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Conserved domains on  [gi|1002234942|ref|XP_015621680|]
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uncharacterized protein LOC4326733 [Oryza sativa Japonica Group]

Protein Classification

DUF4602 domain-containing protein( domain architecture ID 141151)

DUF4602 domain-containing protein similar to Schizosaccharomyces pombe protein C3F10.08c

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4602 super family cl21213
Domain of unknown function (DUF4602); This family of proteins is found in eukaryotes. Proteins ...
 80-160 5.21e-06

Domain of unknown function (DUF4602); This family of proteins is found in eukaryotes. Proteins in this family are typically between 173 and 294 amino acids in length. This family includes Human C1orf131.


The actual alignment was detected with superfamily member pfam15375:

Pssm-ID: 464683  Cd Length: 111  Bit Score: 43.82  E-value: 5.21e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002234942  80 KLLKDVELFGASTW--KERKQLENRKVVQLGGKAIKKHRTPLSVSKPAMKNQKKREEKKAEEERLLGIFRKRDSKNSKAQ 157
Cdd:pfam15375  25 KARKEVHNFGISGLdkKNKRKAEAERAIKLGAKPPKKPYVPYKILQGMKKKQKEREEERKQEAKESGVQTGKKKSKKKKK 104


                  ...
gi 1002234942 158 KTR 160
Cdd:pfam15375 105 KRK 107
 
Name Accession Description Interval E-value
DUF4602 pfam15375
Domain of unknown function (DUF4602); This family of proteins is found in eukaryotes. Proteins ...
 80-160 5.21e-06

Domain of unknown function (DUF4602); This family of proteins is found in eukaryotes. Proteins in this family are typically between 173 and 294 amino acids in length. This family includes Human C1orf131.


Pssm-ID: 464683  Cd Length: 111  Bit Score: 43.82  E-value: 5.21e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002234942  80 KLLKDVELFGASTW--KERKQLENRKVVQLGGKAIKKHRTPLSVSKPAMKNQKKREEKKAEEERLLGIFRKRDSKNSKAQ 157
Cdd:pfam15375  25 KARKEVHNFGISGLdkKNKRKAEAERAIKLGAKPPKKPYVPYKILQGMKKKQKEREEERKQEAKESGVQTGKKKSKKKKK 104


                  ...
gi 1002234942 158 KTR 160
Cdd:pfam15375 105 KRK 107
 
Name Accession Description Interval E-value
DUF4602 pfam15375
Domain of unknown function (DUF4602); This family of proteins is found in eukaryotes. Proteins ...
 80-160 5.21e-06

Domain of unknown function (DUF4602); This family of proteins is found in eukaryotes. Proteins in this family are typically between 173 and 294 amino acids in length. This family includes Human C1orf131.


Pssm-ID: 464683  Cd Length: 111  Bit Score: 43.82  E-value: 5.21e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002234942  80 KLLKDVELFGASTW--KERKQLENRKVVQLGGKAIKKHRTPLSVSKPAMKNQKKREEKKAEEERLLGIFRKRDSKNSKAQ 157
Cdd:pfam15375  25 KARKEVHNFGISGLdkKNKRKAEAERAIKLGAKPPKKPYVPYKILQGMKKKQKEREEERKQEAKESGVQTGKKKSKKKKK 104


                  ...
gi 1002234942 158 KTR 160
Cdd:pfam15375 105 KRK 107
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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