![](files/infoQ.gif)
ribulose bisphosphate carboxylase small chain clone 512 [Oryza sativa Japonica Group]
List of domain hits
![](files/help.png)
Name | Accession | Description | Interval | E-value | |||
PLN02289 super family | cl42969 | ribulose-bisphosphate carboxylase small chain |
42-170 | 7.11e-68 | |||
ribulose-bisphosphate carboxylase small chain The actual alignment was detected with superfamily member PLN02289: Pssm-ID: 215163 [Multi-domain] Cd Length: 176 Bit Score: 204.71 E-value: 7.11e-68
|
|||||||
Name | Accession | Description | Interval | E-value | |||
PLN02289 | PLN02289 | ribulose-bisphosphate carboxylase small chain |
42-170 | 7.11e-68 | |||
ribulose-bisphosphate carboxylase small chain Pssm-ID: 215163 [Multi-domain] Cd Length: 176 Bit Score: 204.71 E-value: 7.11e-68
|
|||||||
RuBisCO_small | cd03527 | Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a ... |
60-169 | 4.42e-60 | |||
Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits. Pssm-ID: 239603 Cd Length: 99 Bit Score: 182.07 E-value: 4.42e-60
|
|||||||
RuBisCO_small | pfam00101 | Ribulose bisphosphate carboxylase, small chain; |
62-169 | 4.27e-54 | |||
Ribulose bisphosphate carboxylase, small chain; Pssm-ID: 425465 Cd Length: 97 Bit Score: 166.90 E-value: 4.27e-54
|
|||||||
RbcS | COG4451 | Ribulose bisphosphate carboxylase small subunit [Carbohydrate transport and metabolism]; |
58-170 | 2.97e-41 | |||
Ribulose bisphosphate carboxylase small subunit [Carbohydrate transport and metabolism]; Pssm-ID: 443549 Cd Length: 102 Bit Score: 134.56 E-value: 2.97e-41
|
|||||||
RuBisCO_small | smart00961 | Ribulose bisphosphate carboxylase, small chain; RuBisCO (ribulose-1,5-bisphosphate carboxylase ... |
61-169 | 1.13e-35 | |||
Ribulose bisphosphate carboxylase, small chain; RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) is a bifunctional enzyme that catalyses both the carboxylation and oxygenation of ribulose-1,5-bisphosphate (RuBP), thus fixing carbon dioxide as the first step of the Calvin cycle. RuBisCO is the major protein in the stroma of chloroplasts, and in higher plants exists as a complex of 8 large and 8 small subunits. The function of the small subunit is unknown. While the large subunit is coded for by a single gene, the small subunit is coded for by several different genes, which are distributed in a tissue specific manner. They are transcriptionally regulated by light receptor phytochrome. which results in RuBisCO being more abundant during the day when it is required. Pssm-ID: 198029 Cd Length: 96 Bit Score: 119.95 E-value: 1.13e-35
|
|||||||
Name | Accession | Description | Interval | E-value | |||
PLN02289 | PLN02289 | ribulose-bisphosphate carboxylase small chain |
42-170 | 7.11e-68 | |||
ribulose-bisphosphate carboxylase small chain Pssm-ID: 215163 [Multi-domain] Cd Length: 176 Bit Score: 204.71 E-value: 7.11e-68
|
|||||||
RuBisCO_small | cd03527 | Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a ... |
60-169 | 4.42e-60 | |||
Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits. Pssm-ID: 239603 Cd Length: 99 Bit Score: 182.07 E-value: 4.42e-60
|
|||||||
RuBisCO_small | pfam00101 | Ribulose bisphosphate carboxylase, small chain; |
62-169 | 4.27e-54 | |||
Ribulose bisphosphate carboxylase, small chain; Pssm-ID: 425465 Cd Length: 97 Bit Score: 166.90 E-value: 4.27e-54
|
|||||||
RbcS | COG4451 | Ribulose bisphosphate carboxylase small subunit [Carbohydrate transport and metabolism]; |
58-170 | 2.97e-41 | |||
Ribulose bisphosphate carboxylase small subunit [Carbohydrate transport and metabolism]; Pssm-ID: 443549 Cd Length: 102 Bit Score: 134.56 E-value: 2.97e-41
|
|||||||
RuBisCO_small | smart00961 | Ribulose bisphosphate carboxylase, small chain; RuBisCO (ribulose-1,5-bisphosphate carboxylase ... |
61-169 | 1.13e-35 | |||
Ribulose bisphosphate carboxylase, small chain; RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) is a bifunctional enzyme that catalyses both the carboxylation and oxygenation of ribulose-1,5-bisphosphate (RuBP), thus fixing carbon dioxide as the first step of the Calvin cycle. RuBisCO is the major protein in the stroma of chloroplasts, and in higher plants exists as a complex of 8 large and 8 small subunits. The function of the small subunit is unknown. While the large subunit is coded for by a single gene, the small subunit is coded for by several different genes, which are distributed in a tissue specific manner. They are transcriptionally regulated by light receptor phytochrome. which results in RuBisCO being more abundant during the day when it is required. Pssm-ID: 198029 Cd Length: 96 Bit Score: 119.95 E-value: 1.13e-35
|
|||||||
rbcS | CHL00130 | ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit; Reviewed |
60-169 | 1.03e-33 | |||
ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit; Reviewed Pssm-ID: 177052 Cd Length: 138 Bit Score: 116.40 E-value: 1.03e-33
|
|||||||
RuBisCO_small_like | cd00307 | Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit and related proteins. ... |
76-169 | 2.59e-17 | |||
Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit and related proteins. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits. This superfamily also contains specific proteins from cyanobacteria. CcmM plays a role in a CO2 concentrating mechanism, which cyanobacteria need to to overcome the low specificity of their Rubisco and fusions to Rubisco activase, a type of chaperone, which promotes and maintains the catalytic activity of Rubisco. CcmM contains an N-terminal carbonic anhydrase fused to four copies of the Rubisco-small subunit domain Pssm-ID: 238187 Cd Length: 84 Bit Score: 72.69 E-value: 2.59e-17
|
|||||||
Blast search parameters | ||||
|