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Conserved domains on  [gi|1002309944|ref|XP_015618342|]
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uncharacterized protein [Oryza sativa Japonica Group]

Protein Classification

GATA-type transcription factor( domain architecture ID 13319351)

GATA-type transcription factor binds to the DNA consensus sequence [AT]GATA[AG] and may function as a transcription factor/regulator

Gene Ontology:  GO:0043565|GO:0008270|GO:0006355
PubMed:  31574210

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ZnF_GATA smart00401
zinc finger binding to DNA consensus sequence [AT]GATA[AG];
237-287 6.36e-13

zinc finger binding to DNA consensus sequence [AT]GATA[AG];


:

Pssm-ID: 214648 [Multi-domain]  Cd Length: 52  Bit Score: 62.44  E-value: 6.36e-13
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1002309944  237 KRCTHCLSYKTPQWRTGPLGPKTLCNACGVRFKSGRLLPeyRPANSPTFVS 287
Cdd:smart00401   4 RSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGGLK--RPLSLKKDGI 52
ZnF_GATA super family cl33384
zinc finger binding to DNA consensus sequence [AT]GATA[AG];
157-193 1.05e-03

zinc finger binding to DNA consensus sequence [AT]GATA[AG];


The actual alignment was detected with superfamily member smart00401:

Pssm-ID: 214648 [Multi-domain]  Cd Length: 52  Bit Score: 36.63  E-value: 1.05e-03
                           10        20        30
                   ....*....|....*....|....*....|....*....
gi 1002309944  157 VITCSYCLSSQSPQWWDGPSGPT--CDACRLRIEARNGH 193
Cdd:smart00401   3 GRSCSNCGTTETPLWRRGPSGNKtlCNACGLYYKKHGGL 41
 
Name Accession Description Interval E-value
ZnF_GATA smart00401
zinc finger binding to DNA consensus sequence [AT]GATA[AG];
237-287 6.36e-13

zinc finger binding to DNA consensus sequence [AT]GATA[AG];


Pssm-ID: 214648 [Multi-domain]  Cd Length: 52  Bit Score: 62.44  E-value: 6.36e-13
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1002309944  237 KRCTHCLSYKTPQWRTGPLGPKTLCNACGVRFKSGRLLPeyRPANSPTFVS 287
Cdd:smart00401   4 RSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGGLK--RPLSLKKDGI 52
GATA pfam00320
GATA zinc finger; This domain uses four cysteine residues to coordinate a zinc ion. This ...
 239-274 2.41e-12

GATA zinc finger; This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.


Pssm-ID: 425605 [Multi-domain]  Cd Length: 36  Bit Score: 60.41  E-value: 2.41e-12
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1002309944 239 CTHCLSYKTPQWRTGPLGPKTLCNACGVRFKSGRLL 274
Cdd:pfam00320   1 CSNCGTTKTPLWRRGPNGNRTLCNACGLYYKKKGLK 36
ZnF_GATA cd00202
Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] ...
 238-295 7.55e-12

Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C


Pssm-ID: 238123 [Multi-domain]  Cd Length: 54  Bit Score: 59.31  E-value: 7.55e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1002309944 238 RCTHCLSYKTPQWRTGPLGPKTLCNACGVRFKSGRllpEYRPANSPTFvSDIHSNSHK 295
Cdd:cd00202     1 ACSNCGTTTTPLWRRGPSGGSTLCNACGLYWKKHG---VMRPLSKRKK-DQIKRRNRK 54
ZnF_GATA smart00401
zinc finger binding to DNA consensus sequence [AT]GATA[AG];
157-193 1.05e-03

zinc finger binding to DNA consensus sequence [AT]GATA[AG];


Pssm-ID: 214648 [Multi-domain]  Cd Length: 52  Bit Score: 36.63  E-value: 1.05e-03
                           10        20        30
                   ....*....|....*....|....*....|....*....
gi 1002309944  157 VITCSYCLSSQSPQWWDGPSGPT--CDACRLRIEARNGH 193
Cdd:smart00401   3 GRSCSNCGTTETPLWRRGPSGNKtlCNACGLYYKKHGGL 41
 
Name Accession Description Interval E-value
ZnF_GATA smart00401
zinc finger binding to DNA consensus sequence [AT]GATA[AG];
237-287 6.36e-13

zinc finger binding to DNA consensus sequence [AT]GATA[AG];


Pssm-ID: 214648 [Multi-domain]  Cd Length: 52  Bit Score: 62.44  E-value: 6.36e-13
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1002309944  237 KRCTHCLSYKTPQWRTGPLGPKTLCNACGVRFKSGRLLPeyRPANSPTFVS 287
Cdd:smart00401   4 RSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGGLK--RPLSLKKDGI 52
GATA pfam00320
GATA zinc finger; This domain uses four cysteine residues to coordinate a zinc ion. This ...
 239-274 2.41e-12

GATA zinc finger; This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.


Pssm-ID: 425605 [Multi-domain]  Cd Length: 36  Bit Score: 60.41  E-value: 2.41e-12
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1002309944 239 CTHCLSYKTPQWRTGPLGPKTLCNACGVRFKSGRLL 274
Cdd:pfam00320   1 CSNCGTTKTPLWRRGPNGNRTLCNACGLYYKKKGLK 36
ZnF_GATA cd00202
Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] ...
 238-295 7.55e-12

Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C


Pssm-ID: 238123 [Multi-domain]  Cd Length: 54  Bit Score: 59.31  E-value: 7.55e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1002309944 238 RCTHCLSYKTPQWRTGPLGPKTLCNACGVRFKSGRllpEYRPANSPTFvSDIHSNSHK 295
Cdd:cd00202     1 ACSNCGTTTTPLWRRGPSGGSTLCNACGLYWKKHG---VMRPLSKRKK-DQIKRRNRK 54
ZnF_GATA smart00401
zinc finger binding to DNA consensus sequence [AT]GATA[AG];
157-193 1.05e-03

zinc finger binding to DNA consensus sequence [AT]GATA[AG];


Pssm-ID: 214648 [Multi-domain]  Cd Length: 52  Bit Score: 36.63  E-value: 1.05e-03
                           10        20        30
                   ....*....|....*....|....*....|....*....
gi 1002309944  157 VITCSYCLSSQSPQWWDGPSGPT--CDACRLRIEARNGH 193
Cdd:smart00401   3 GRSCSNCGTTETPLWRRGPSGNKtlCNACGLYYKKHGGL 41
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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