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Conserved domains on  [gi|1002241059|ref|XP_015624822|]
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cell number regulator 2 isoform X2 [Oryza sativa Japonica Group]

Protein Classification

PLAC8 family protein( domain architecture ID 10520582)

PLAC8 family protein such as mammalian cornifelin, Arabidopsis plant cadmium resistance (PCR) proteins, and Zea mays cell number regulator proteins

Gene Ontology:  GO:0016020

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLAC8 pfam04749
PLAC8 family; This family includes the Placenta-specific gene 8 protein.
 10-108 5.23e-37

PLAC8 family; This family includes the Placenta-specific gene 8 protein.


:

Pssm-ID: 461417  Cd Length: 99  Bit Score: 122.05  E-value: 5.23e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002241059  10 WSTDLFDCFDDSSNCFMTWLCPCITFGQIAEIVDRGSSSCGTSGSLYALVFLVTGCSCIYSCIYRSKLRSQYGLQETPCP 89
Cdd:pfam04749   1 WSTGLFDCFSDCGTCLLGCCCPCVLFGRNAERLDRGNTSCLLAGFAAFCGLTGCGLGWIYSCLQRGKIREKYGIEGSPCG 80

                          90
                  ....*....|....*....
gi 1002241059  90 DCLVHLWCEPCALCQEYRE 108
Cdd:pfam04749  81 DCCVHCCCPCCALCQEYRE 99
 
Name Accession Description Interval E-value
PLAC8 pfam04749
PLAC8 family; This family includes the Placenta-specific gene 8 protein.
 10-108 5.23e-37

PLAC8 family; This family includes the Placenta-specific gene 8 protein.


Pssm-ID: 461417  Cd Length: 99  Bit Score: 122.05  E-value: 5.23e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002241059  10 WSTDLFDCFDDSSNCFMTWLCPCITFGQIAEIVDRGSSSCGTSGSLYALVFLVTGCSCIYSCIYRSKLRSQYGLQETPCP 89
Cdd:pfam04749   1 WSTGLFDCFSDCGTCLLGCCCPCVLFGRNAERLDRGNTSCLLAGFAAFCGLTGCGLGWIYSCLQRGKIREKYGIEGSPCG 80

                          90
                  ....*....|....*....
gi 1002241059  90 DCLVHLWCEPCALCQEYRE 108
Cdd:pfam04749  81 DCCVHCCCPCCALCQEYRE 99
A_thal_Cys_rich TIGR01571
uncharacterized Cys-rich domain; This model describes an uncharacterized domain of about 100 ...
 9-110 1.17e-32

uncharacterized Cys-rich domain; This model describes an uncharacterized domain of about 100 residues. It is common in plants but found also in Homo sapiens, Dictyostelium, and Leishmania; at least 12 distinct members are found in Arabidopsis. Most members of this family contain more than 10 per cent Cys, but no Cys residue is invariant across the family.


Pssm-ID: 273697  Cd Length: 104  Bit Score: 111.36  E-value: 1.17e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002241059   9 PWSTDLFDCFDDSSNCFMTWLCPCITFGQIAEIVDRGSSSCGTSGSLYALVFLVTGCSCIYSCIYRSKLRSQYGLQETPC 88
Cdd:TIGR01571   2 NWSTGLFDCCEDIRLCLCGLFCPCCLFGQIAETLGTFAGECLCGGLTAIAMSALCGFCGCYTCFIRIKLREKYGIQGAPC 81

                          90       100
                  ....*....|....*....|..
gi 1002241059  89 PDCLVHLWCEPCALCQEYRELK 110
Cdd:TIGR01571  82 DDCLTHLFCCFCALCQEHRELK 103
 
Name Accession Description Interval E-value
PLAC8 pfam04749
PLAC8 family; This family includes the Placenta-specific gene 8 protein.
 10-108 5.23e-37

PLAC8 family; This family includes the Placenta-specific gene 8 protein.


Pssm-ID: 461417  Cd Length: 99  Bit Score: 122.05  E-value: 5.23e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002241059  10 WSTDLFDCFDDSSNCFMTWLCPCITFGQIAEIVDRGSSSCGTSGSLYALVFLVTGCSCIYSCIYRSKLRSQYGLQETPCP 89
Cdd:pfam04749   1 WSTGLFDCFSDCGTCLLGCCCPCVLFGRNAERLDRGNTSCLLAGFAAFCGLTGCGLGWIYSCLQRGKIREKYGIEGSPCG 80

                          90
                  ....*....|....*....
gi 1002241059  90 DCLVHLWCEPCALCQEYRE 108
Cdd:pfam04749  81 DCCVHCCCPCCALCQEYRE 99
A_thal_Cys_rich TIGR01571
uncharacterized Cys-rich domain; This model describes an uncharacterized domain of about 100 ...
 9-110 1.17e-32

uncharacterized Cys-rich domain; This model describes an uncharacterized domain of about 100 residues. It is common in plants but found also in Homo sapiens, Dictyostelium, and Leishmania; at least 12 distinct members are found in Arabidopsis. Most members of this family contain more than 10 per cent Cys, but no Cys residue is invariant across the family.


Pssm-ID: 273697  Cd Length: 104  Bit Score: 111.36  E-value: 1.17e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002241059   9 PWSTDLFDCFDDSSNCFMTWLCPCITFGQIAEIVDRGSSSCGTSGSLYALVFLVTGCSCIYSCIYRSKLRSQYGLQETPC 88
Cdd:TIGR01571   2 NWSTGLFDCCEDIRLCLCGLFCPCCLFGQIAETLGTFAGECLCGGLTAIAMSALCGFCGCYTCFIRIKLREKYGIQGAPC 81

                          90       100
                  ....*....|....*....|..
gi 1002241059  89 PDCLVHLWCEPCALCQEYRELK 110
Cdd:TIGR01571  82 DDCLTHLFCCFCALCQEHRELK 103
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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