Cdd:COG3903 95 ALARAAAAALALLLRLRLAARRLLLARALAAAALAAAAAAAAAAAAAPAPPPPAPPPPAPL---AALARRAAALAAAARA 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002309591 201 GPQQLRVIAIVGFRGSGKTTLARAVYSRSGRQFRERAW-VDASRWTDVGDLLADIVRQVCLGEyDVSESHEENLRNRLKN 279
Cdd:COG3903 172 LLSAARLVTLTGPGGVGKTRLALEVAHRLADRFPDGVWfVDLAGVTDPALVLAAVARALGVRD-APGRDPAARLRAALAD 250
|
....*...
gi 1002309591 280 KRYLIVLD 287
Cdd:COG3903 251 RRLLLVLD 258
|
|
| Rx_N |
pfam18052 |
Rx N-terminal domain; This entry represents the N-terminal domain found in many plant ... |
13-102 |
1.01e-08 |
|
Rx N-terminal domain; This entry represents the N-terminal domain found in many plant resistance proteins. This domain has been predicted to be a coiled-coil, however the structure shows that it adopts a four helical bundle fold.
Pssm-ID: 436239 Cd Length: 93 Bit Score: 53.43 E-value: 1.01e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002309591 13 VVGKLLEVLDTRYKMLRDLSHESASMQNDLLLLAAFMDDQLRRSSSSPAaerptavLRAYTELMRELTHDMEDSIERFLH 92
Cdd:pfam18052 5 LLEKLGSLLAEEAKLLKGVKDDLEKLKDELESIQAFLEDAERKQITDEQ-------VKLWLKQLRDVAYDAEDVLDEFLY 77
|
90
....*....|
gi 1002309591 93 RVAPRDDHGG 102
Cdd:pfam18052 78 EALRRKSSPK 87
|
|
| PLN03210 |
PLN03210 |
Resistant to P. syringae 6; Provisional |
180-314 |
1.07e-08 |
|
Resistant to P. syringae 6; Provisional
Pssm-ID: 215633 [Multi-domain] Cd Length: 1153 Bit Score: 59.50 E-value: 1.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002309591 180 VGMEKPIEHLVQLLDEAGagggpQQLRVIAIVGFRGSGKTTLARAVYSRSGRQFRERAWVD---ASRWTDV--------- 247
Cdd:PLN03210 187 VGIEDHIAKMSSLLHLES-----EEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDrafISKSMEIyssanpddy 261
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1002309591 248 -------GDLLADIvrqvcLGEYDVSESHEENLRNRLKNKRYLIVLDDISMEQ-WNAIESIFENNGRGSRVIVTT 314
Cdd:PLN03210 262 nmklhlqRAFLSEI-----LDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQDvLDALAGQTQWFGSGSRIIVIT 331
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
206-312 |
1.27e-05 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 45.80 E-value: 1.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002309591 206 RVIAIVGFRGSGKTTLARAVYSRSGRQFRERAWVDASRWTDVGDLLADIVRQvcLGEYDVSESHEENLRNRL------KN 279
Cdd:pfam13401 6 GILVLTGESGTGKTTLLRRLLEQLPEVRDSVVFVDLPSGTSPKDLLRALLRA--LGLPLSGRLSKEELLAALqqlllaLA 83
|
90 100 110
....*....|....*....|....*....|....*.
gi 1002309591 280 KRYLIVLDD---ISMEQWNAIESIFENNGRGSRVIV 312
Cdd:pfam13401 84 VAVVLIIDEaqhLSLEALEELRDLLNLSSKLLQLIL 119
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
576-688 |
5.94e-05 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 46.85 E-value: 5.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002309591 576 NTTTAALSTTDLSCVRSLTVFGDGGDAVSNLRKCKLLRVLDLEQCTtalsddhlaDICKLWNLRYLSIGmSSNVTMLPDN 655
Cdd:COG4886 62 LSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGNE---------ELSNLTNLESLDLS-GNQLTDLPEE 131
|
90 100 110
....*....|....*....|....*....|...
gi 1002309591 656 IRRLKLLETIHLSKTKVTMLPLQVVGLPCLAHL 688
Cdd:COG4886 132 LANLTNLKELDLSNNQLTDLPEPLGNLTNLKSL 164
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
604-723 |
1.34e-04 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 45.69 E-value: 1.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002309591 604 SNLRKCKLLRVLDLeqcttalSDDHLADI----CKLWNLRYLSIGmSSNVTMLPDNIRRLKLLETIHLSKTKVTMLPLQV 679
Cdd:COG4886 153 EPLGNLTNLKSLDL-------SNNQLTDLpeelGNLTNLKELDLS-NNQITDLPEPLGNLTNLEELDLSGNQLTDLPEPL 224
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1002309591 680 VGLPclahlvgkfKLllpdqrgkKTVVISN----ELEKLAKKSNLQTL 723
Cdd:COG4886 225 ANLT---------NL--------ETLDLSNnqltDLPELGNLTNLEEL 255
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
206-291 |
1.85e-04 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 42.75 E-value: 1.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002309591 206 RVIAIVGFRGSGKTTLARAVYSRSGRQFRERAWVDASRWTDVGDLLADIVRQVCLGEYDVSESHEENLRNRLKNKRY-LI 284
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPdVL 82
|
....*..
gi 1002309591 285 VLDDISM 291
Cdd:smart00382 83 ILDEITS 89
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
28-232 |
6.58e-04 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 44.08 E-value: 6.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002309591 28 LRDLSHESASMQNDLLLLAAFMDDQLRRSSSSPAAERPTAVLRAYTELMRELTHDMEDSIERFLHRVAPRDDHGGAGAPS 107
Cdd:COG3899 137 LGLLLGGLLLAALAALLALAALAAAAAAAAAAAAARAARLRRARAARLAALALRALLLLVLLLLLLLLLLGLLLAAAAAL 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002309591 108 WPRRAARWVATLRTRLRFAAEIRKLKTRLEDETKRLRNAVEAAAAAGGGGHSSATPALAAAAPRGGHVEPNP-VGMEKPI 186
Cdd:COG3899 217 AAAAAAAAAAAPAAPVVLVAALLLALAALLALLLLAARLLGLAGAAALLLLGLLAAAAAGRRLLARRLIPQPlVGREAEL 296
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1002309591 187 EHLVQLLDEAGAGGGpqqlRVIAIVGFRGSGKTTLARAVYSRSGRQ 232
Cdd:COG3899 297 AALLAALERARAGRG----ELVLVSGEAGIGKSRLVRELARRARAR 338
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
606-688 |
8.88e-04 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 43.00 E-value: 8.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002309591 606 LRKCKLLRVLDLEQctTALSDdhL-ADICKLWNLRYLSIGmSSNVTMLPDNIRRLKLLETIHLSKTKVTMLPLQVVGLPC 684
Cdd:COG4886 109 LSNLTNLESLDLSG--NQLTD--LpEELANLTNLKELDLS-NNQLTDLPEPLGNLTNLKSLDLSNNQLTDLPEELGNLTN 183
|
....
gi 1002309591 685 LAHL 688
Cdd:COG4886 184 LKEL 187
|
|
| SK |
cd00464 |
Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic ... |
208-233 |
3.50e-03 |
|
Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Pssm-ID: 238260 [Multi-domain] Cd Length: 154 Bit Score: 39.08 E-value: 3.50e-03
10 20
....*....|....*....|....*.
gi 1002309591 208 IAIVGFRGSGKTTLARAVYSRSGRQF 233
Cdd:cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPF 27
|
|
| AAA_16 |
pfam13191 |
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ... |
178-232 |
6.01e-03 |
|
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.
Pssm-ID: 433025 [Multi-domain] Cd Length: 167 Bit Score: 38.64 E-value: 6.01e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 1002309591 178 NPVGMEKPIEHLVQLLDEAGAGGGPqqlrVIAIVGFRGSGKTTLARAVYSRSGRQ 232
Cdd:pfam13191 1 RLVGREEELEQLLDALDRVRSGRPP----SVLLTGEAGTGKTTLLRELLRALERD 51
|
|
| CDC6 |
COG1474 |
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair]; |
186-289 |
8.63e-03 |
|
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair];
Pssm-ID: 441083 [Multi-domain] Cd Length: 389 Bit Score: 39.83 E-value: 8.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002309591 186 IEHLVQLLDEAGAGGGPqqlRVIAIVGFRGSGKTTLARAVYSRSGRQFRER------AWVDASRWTDVGDLLADIVRQVC 259
Cdd:COG1474 35 IEELASALRPALRGERP---SNVLIYGPTGTGKTAVAKYVLEELEEEAEERgvdvrvVYVNCRQASTRYRVLSRILEELG 111
|
90 100 110
....*....|....*....|....*....|....*....
gi 1002309591 260 LGeYDVSE---SHEEnLRNRLKN------KRYLIVLDDI 289
Cdd:COG1474 112 SG-EDIPStglSTDE-LFDRLYEalderdGVLVVVLDEI 148
|
|
|