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Conserved domains on  [gi|1002310517|ref|XP_015618620|]
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peptidyl-prolyl cis-trans isomerase FKBP42 [Oryza sativa Japonica Group]

Protein Classification

FKBP_C and PRK15359 domain-containing protein( domain architecture ID 13624795)

FKBP_C and PRK15359 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FKBP_C pfam00254
FKBP-type peptidyl-prolyl cis-trans isomerase;
69-163 2.55e-16

FKBP-type peptidyl-prolyl cis-trans isomerase;


:

Pssm-ID: 459735  Cd Length: 94  Bit Score: 73.38  E-value: 2.55e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002310517  69 KKPSRFATCFVHYRAWVQGSShKFEDTWQEQHSIELVLGKEKKeMTGLGIGVSNMRSGERALLHVNWELGYGKEGSfSFP 148
Cdd:pfam00254   3 EKAKKGDRVTVHYTGTLEDGT-VFDSSYDRGKPFEFTLGSGQV-IPGWDEGLVGMKVGEKRKLTIPPELAYGEEGL-AGP 79

                          90
                  ....*....|....*
gi 1002310517 149 NVPPMADLVYEVELI 163
Cdd:pfam00254  80 VIPPNATLVFEVELL 94
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
193-338 2.62e-13

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 68.40  E-value: 2.62e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002310517 193 GNEYFKEKKFEEAMQQYEMAIAYMGDdfmfqlfgkyrdMALAvknpcHLNMAACLIKLKRFDEAIAQCTIVLSEDENNVK 272
Cdd:COG4785    80 GVAYDSLGDYDLAIADFDQALELDPD------------LAEA-----YNNRGLAYLLLGDYDAALEDFDRALELDPDYAY 142

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1002310517 273 ALFRRGKARAELGQTESAREDFLKAKKYSPEDKEiQRELRSLAEQDKAlYQKQKELYKGLFGPRPE 338
Cdd:COG4785   143 AYLNRGIALYYLGRYELAIADLEKALELDPNDPE-RALWLYLAERKLD-PEKALALLLEDWATAYL 206
 
Name Accession Description Interval E-value
FKBP_C pfam00254
FKBP-type peptidyl-prolyl cis-trans isomerase;
69-163 2.55e-16

FKBP-type peptidyl-prolyl cis-trans isomerase;


Pssm-ID: 459735  Cd Length: 94  Bit Score: 73.38  E-value: 2.55e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002310517  69 KKPSRFATCFVHYRAWVQGSShKFEDTWQEQHSIELVLGKEKKeMTGLGIGVSNMRSGERALLHVNWELGYGKEGSfSFP 148
Cdd:pfam00254   3 EKAKKGDRVTVHYTGTLEDGT-VFDSSYDRGKPFEFTLGSGQV-IPGWDEGLVGMKVGEKRKLTIPPELAYGEEGL-AGP 79

                          90
                  ....*....|....*
gi 1002310517 149 NVPPMADLVYEVELI 163
Cdd:pfam00254  80 VIPPNATLVFEVELL 94
FkpA COG0545
FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein ...
 61-165 4.73e-16

FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440311 [Multi-domain]  Cd Length: 104  Bit Score: 72.91  E-value: 4.73e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002310517  61 QVIKEGHGKKPSRFATCFVHYRAW-VQGSshKFEDTWQEQHSIELVLGKEKkEMTGLGIGVSNMRSGERALLHVNWELGY 139
Cdd:COG0545     4 KVLKEGTGAKPKAGDTVTVHYTGTlLDGT--VFDSSYDRGEPATFPLGVGQ-VIPGWDEGLQGMKVGGKRRLVIPPELAY 80

                          90       100
                  ....*....|....*....|....*.
gi 1002310517 140 GKEGsfSFPNVPPMADLVYEVELIGF 165
Cdd:COG0545    81 GERG--AGGVIPPNSTLVFEVELLDV 104
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
193-338 2.62e-13

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 68.40  E-value: 2.62e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002310517 193 GNEYFKEKKFEEAMQQYEMAIAYMGDdfmfqlfgkyrdMALAvknpcHLNMAACLIKLKRFDEAIAQCTIVLSEDENNVK 272
Cdd:COG4785    80 GVAYDSLGDYDLAIADFDQALELDPD------------LAEA-----YNNRGLAYLLLGDYDAALEDFDRALELDPDYAY 142

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1002310517 273 ALFRRGKARAELGQTESAREDFLKAKKYSPEDKEiQRELRSLAEQDKAlYQKQKELYKGLFGPRPE 338
Cdd:COG4785   143 AYLNRGIALYYLGRYELAIADLEKALELDPNDPE-RALWLYLAERKLD-PEKALALLLEDWATAYL 206
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 152-339 2.89e-06

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 49.21  E-value: 2.89e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002310517 152 PMADLVYEVELIGFDDvKEGKARsdMTVEERIEAADRRKIEGNEYFKEKKFEEAMQQYEMAIAYMGDDFMFQlfgkyrdm 231
Cdd:TIGR00990  96 PKNAPVEPADELPEID-ESSVAN--LSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYS-------- 164

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002310517 232 alavknpchlNMAACLIKLKRFDEAIAQCTIVLSEDENNVKALFRRGKARAELGQTESAREDFLKA---KKYSPEDKE-- 306
Cdd:TIGR00990 165 ----------NRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASciiDGFRNEQSAqa 234

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1002310517 307 IQRELRSLAEQ--DKALYQKQKEL--------YKGLFGPRPEP 339
Cdd:TIGR00990 235 VERLLKKFAESkaKEILETKPENLpsvtfvgnYLQSFRPKPRP 277
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 241-304 2.95e-05

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 45.31  E-value: 2.95e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1002310517 241 LNMAACLIKLKRFDEAIAQCTIVLSEDENNVKALFRRGKARAELGQTESAREDFLKAKKYSPED 304
Cdd:cd24142     4 LEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDG 67
TPR_19 pfam14559
Tetratricopeptide repeat;
251-314 7.71e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 34.48  E-value: 7.71e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1002310517 251 KRFDEAIAQCTIVLSEDENNVKALFRRGKARAELGQTESAREDFLKAKKYSPEDKEIQRELRSL 314
Cdd:pfam14559   2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 239-270 8.43e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 33.57  E-value: 8.43e-03
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1002310517  239 CHLNMAACLIKLKRFDEAIAQCTIVLSEDENN 270
Cdd:smart00028   3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
 
Name Accession Description Interval E-value
FKBP_C pfam00254
FKBP-type peptidyl-prolyl cis-trans isomerase;
69-163 2.55e-16

FKBP-type peptidyl-prolyl cis-trans isomerase;


Pssm-ID: 459735  Cd Length: 94  Bit Score: 73.38  E-value: 2.55e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002310517  69 KKPSRFATCFVHYRAWVQGSShKFEDTWQEQHSIELVLGKEKKeMTGLGIGVSNMRSGERALLHVNWELGYGKEGSfSFP 148
Cdd:pfam00254   3 EKAKKGDRVTVHYTGTLEDGT-VFDSSYDRGKPFEFTLGSGQV-IPGWDEGLVGMKVGEKRKLTIPPELAYGEEGL-AGP 79

                          90
                  ....*....|....*
gi 1002310517 149 NVPPMADLVYEVELI 163
Cdd:pfam00254  80 VIPPNATLVFEVELL 94
FkpA COG0545
FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein ...
 61-165 4.73e-16

FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440311 [Multi-domain]  Cd Length: 104  Bit Score: 72.91  E-value: 4.73e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002310517  61 QVIKEGHGKKPSRFATCFVHYRAW-VQGSshKFEDTWQEQHSIELVLGKEKkEMTGLGIGVSNMRSGERALLHVNWELGY 139
Cdd:COG0545     4 KVLKEGTGAKPKAGDTVTVHYTGTlLDGT--VFDSSYDRGEPATFPLGVGQ-VIPGWDEGLQGMKVGGKRRLVIPPELAY 80

                          90       100
                  ....*....|....*....|....*.
gi 1002310517 140 GKEGsfSFPNVPPMADLVYEVELIGF 165
Cdd:COG0545    81 GERG--AGGVIPPNSTLVFEVELLDV 104
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
193-338 2.62e-13

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 68.40  E-value: 2.62e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002310517 193 GNEYFKEKKFEEAMQQYEMAIAYMGDdfmfqlfgkyrdMALAvknpcHLNMAACLIKLKRFDEAIAQCTIVLSEDENNVK 272
Cdd:COG4785    80 GVAYDSLGDYDLAIADFDQALELDPD------------LAEA-----YNNRGLAYLLLGDYDAALEDFDRALELDPDYAY 142

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1002310517 273 ALFRRGKARAELGQTESAREDFLKAKKYSPEDKEiQRELRSLAEQDKAlYQKQKELYKGLFGPRPE 338
Cdd:COG4785   143 AYLNRGIALYYLGRYELAIADLEKALELDPNDPE-RALWLYLAERKLD-PEKALALLLEDWATAYL 206
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
193-332 2.34e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 66.18  E-value: 2.34e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002310517 193 GNEYFKEKKFEEAMQQYEMAIAYMGDDFmfqlfgkyrdmalavknPCHLNMAACLIKLKRFDEAIAQCTIVLSEDENNVK 272
Cdd:COG0457    49 GLAYLRLGRYEEALADYEQALELDPDDA-----------------EALNNLGLALQALGRYEEALEDYDKALELDPDDAE 111

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1002310517 273 ALFRRGKARAELGQTESAREDFLKAKKYSPEDKEIQREL----RSLAEQDKALYQKQKELYKGL 332
Cdd:COG0457   112 ALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLgialEKLGRYEEALELLEKLEAAAL 175
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
193-321 4.58e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 65.41  E-value: 4.58e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002310517 193 GNEYFKEKKFEEAMQQYEMAIAymgddfmfqlfgKYRDMALAvknpcHLNMAACLIKLKRFDEAIAQCTIVLSEDENNVK 272
Cdd:COG0457    15 GLAYRRLGRYEEAIEDYEKALE------------LDPDDAEA-----LYNLGLAYLRLGRYEEALADYEQALELDPDDAE 77

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1002310517 273 ALFRRGKARAELGQTESAREDFLKAKKYSPEDKEIQREL----RSLAEQDKAL 321
Cdd:COG0457    78 ALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLglalLELGRYDEAI 130
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 193-308 8.85e-12

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 66.56  E-value: 8.85e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002310517 193 GNEYFKEKKFEEAMQQYEMAIAYMGDDFMFqlfgkyrdmalavknpcHLNMAACLIKLKRFDEAIAQCTIVLSEDENNVK 272
Cdd:COG3914   119 GNLLLALGRLEEALAALRRALALNPDFAEA-----------------YLNLGEALRRLGRLEEAIAALRRALELDPDNAE 181

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1002310517 273 ALFRRGKARAELGQTESAREDFLKAKKYSPEDKEIQ 308
Cdd:COG3914   182 ALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAH 217
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 193-316 2.01e-11

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 60.79  E-value: 2.01e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002310517 193 GNEYFKEKKFEEAMQQYEMAIAYMGDDfmfqlfgkyrdmALAvknpcHLNMAACLIKLKRFDEAIAQCTIVLSEDENNVK 272
Cdd:COG4235    24 GRAYLRLGRYDEALAAYEKALRLDPDN------------ADA-----LLDLAEALLAAGDTEEAEELLERALALDPDNPE 86

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1002310517 273 ALFRRGKARAELGQTESAREDFLKAKKYSPEDKEIQRELRSLAE 316
Cdd:COG4235    87 ALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASIAE 130
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 193-304 2.91e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 54.81  E-value: 2.91e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002310517 193 GNEYFKEKKFEEAMQQYEMAIAYMGDDFMFqlfgkyrdmalavknpcHLNMAACLIKLKRFDEAIAQCTIVLSEDENNVK 272
Cdd:COG4783    45 GEILLQLGDLDEAIVLLHEALELDPDEPEA-----------------RLNLGLALLKAGDYDEALALLEKALKLDPEHPE 107

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1002310517 273 ALFRRGKARAELGQTESAREDFLKAKKYSPED 304
Cdd:COG4783   108 AYLRLARAYRALGRPDEAIAALEKALELDPDD 139
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
196-303 3.53e-09

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 53.64  E-value: 3.53e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002310517 196 YFKEKKFEEAMQQYEMAIAYMGDDFmfqlfgkyrdmalavknPCHLNMAACLIKLKRFDEAIaQCTIVLSEDENNVKALF 275
Cdd:COG3063     2 YLKLGDLEEAEEYYEKALELDPDNA-----------------DALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALL 63

                          90       100
                  ....*....|....*....|....*...
gi 1002310517 276 RRGKARAELGQTESAREDFLKAKKYSPE 303
Cdd:COG3063    64 NLAELLLELGDYDEALAYLERALELDPS 91
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 196-317 3.81e-09

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 57.05  E-value: 3.81e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002310517 196 YFKEKKFEEAMQQYEMAIAYMGDDFMFqlfgkyrdmalavknpcHLNMAACLIKLKRFDEAIAQCTIVLSEDENNVKALF 275
Cdd:COG2956   120 YEQEGDWEKAIEVLERLLKLGPENAHA-----------------YCELAELYLEQGDYDEAIEALEKALKLDPDCARALL 182

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1002310517 276 RRGKARAELGQTESAREDFLKAKKYSPEDKEIQRELRSLAEQ 317
Cdd:COG2956   183 LLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEK 224
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 182-321 3.94e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 58.08  E-value: 3.94e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002310517 182 RIEAADRRKIEGNEYFKEKKFEEAMQQYEMAIAYMGDDFmfqlfgkyrdmalavknPCHLNMAACLIKLKRFDEAIAQCT 261
Cdd:COG3914    74 LLLLAALLELAALLLQALGRYEEALALYRRALALNPDNA-----------------EALFNLGNLLLALGRLEEALAALR 136

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1002310517 262 IVLSEDENNVKALFRRGKARAELGQTESAREDFLKAKKYSPEDKEIQREL----RSLAEQDKAL 321
Cdd:COG3914   137 RALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLgnalQDLGRLEEAI 200
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
239-324 4.80e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 56.55  E-value: 4.80e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002310517 239 CHLNMAACLIKLKRFDEAIAQCTIVLSEDENNVKALFRRGKARAELGQTESAREDFLKAKKYSPEDKEIQREL----RSL 314
Cdd:COG0457    10 AYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLglalQAL 89

                          90
                  ....*....|..
gi 1002310517 315 AEQDKAL--YQK 324
Cdd:COG0457    90 GRYEEALedYDK 101
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 195-314 1.06e-08

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 52.69  E-value: 1.06e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002310517 195 EYFKEKKFEEAMQQYEMAIAYMGDDfmfqlfgKYRDMAlavknpcHLNMAACLIKLKRFDEAIAQCTIVLSEDENNVK-- 272
Cdd:COG1729     2 ALLKAGDYDEAIAAFKAFLKRYPNS-------PLAPDA-------LYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKap 67

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1002310517 273 -ALFRRGKARAELGQTESAREDFLK-AKKY--SPEDKEIQRELRSL 314
Cdd:COG1729    68 dALLKLGLSYLELGDYDKARATLEElIKKYpdSEAAKEARARLARL 113
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 152-302 1.72e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 53.04  E-value: 1.72e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002310517 152 PMADLVYEVELIGFDDVKEGKARSDMTVEERIEAADRRKIEGNEYFKEKKFEEAMQQYEMAIAYMGDDFMFqlfgkyrdm 231
Cdd:COG5010    20 LRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPEL--------- 90

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1002310517 232 alavknpcHLNMAACLIKLKRFDEAIAQCTIVLSEDENNVKALFRRGKARAELGQTESAREDFLKAKKYSP 302
Cdd:COG5010    91 --------YYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 245-328 3.96e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 52.27  E-value: 3.96e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002310517 245 ACLIKLKRFDEAIAQCTIVLSEDENNVKALFRRGKARAELGQTESAREDFLKAKKYSPEDKEIQREL----RSLAEQDKA 320
Cdd:COG5010    62 NLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLaallLSLGQDDEA 141


                  ....*...
gi 1002310517 321 LYQKQKEL 328
Cdd:COG5010   142 KAALQRAL 149
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 184-329 1.07e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 50.58  E-value: 1.07e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002310517 184 EAADRRKIEGNEYFKEKKFEEAMQQYEMAIAYMGDDFMFqlfgkyrdmalavknpcHLNMAACLIKLKRFDEAIAQCTIV 263
Cdd:COG4783     2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEA-----------------FALLGEILLQLGDLDEAIVLLHEA 64

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1002310517 264 LSEDENNVKALFRRGKARAELGQTESAREDFLKAKKYSPEDKEIQREL----RSLAEQDKAL--YQKQKELY 329
Cdd:COG4783    65 LELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLarayRALGRPDEAIaaLEKALELD 136
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 193-330 6.85e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 50.11  E-value: 6.85e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002310517 193 GNEYFKEKKFEEAMQQYEMAIAYMGDDFmfqlfgkyrdmalavknPCHLNMAACLIKLKRFDEAIAQCTIVLSEDENNVK 272
Cdd:COG2956    83 AQDYLKAGLLDRAEELLEKLLELDPDDA-----------------EALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAH 145

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1002310517 273 ALFRRGKARAELGQTESAREDFLKAKKYSPEDKEIQRELRSLAEQDKAlYQKQKELYK 330
Cdd:COG2956   146 AYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGD-YEEAIAALE 202
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 240-330 9.67e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 47.88  E-value: 9.67e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002310517 240 HLNMAACLIKLKRFDEAIAQCTIVLSEDENNVKALFRRGKARAELGQTESAREDFLKAKKYSPEDKEIQREL-RSLAEQD 318
Cdd:COG4783     7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLgLALLKAG 86

                          90
                  ....*....|..
gi 1002310517 319 KalYQKQKELYK 330
Cdd:COG4783    87 D--YDEALALLE 96
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 193-330 2.13e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 48.57  E-value: 2.13e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002310517 193 GNEYFKEKKFEEAMQQYEMAIAYMGDdfmfqlfgkyRDMALavknpchLNMAACLIKLKRFDEAIAQCTIVLSEDENNVK 272
Cdd:COG2956    49 GNLYRRRGEYDRAIRIHQKLLERDPD----------RAEAL-------LELAQDYLKAGLLDRAEELLEKLLELDPDDAE 111

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1002310517 273 ALFRRGKARAELGQTESAREDFLKAKKYSPEDKEIQRELRSLAEQDKAlYQKQKELYK 330
Cdd:COG2956   112 ALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGD-YDEAIEALE 168
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 152-339 2.89e-06

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 49.21  E-value: 2.89e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002310517 152 PMADLVYEVELIGFDDvKEGKARsdMTVEERIEAADRRKIEGNEYFKEKKFEEAMQQYEMAIAYMGDDFMFQlfgkyrdm 231
Cdd:TIGR00990  96 PKNAPVEPADELPEID-ESSVAN--LSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYS-------- 164

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002310517 232 alavknpchlNMAACLIKLKRFDEAIAQCTIVLSEDENNVKALFRRGKARAELGQTESAREDFLKA---KKYSPEDKE-- 306
Cdd:TIGR00990 165 ----------NRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASciiDGFRNEQSAqa 234

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1002310517 307 IQRELRSLAEQ--DKALYQKQKEL--------YKGLFGPRPEP 339
Cdd:TIGR00990 235 VERLLKKFAESkaKEILETKPENLpsvtfvgnYLQSFRPKPRP 277
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 183-330 4.45e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 47.80  E-value: 4.45e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002310517 183 IEAADRRKIEGNEYFKEKKFEEAMQQYEMAIAYMGDDFmfqlfgkyrdmalavknPCHLNMAACLIKLKRFDEAIAQCTI 262
Cdd:COG2956     5 VAAALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETV-----------------EAHLALGNLYRRRGEYDRAIRIHQK 67

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1002310517 263 VLSEDENNVKALFRRGKARAELGQTESAREDFLKAKKYSPEDKEIQRELRSLAEQDKAlYQKQKELYK 330
Cdd:COG2956    68 LLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGD-WEKAIEVLE 134
YfgM COG2976
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal ...
 194-312 2.03e-05

Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms];


Pssm-ID: 442215 [Multi-domain]  Cd Length: 207  Bit Score: 44.85  E-value: 2.03e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002310517 194 NEYFKEKKFEEAMQQYEMAIAYMGDDFmfqlfgkYRDMAlavknpcHLNMAACLIKLKRFDEAIAQctivLSEDENNV-K 272
Cdd:COG2976    98 KAAVDAGDLDKAAAQLQWVLDNAKDPA-------LKALA-------RLRLARVLLAQKKYDEALAT----LDAVKPEAfA 159

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1002310517 273 ALF--RRGKARAELGQTESAREDFLKAKKYSPEDKEIQRELR 312
Cdd:COG2976   160 ALYaeLRGDILLAQGDKAEARAAYQKALAALPEDAPLRQLLQ 201
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 241-304 2.95e-05

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 45.31  E-value: 2.95e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1002310517 241 LNMAACLIKLKRFDEAIAQCTIVLSEDENNVKALFRRGKARAELGQTESAREDFLKAKKYSPED 304
Cdd:cd24142     4 LEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDG 67
LcrH_SycD TIGR02552
type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in ...
 203-317 1.64e-04

type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.


Pssm-ID: 274197 [Multi-domain]  Cd Length: 135  Bit Score: 41.13  E-value: 1.64e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002310517 203 EEAMQQ-YEMAiaymgddfmFQLF--GKYRDMA-----LAVKNPC----HLNMAACLIKLKRFDEAIAQCTIVLSEDENN 270
Cdd:TIGR02552  14 SEQLEQiYALA---------YNLYqqGRYDEALklfqlLAAYDPYnsryWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1002310517 271 VKALFRRGKARAELGQTESAREDF---LKAKKYSPEDKEIQRELRSLAEQ 317
Cdd:TIGR02552  85 PRPYFHAAECLLALGEPESALKALdlaIEICGENPEYSELKERAEAMLES 134
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 240-332 2.29e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 40.76  E-value: 2.29e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002310517 240 HLNMAACLIKLKRFDEAIAQCTIVLSEDENNVKALFRRGKARAELGQTESAREDFLKAKKYSPEDKEIQREL-RSLAEQD 318
Cdd:COG4235    20 WLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLgLAAFQQG 99

                          90
                  ....*....|....
gi 1002310517 319 KalYQKQKELYKGL 332
Cdd:COG4235   100 D--YAEAIAAWQKL 111
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
178-302 2.56e-04

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 42.18  E-value: 2.56e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002310517 178 TVEERIEAADrrkiegnEYFKEKKFEEAMQQYEMAIAymgddfmfqlfGKYR-DMALAVKnpchlnMAACLIKLKRFDEA 256
Cdd:COG4700    88 TVQNRVRLAD-------ALLELGRYDEAIELYEEALT-----------GIFAdDPHILLG------LAQALFELGRYAEA 143

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1002310517 257 IAQCTIVLSEDE--NNVKALFRRGKARAELGQTESAREDFLKAKKYSP 302
Cdd:COG4700   144 LETLEKLIAKNPdfKSSDAHLLYARALEALGDLEAAEAELEALARRYS 191
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 243-304 2.76e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 43.15  E-value: 2.76e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1002310517 243 MAACLIKLKRFDEAIAQCTIVLSEDENNVKALFRRGKARAELGQTESAREDFLKAKKYSPED 304
Cdd:TIGR02917 335 LASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPEN 396
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
246-311 4.76e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 39.00  E-value: 4.76e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1002310517 246 CLIKLKRFDEAIAQCTIVLSEDENNVKALFRRGKARAELGQTESAREdFLKAKKYSPEDKEIQREL 311
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNL 65
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 255-326 7.76e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 39.22  E-value: 7.76e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1002310517 255 EAIAQCTIVLSEDENNVKALFRRGKARAELGQTESAREDFLKAKKYSPEDKEIqreLRSLAEqdkALYQKQK 326
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADA---LLDLAE---ALLAAGD 66
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 166-303 9.57e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 41.22  E-value: 9.57e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002310517 166 DDVKEGKARSDMTVEERIEAADRRKIEGNEYFKEKKFEEAMQQYEMAIAymgddfmfqlfgkyrdmaLAVKNP-CHLNMA 244
Cdd:TIGR02917 173 NRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIA------------------LRPNNIaVLLALA 234

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1002310517 245 ACLIKLKRFDEAIAQCTIVLSEDENNVKALFRRGKARAELGQTESAREDFLKAKKYSPE 303
Cdd:TIGR02917 235 TILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPE 293
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 247-327 2.30e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 37.28  E-value: 2.30e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002310517 247 LIKLKRFDEAIAQCTIVLS---EDENNVKALFRRGKARAELGQTESAREDFLKAKKYSPEDKEIQRELRSLAEqdkaLYQ 323
Cdd:COG1729     3 LLKAGDYDEAIAAFKAFLKrypNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALLKLGL----SYL 78


                  ....
gi 1002310517 324 KQKE 327
Cdd:COG1729    79 ELGD 82
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
227-304 5.74e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 37.97  E-value: 5.74e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1002310517 227 KYRDMALAVKNPCHLNMAACLIKLKRFDEAIAQCTIVLSEDENNVKALFRRGKARAELGQTESAREDFLKAKKYSPED 304
Cdd:COG4785    63 IDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDY 140
TPR_19 pfam14559
Tetratricopeptide repeat;
251-314 7.71e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 34.48  E-value: 7.71e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1002310517 251 KRFDEAIAQCTIVLSEDENNVKALFRRGKARAELGQTESAREDFLKAKKYSPEDKEIQRELRSL 314
Cdd:pfam14559   2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 239-270 8.43e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 33.57  E-value: 8.43e-03
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1002310517  239 CHLNMAACLIKLKRFDEAIAQCTIVLSEDENN 270
Cdd:smart00028   3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
243-307 9.56e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 37.20  E-value: 9.56e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1002310517 243 MAACLIKLKRFDEAIAqctivlseDENNVKALFRRGKARAELGQTESAREDFLKAKKYSPEDKEI 307
Cdd:COG4785    53 LAAAALAAERIDRALA--------LPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEA 109
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 271-303 9.75e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 33.65  E-value: 9.75e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1002310517 271 VKALFRRGKARAELGQTESAREDFLKAKKYSPE 303
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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