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transcription factor MYB59 [Oryza sativa Japonica Group]
SANT/Myb-like DNA-binding domain-containing protein( domain architecture ID 1000535)
SANT (SWI3, ADA2, N-CoR and TFIIIB)/Myb-like DNA-binding domain-containing protein may be involved in the regulation of gene expression
List of domain hits
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Name | Accession | Description | Interval | E-value | |||
PLN03212 super family | cl31985 | Transcription repressor MYB5; Provisional |
56-157 | 7.72e-41 | |||
Transcription repressor MYB5; Provisional The actual alignment was detected with superfamily member PLN03212: Pssm-ID: 178751 [Multi-domain] Cd Length: 249 Bit Score: 141.37 E-value: 7.72e-41
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Name | Accession | Description | Interval | E-value | |||
PLN03212 | PLN03212 | Transcription repressor MYB5; Provisional |
56-157 | 7.72e-41 | |||
Transcription repressor MYB5; Provisional Pssm-ID: 178751 [Multi-domain] Cd Length: 249 Bit Score: 141.37 E-value: 7.72e-41
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Myb_DNA-binding | pfam00249 | Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ... |
111-156 | 5.72e-16 | |||
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Pssm-ID: 459731 [Multi-domain] Cd Length: 46 Bit Score: 69.84 E-value: 5.72e-16
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REB1 | COG5147 | Myb superfamily proteins, including transcription factors and mRNA splicing factors ... |
58-152 | 4.62e-14 | |||
Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]; Pssm-ID: 227476 [Multi-domain] Cd Length: 512 Bit Score: 71.74 E-value: 4.62e-14
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SANT | smart00717 | SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains; |
111-157 | 3.04e-12 | |||
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains; Pssm-ID: 197842 [Multi-domain] Cd Length: 49 Bit Score: 59.93 E-value: 3.04e-12
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SANT | cd00167 | 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ... |
113-156 | 5.74e-12 | |||
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Pssm-ID: 238096 [Multi-domain] Cd Length: 45 Bit Score: 59.13 E-value: 5.74e-12
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Name | Accession | Description | Interval | E-value | |||
PLN03212 | PLN03212 | Transcription repressor MYB5; Provisional |
56-157 | 7.72e-41 | |||
Transcription repressor MYB5; Provisional Pssm-ID: 178751 [Multi-domain] Cd Length: 249 Bit Score: 141.37 E-value: 7.72e-41
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PLN03091 | PLN03091 | hypothetical protein; Provisional |
56-157 | 4.78e-38 | |||
hypothetical protein; Provisional Pssm-ID: 215570 [Multi-domain] Cd Length: 459 Bit Score: 138.96 E-value: 4.78e-38
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Myb_DNA-binding | pfam00249 | Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ... |
111-156 | 5.72e-16 | |||
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Pssm-ID: 459731 [Multi-domain] Cd Length: 46 Bit Score: 69.84 E-value: 5.72e-16
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REB1 | COG5147 | Myb superfamily proteins, including transcription factors and mRNA splicing factors ... |
58-152 | 4.62e-14 | |||
Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]; Pssm-ID: 227476 [Multi-domain] Cd Length: 512 Bit Score: 71.74 E-value: 4.62e-14
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SANT | smart00717 | SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains; |
111-157 | 3.04e-12 | |||
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains; Pssm-ID: 197842 [Multi-domain] Cd Length: 49 Bit Score: 59.93 E-value: 3.04e-12
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SANT | cd00167 | 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ... |
113-156 | 5.74e-12 | |||
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Pssm-ID: 238096 [Multi-domain] Cd Length: 45 Bit Score: 59.13 E-value: 5.74e-12
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SANT | smart00717 | SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains; |
58-107 | 7.18e-09 | |||
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains; Pssm-ID: 197842 [Multi-domain] Cd Length: 49 Bit Score: 50.69 E-value: 7.18e-09
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SANT | cd00167 | 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ... |
60-105 | 3.92e-08 | |||
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Pssm-ID: 238096 [Multi-domain] Cd Length: 45 Bit Score: 48.73 E-value: 3.92e-08
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Myb_DNA-bind_6 | pfam13921 | Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ... |
61-122 | 5.55e-06 | |||
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Pssm-ID: 372817 [Multi-domain] Cd Length: 60 Bit Score: 43.07 E-value: 5.55e-06
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Myb_DNA-bind_6 | pfam13921 | Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ... |
115-157 | 7.17e-06 | |||
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Pssm-ID: 372817 [Multi-domain] Cd Length: 60 Bit Score: 42.68 E-value: 7.17e-06
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Blast search parameters | ||||
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