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Conserved domains on  [gi|1002233146|ref|XP_015619942|]
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uncharacterized protein [Oryza sativa Japonica Group]

Protein Classification

DRY_EERY and SWAP domain-containing protein( domain architecture ID 10560971)

DRY_EERY and SWAP domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DRY_EERY pfam09750
Alternative splicing regulator; This entry represents the conserved N-terminal region of SWAP ...
 3-123 6.90e-28

Alternative splicing regulator; This entry represents the conserved N-terminal region of SWAP (suppressor-of-white-apricot protein) proteins. This region contains two highly conserved motifs, viz: DRY and EERY, which appear to be the sites for alternative splicing of exons 2 and 3 of the SWAP mRNA. These proteins are thus thought to be involved in auto-regulation of pre-mRNA splicing. Most family members are associated with two Surp domains pfam01805 and an Arginine- serine-rich binding region towards the C-terminus.


:

Pssm-ID: 462881  Cd Length: 129  Bit Score: 109.33  E-value: 6.90e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002233146   3 LEIVGRHALLFDDDPTAEVVNSGGSLVPWAavGADDLLLDRHDVRHLLDRVPPRPrRSYSAALLSAPSLDGVSEAELDRE 82
Cdd:pfam09750   1 LQVFGRRCKLFRDDAIAAAAESGKHLVPWQ--GDPDLLIDRFDVRALLDDIPEYE-AGRSARLSELTSEEEEEERECNYE 77

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1002233146  83 RFLDLTADDFGGEGS-----------QDAVSSGNGTDTGWADYNSVPFSYGS 123
Cdd:pfam09750  78 RYRDLIKNEFEGVSEeeelkriyqeeQFGAKRLSAAKKSSGSYAAIGFSYDD 129
SWAP smart00648
Suppressor-of-White-APricot splicing regulator; domain present in regulators which are ...
 158-210 9.84e-15

Suppressor-of-White-APricot splicing regulator; domain present in regulators which are responsible for pre-mRNA splicing processes


:

Pssm-ID: 197818 [Multi-domain]  Cd Length: 54  Bit Score: 69.15  E-value: 9.84e-15
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1002233146  158 HQIIARTALFVSEHGGQSEIVLRVKQGSNPTFGFLMPDHHLHSYFRYLVDHPQ 210
Cdd:smart00648   1 LDIIDKTAQFVARNGPEFEAKLMERERNNPQFDFLKPNDPYHAYYRKKLAEYR 53
SWAP smart00648
Suppressor-of-White-APricot splicing regulator; domain present in regulators which are ...
 358-411 6.79e-14

Suppressor-of-White-APricot splicing regulator; domain present in regulators which are responsible for pre-mRNA splicing processes


:

Pssm-ID: 197818 [Multi-domain]  Cd Length: 54  Bit Score: 66.84  E-value: 6.79e-14
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1002233146  358 KRTMEKIVEFIIRNGKEFEGKLIEQDRTTGRFPFLLPSNPYHPYYLKLLEETQE 411
Cdd:smart00648   1 LDIIDKTAQFVARNGPEFEAKLMERERNNPQFDFLKPNDPYHAYYRKKLAEYRQ 54
 
Name Accession Description Interval E-value
DRY_EERY pfam09750
Alternative splicing regulator; This entry represents the conserved N-terminal region of SWAP ...
 3-123 6.90e-28

Alternative splicing regulator; This entry represents the conserved N-terminal region of SWAP (suppressor-of-white-apricot protein) proteins. This region contains two highly conserved motifs, viz: DRY and EERY, which appear to be the sites for alternative splicing of exons 2 and 3 of the SWAP mRNA. These proteins are thus thought to be involved in auto-regulation of pre-mRNA splicing. Most family members are associated with two Surp domains pfam01805 and an Arginine- serine-rich binding region towards the C-terminus.


Pssm-ID: 462881  Cd Length: 129  Bit Score: 109.33  E-value: 6.90e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002233146   3 LEIVGRHALLFDDDPTAEVVNSGGSLVPWAavGADDLLLDRHDVRHLLDRVPPRPrRSYSAALLSAPSLDGVSEAELDRE 82
Cdd:pfam09750   1 LQVFGRRCKLFRDDAIAAAAESGKHLVPWQ--GDPDLLIDRFDVRALLDDIPEYE-AGRSARLSELTSEEEEEERECNYE 77

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1002233146  83 RFLDLTADDFGGEGS-----------QDAVSSGNGTDTGWADYNSVPFSYGS 123
Cdd:pfam09750  78 RYRDLIKNEFEGVSEeeelkriyqeeQFGAKRLSAAKKSSGSYAAIGFSYDD 129
SWAP smart00648
Suppressor-of-White-APricot splicing regulator; domain present in regulators which are ...
 158-210 9.84e-15

Suppressor-of-White-APricot splicing regulator; domain present in regulators which are responsible for pre-mRNA splicing processes


Pssm-ID: 197818 [Multi-domain]  Cd Length: 54  Bit Score: 69.15  E-value: 9.84e-15
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1002233146  158 HQIIARTALFVSEHGGQSEIVLRVKQGSNPTFGFLMPDHHLHSYFRYLVDHPQ 210
Cdd:smart00648   1 LDIIDKTAQFVARNGPEFEAKLMERERNNPQFDFLKPNDPYHAYYRKKLAEYR 53
SWAP smart00648
Suppressor-of-White-APricot splicing regulator; domain present in regulators which are ...
 358-411 6.79e-14

Suppressor-of-White-APricot splicing regulator; domain present in regulators which are responsible for pre-mRNA splicing processes


Pssm-ID: 197818 [Multi-domain]  Cd Length: 54  Bit Score: 66.84  E-value: 6.79e-14
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1002233146  358 KRTMEKIVEFIIRNGKEFEGKLIEQDRTTGRFPFLLPSNPYHPYYLKLLEETQE 411
Cdd:smart00648   1 LDIIDKTAQFVARNGPEFEAKLMERERNNPQFDFLKPNDPYHAYYRKKLAEYRQ 54
Surp pfam01805
Surp module; This domain is also known as the SWAP domain. SWAP stands for ...
 159-207 7.13e-13

Surp module; This domain is also known as the SWAP domain. SWAP stands for Suppressor-of-White-APricot. It has been suggested that these domains may be RNA binding.


Pssm-ID: 460339 [Multi-domain]  Cd Length: 52  Bit Score: 63.69  E-value: 7.13e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1002233146 159 QIIARTALFVSEHGGQSEIVLRVKQGSNPTFGFLMP-DHHLHSYFRYLVD 207
Cdd:pfam01805   1 DIIKKTAQFVARNGPEFEALLMEREERNPQFDFLFDpDDPLHAYYRWKLE 50
Surp pfam01805
Surp module; This domain is also known as the SWAP domain. SWAP stands for ...
 359-408 1.77e-11

Surp module; This domain is also known as the SWAP domain. SWAP stands for Suppressor-of-White-APricot. It has been suggested that these domains may be RNA binding.


Pssm-ID: 460339 [Multi-domain]  Cd Length: 52  Bit Score: 59.84  E-value: 1.77e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1002233146 359 RTMEKIVEFIIRNGKEFEGKLIEQDRTTGRFPFLLPSN-PYHPYYLKLLEE 408
Cdd:pfam01805   1 DIIKKTAQFVARNGPEFEALLMEREERNPQFDFLFDPDdPLHAYYRWKLEE 51
 
Name Accession Description Interval E-value
DRY_EERY pfam09750
Alternative splicing regulator; This entry represents the conserved N-terminal region of SWAP ...
 3-123 6.90e-28

Alternative splicing regulator; This entry represents the conserved N-terminal region of SWAP (suppressor-of-white-apricot protein) proteins. This region contains two highly conserved motifs, viz: DRY and EERY, which appear to be the sites for alternative splicing of exons 2 and 3 of the SWAP mRNA. These proteins are thus thought to be involved in auto-regulation of pre-mRNA splicing. Most family members are associated with two Surp domains pfam01805 and an Arginine- serine-rich binding region towards the C-terminus.


Pssm-ID: 462881  Cd Length: 129  Bit Score: 109.33  E-value: 6.90e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002233146   3 LEIVGRHALLFDDDPTAEVVNSGGSLVPWAavGADDLLLDRHDVRHLLDRVPPRPrRSYSAALLSAPSLDGVSEAELDRE 82
Cdd:pfam09750   1 LQVFGRRCKLFRDDAIAAAAESGKHLVPWQ--GDPDLLIDRFDVRALLDDIPEYE-AGRSARLSELTSEEEEEERECNYE 77

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1002233146  83 RFLDLTADDFGGEGS-----------QDAVSSGNGTDTGWADYNSVPFSYGS 123
Cdd:pfam09750  78 RYRDLIKNEFEGVSEeeelkriyqeeQFGAKRLSAAKKSSGSYAAIGFSYDD 129
SWAP smart00648
Suppressor-of-White-APricot splicing regulator; domain present in regulators which are ...
 158-210 9.84e-15

Suppressor-of-White-APricot splicing regulator; domain present in regulators which are responsible for pre-mRNA splicing processes


Pssm-ID: 197818 [Multi-domain]  Cd Length: 54  Bit Score: 69.15  E-value: 9.84e-15
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1002233146  158 HQIIARTALFVSEHGGQSEIVLRVKQGSNPTFGFLMPDHHLHSYFRYLVDHPQ 210
Cdd:smart00648   1 LDIIDKTAQFVARNGPEFEAKLMERERNNPQFDFLKPNDPYHAYYRKKLAEYR 53
SWAP smart00648
Suppressor-of-White-APricot splicing regulator; domain present in regulators which are ...
 358-411 6.79e-14

Suppressor-of-White-APricot splicing regulator; domain present in regulators which are responsible for pre-mRNA splicing processes


Pssm-ID: 197818 [Multi-domain]  Cd Length: 54  Bit Score: 66.84  E-value: 6.79e-14
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1002233146  358 KRTMEKIVEFIIRNGKEFEGKLIEQDRTTGRFPFLLPSNPYHPYYLKLLEETQE 411
Cdd:smart00648   1 LDIIDKTAQFVARNGPEFEAKLMERERNNPQFDFLKPNDPYHAYYRKKLAEYRQ 54
Surp pfam01805
Surp module; This domain is also known as the SWAP domain. SWAP stands for ...
 159-207 7.13e-13

Surp module; This domain is also known as the SWAP domain. SWAP stands for Suppressor-of-White-APricot. It has been suggested that these domains may be RNA binding.


Pssm-ID: 460339 [Multi-domain]  Cd Length: 52  Bit Score: 63.69  E-value: 7.13e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1002233146 159 QIIARTALFVSEHGGQSEIVLRVKQGSNPTFGFLMP-DHHLHSYFRYLVD 207
Cdd:pfam01805   1 DIIKKTAQFVARNGPEFEALLMEREERNPQFDFLFDpDDPLHAYYRWKLE 50
Surp pfam01805
Surp module; This domain is also known as the SWAP domain. SWAP stands for ...
 359-408 1.77e-11

Surp module; This domain is also known as the SWAP domain. SWAP stands for Suppressor-of-White-APricot. It has been suggested that these domains may be RNA binding.


Pssm-ID: 460339 [Multi-domain]  Cd Length: 52  Bit Score: 59.84  E-value: 1.77e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1002233146 359 RTMEKIVEFIIRNGKEFEGKLIEQDRTTGRFPFLLPSN-PYHPYYLKLLEE 408
Cdd:pfam01805   1 DIIKKTAQFVARNGPEFEALLMEREERNPQFDFLFDPDdPLHAYYRWKLEE 51
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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