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Conserved domains on  [gi|1443040019|ref|XP_015621186|]
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uncharacterized protein LOC4326258 isoform X2 [Oryza sativa Japonica Group]

Protein Classification

DUF4216 domain-containing protein( domain architecture ID 10341910)

DUF4216 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4218 super family cl16501
Domain of unknown function (DUF4218);
1-86 5.11e-47

Domain of unknown function (DUF4218);


The actual alignment was detected with superfamily member pfam13960:

Pssm-ID: 433607  Cd Length: 112  Bit Score: 156.47  E-value: 5.11e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443040019   1 MIFPPAFFDIVVHLAVHLPQQARLGGPVQYRWMFFIERFLGTLKGMVSNRAHPEGSIAEAYIMKECSTFCSMYLNGIETR 80
Cdd:pfam13960  27 KIFPPSFFDIMVHLIVHLPTEAKLAGPVHYRNMYPVERYLCRLKSYVRNKAHPEGSIAEAYLADECLTFCSRYLEGIDTK 106


                  ....*.
gi 1443040019  81 FNREER 86
Cdd:pfam13960 107 FNRPRR 112
DUF4216 super family cl16495
Domain of unknown function (DUF4216); This DUF is sometimes found at the C-terminal end of ...
 248-317 2.04e-22

Domain of unknown function (DUF4216); This DUF is sometimes found at the C-terminal end of proteins carrying a Transposase_21 domain, pfam02992.


The actual alignment was detected with superfamily member pfam13952:

Pssm-ID: 464054  Cd Length: 72  Bit Score: 90.06  E-value: 2.04e-22
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1443040019 248 LDYPNDRQVALFMCDWYNLERNKPVIIDN-DFVSINISKRWYTDDNYVLASQVKQVFYVPDTKlKGNWQVV 317
Cdd:pfam13952   3 LNYNGKKKVVLFKCDWFDPDRKVGVKIDKfGFTSVNFSRRLYKDEPFILASQATQVFYVPDPL-NRDWSVV 72
 
Name Accession Description Interval E-value
DUF4218 pfam13960
Domain of unknown function (DUF4218);
1-86 5.11e-47

Domain of unknown function (DUF4218);


Pssm-ID: 433607  Cd Length: 112  Bit Score: 156.47  E-value: 5.11e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443040019   1 MIFPPAFFDIVVHLAVHLPQQARLGGPVQYRWMFFIERFLGTLKGMVSNRAHPEGSIAEAYIMKECSTFCSMYLNGIETR 80
Cdd:pfam13960  27 KIFPPSFFDIMVHLIVHLPTEAKLAGPVHYRNMYPVERYLCRLKSYVRNKAHPEGSIAEAYLADECLTFCSRYLEGIDTK 106


                  ....*.
gi 1443040019  81 FNREER 86
Cdd:pfam13960 107 FNRPRR 112
DUF4216 pfam13952
Domain of unknown function (DUF4216); This DUF is sometimes found at the C-terminal end of ...
 248-317 2.04e-22

Domain of unknown function (DUF4216); This DUF is sometimes found at the C-terminal end of proteins carrying a Transposase_21 domain, pfam02992.


Pssm-ID: 464054  Cd Length: 72  Bit Score: 90.06  E-value: 2.04e-22
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1443040019 248 LDYPNDRQVALFMCDWYNLERNKPVIIDN-DFVSINISKRWYTDDNYVLASQVKQVFYVPDTKlKGNWQVV 317
Cdd:pfam13952   3 LNYNGKKKVVLFKCDWFDPDRKVGVKIDKfGFTSVNFSRRLYKDEPFILASQATQVFYVPDPL-NRDWSVV 72
 
Name Accession Description Interval E-value
DUF4218 pfam13960
Domain of unknown function (DUF4218);
1-86 5.11e-47

Domain of unknown function (DUF4218);


Pssm-ID: 433607  Cd Length: 112  Bit Score: 156.47  E-value: 5.11e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443040019   1 MIFPPAFFDIVVHLAVHLPQQARLGGPVQYRWMFFIERFLGTLKGMVSNRAHPEGSIAEAYIMKECSTFCSMYLNGIETR 80
Cdd:pfam13960  27 KIFPPSFFDIMVHLIVHLPTEAKLAGPVHYRNMYPVERYLCRLKSYVRNKAHPEGSIAEAYLADECLTFCSRYLEGIDTK 106


                  ....*.
gi 1443040019  81 FNREER 86
Cdd:pfam13960 107 FNRPRR 112
DUF4216 pfam13952
Domain of unknown function (DUF4216); This DUF is sometimes found at the C-terminal end of ...
 248-317 2.04e-22

Domain of unknown function (DUF4216); This DUF is sometimes found at the C-terminal end of proteins carrying a Transposase_21 domain, pfam02992.


Pssm-ID: 464054  Cd Length: 72  Bit Score: 90.06  E-value: 2.04e-22
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1443040019 248 LDYPNDRQVALFMCDWYNLERNKPVIIDN-DFVSINISKRWYTDDNYVLASQVKQVFYVPDTKlKGNWQVV 317
Cdd:pfam13952   3 LNYNGKKKVVLFKCDWFDPDRKVGVKIDKfGFTSVNFSRRLYKDEPFILASQATQVFYVPDPL-NRDWSVV 72
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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