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Conserved domains on  [gi|1002310304|ref|XP_015618519|]
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B-box zinc finger protein 23 [Oryza sativa Japonica Group]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Bbox1_BBX-like cd19821
B-box-type 1 zinc finger found in B-box (BBX) family of plant transcription factors and ...
 5-47 2.56e-13

B-box-type 1 zinc finger found in B-box (BBX) family of plant transcription factors and similar proteins; The BBX family includes a group of zinc finger transcription factors that contain one or two B-box motifs, and sometimes also feature a CCT (CONSTANS, CO-like, and TOC1) domain. They play important roles in plant growth and development, including seedling photomorphogenesis, photoperiodic regulation of flowering, shade avoidance, and responses to biotic and abiotic stresses. Their B-box motifs show high sequence similarity with B-Box-type 1 zinc finger found in tripartite motif-containing proteins (TRIMs) and are involved in mediating transcriptional regulation and protein-protein interaction in plant signaling. The type 1 B-box (Bbox1) zinc finger is characterized by a C6H2 zinc-binding consensus motif; this family contains a modified motif, C3XC2H2, where X can be D, E, C or H.


:

Pssm-ID: 380879  Cd Length: 44  Bit Score: 61.93  E-value: 2.56e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1002310304   5 CDACEQAEAAVLCCADEAALCRRCDAAVHSANRLAGKHTRVAL 47
Cdd:cd19821     2 CDSCESAPAVVYCRADRASLCRACDAKVHSANKLASRHQRVPL 44
BBOX smart00336
B-Box-type zinc finger;
64-90 1.62e-05

B-Box-type zinc finger;


:

Pssm-ID: 197662 [Multi-domain]  Cd Length: 42  Bit Score: 40.78  E-value: 1.62e-05
                           10        20
                   ....*....|....*....|....*..
gi 1002310304   64 PTCDICQEKTGYFFCLEDRALLCRSCD 90
Cdd:smart00336   4 PKCDSHGDEPAEFFCEECGALLCRTCD 30
 
Name Accession Description Interval E-value
Bbox1_BBX-like cd19821
B-box-type 1 zinc finger found in B-box (BBX) family of plant transcription factors and ...
 5-47 2.56e-13

B-box-type 1 zinc finger found in B-box (BBX) family of plant transcription factors and similar proteins; The BBX family includes a group of zinc finger transcription factors that contain one or two B-box motifs, and sometimes also feature a CCT (CONSTANS, CO-like, and TOC1) domain. They play important roles in plant growth and development, including seedling photomorphogenesis, photoperiodic regulation of flowering, shade avoidance, and responses to biotic and abiotic stresses. Their B-box motifs show high sequence similarity with B-Box-type 1 zinc finger found in tripartite motif-containing proteins (TRIMs) and are involved in mediating transcriptional regulation and protein-protein interaction in plant signaling. The type 1 B-box (Bbox1) zinc finger is characterized by a C6H2 zinc-binding consensus motif; this family contains a modified motif, C3XC2H2, where X can be D, E, C or H.


Pssm-ID: 380879  Cd Length: 44  Bit Score: 61.93  E-value: 2.56e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1002310304   5 CDACEQAEAAVLCCADEAALCRRCDAAVHSANRLAGKHTRVAL 47
Cdd:cd19821     2 CDSCESAPAVVYCRADRASLCRACDAKVHSANKLASRHQRVPL 44
BBOX smart00336
B-Box-type zinc finger;
5-47 9.55e-07

B-Box-type zinc finger;


Pssm-ID: 197662 [Multi-domain]  Cd Length: 42  Bit Score: 44.25  E-value: 9.55e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 1002310304    5 CDACEQAEAAVLCCADEAALCRRCDAAVHSanrlagKHTRVAL 47
Cdd:smart00336   6 CDSHGDEPAEFFCEECGALLCRTCDEAEHR------GHTVVLL 42
BBOX smart00336
B-Box-type zinc finger;
64-90 1.62e-05

B-Box-type zinc finger;


Pssm-ID: 197662 [Multi-domain]  Cd Length: 42  Bit Score: 40.78  E-value: 1.62e-05
                           10        20
                   ....*....|....*....|....*..
gi 1002310304   64 PTCDICQEKTGYFFCLEDRALLCRSCD 90
Cdd:smart00336   4 PKCDSHGDEPAEFFCEECGALLCRTCD 30
Bbox1_BBX-like cd19821
B-box-type 1 zinc finger found in B-box (BBX) family of plant transcription factors and ...
 66-90 9.25e-05

B-box-type 1 zinc finger found in B-box (BBX) family of plant transcription factors and similar proteins; The BBX family includes a group of zinc finger transcription factors that contain one or two B-box motifs, and sometimes also feature a CCT (CONSTANS, CO-like, and TOC1) domain. They play important roles in plant growth and development, including seedling photomorphogenesis, photoperiodic regulation of flowering, shade avoidance, and responses to biotic and abiotic stresses. Their B-box motifs show high sequence similarity with B-Box-type 1 zinc finger found in tripartite motif-containing proteins (TRIMs) and are involved in mediating transcriptional regulation and protein-protein interaction in plant signaling. The type 1 B-box (Bbox1) zinc finger is characterized by a C6H2 zinc-binding consensus motif; this family contains a modified motif, C3XC2H2, where X can be D, E, C or H.


Pssm-ID: 380879  Cd Length: 44  Bit Score: 38.82  E-value: 9.25e-05
                          10        20
                  ....*....|....*....|....*
gi 1002310304  66 CDICQEKTGYFFCLEDRALLCRSCD 90
Cdd:cd19821     2 CDSCESAPAVVYCRADRASLCRACD 26
 
Name Accession Description Interval E-value
Bbox1_BBX-like cd19821
B-box-type 1 zinc finger found in B-box (BBX) family of plant transcription factors and ...
 5-47 2.56e-13

B-box-type 1 zinc finger found in B-box (BBX) family of plant transcription factors and similar proteins; The BBX family includes a group of zinc finger transcription factors that contain one or two B-box motifs, and sometimes also feature a CCT (CONSTANS, CO-like, and TOC1) domain. They play important roles in plant growth and development, including seedling photomorphogenesis, photoperiodic regulation of flowering, shade avoidance, and responses to biotic and abiotic stresses. Their B-box motifs show high sequence similarity with B-Box-type 1 zinc finger found in tripartite motif-containing proteins (TRIMs) and are involved in mediating transcriptional regulation and protein-protein interaction in plant signaling. The type 1 B-box (Bbox1) zinc finger is characterized by a C6H2 zinc-binding consensus motif; this family contains a modified motif, C3XC2H2, where X can be D, E, C or H.


Pssm-ID: 380879  Cd Length: 44  Bit Score: 61.93  E-value: 2.56e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1002310304   5 CDACEQAEAAVLCCADEAALCRRCDAAVHSANRLAGKHTRVAL 47
Cdd:cd19821     2 CDSCESAPAVVYCRADRASLCRACDAKVHSANKLASRHQRVPL 44
BBOX smart00336
B-Box-type zinc finger;
5-47 9.55e-07

B-Box-type zinc finger;


Pssm-ID: 197662 [Multi-domain]  Cd Length: 42  Bit Score: 44.25  E-value: 9.55e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 1002310304    5 CDACEQAEAAVLCCADEAALCRRCDAAVHSanrlagKHTRVAL 47
Cdd:smart00336   6 CDSHGDEPAEFFCEECGALLCRTCDEAEHR------GHTVVLL 42
BBOX smart00336
B-Box-type zinc finger;
64-90 1.62e-05

B-Box-type zinc finger;


Pssm-ID: 197662 [Multi-domain]  Cd Length: 42  Bit Score: 40.78  E-value: 1.62e-05
                           10        20
                   ....*....|....*....|....*..
gi 1002310304   64 PTCDICQEKTGYFFCLEDRALLCRSCD 90
Cdd:smart00336   4 PKCDSHGDEPAEFFCEECGALLCRTCD 30
Bbox1_BBX-like cd19821
B-box-type 1 zinc finger found in B-box (BBX) family of plant transcription factors and ...
 66-90 9.25e-05

B-box-type 1 zinc finger found in B-box (BBX) family of plant transcription factors and similar proteins; The BBX family includes a group of zinc finger transcription factors that contain one or two B-box motifs, and sometimes also feature a CCT (CONSTANS, CO-like, and TOC1) domain. They play important roles in plant growth and development, including seedling photomorphogenesis, photoperiodic regulation of flowering, shade avoidance, and responses to biotic and abiotic stresses. Their B-box motifs show high sequence similarity with B-Box-type 1 zinc finger found in tripartite motif-containing proteins (TRIMs) and are involved in mediating transcriptional regulation and protein-protein interaction in plant signaling. The type 1 B-box (Bbox1) zinc finger is characterized by a C6H2 zinc-binding consensus motif; this family contains a modified motif, C3XC2H2, where X can be D, E, C or H.


Pssm-ID: 380879  Cd Length: 44  Bit Score: 38.82  E-value: 9.25e-05
                          10        20
                  ....*....|....*....|....*
gi 1002310304  66 CDICQEKTGYFFCLEDRALLCRSCD 90
Cdd:cd19821     2 CDSCESAPAVVYCRADRASLCRACD 26
Bbox1 cd19757
B-box-type 1 zinc finger (Bbox1); The B-box-type zinc finger is a short zinc binding domain of ...
 5-47 1.25e-04

B-box-type 1 zinc finger (Bbox1); The B-box-type zinc finger is a short zinc binding domain of around 40 amino acid residues in length. It has been found in transcription factors, ribonucleoproteins and proto-oncoproteins, such as in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). The B-box-type zinc finger often presents in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain, in functionally unrelated proteins, most likely mediating protein-protein interactions. Based on different consensus sequences and the spacing of the 7-8 zinc-binding residues, the B-box-type zinc fingers can be divided into two groups, type 1 (Bbox1: C6H2) and type 2 (Bbox2: CHC3H2). This family corresponds to the type 1 B-box (Bbox1).


Pssm-ID: 380815 [Multi-domain]  Cd Length: 44  Bit Score: 38.25  E-value: 1.25e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1002310304   5 CDACEQAEAAVLCCADEAALCRRCDAAVHSANRLAGKHTRVAL 47
Cdd:cd19757     2 CDECEEREATVYCLECEEFLCDDCSDAIHRRGKLTRSHKLVPL 44
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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