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Conserved domains on  [gi|1002241118|ref|XP_015624853|]
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uncharacterized protein At1g08160 [Oryza sativa Japonica Group]

Protein Classification

LEA type 2 family protein( domain architecture ID 10504605)

late embryogenesis abundant (LEA) type 2 family protein plays a role in tolerance to drought and other abiotic stresses in plants

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LEA_2 pfam03168
Late embryogenesis abundant protein; Different types of LEA proteins are expressed at ...
 73-175 2.08e-06

Late embryogenesis abundant protein; Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress. The function of these proteins is unknown. This family represents a group of LEA proteins that appear to be distinct from those in pfam02987. The family DUF1511, pfam07427, has now been merged into this family.


:

Pssm-ID: 427176  Cd Length: 99  Bit Score: 44.61  E-value: 2.08e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002241118  73 TLRAYNQNKrAAVWYKSVEVGVWYGGTYLA-GAVAPGFDLPPLNVKRIDVAAPAVRAALPRgveaTVKKDRSDGKLPVDV 151
Cdd:pfam03168   1 TLRVRNPNS-FGLPYDGLDYDLSYNGQPLAsGGSPQPGTIPAGGTTTLEVPVSVSYDDLVR----LLRDLISVVGLELPY 75

                          90       100
                  ....*....|....*....|....
gi 1002241118 152 HIKGKVRFRYGLVRTRRYKLRASC 175
Cdd:pfam03168  76 TLRGRLKVGGPFFGSRTVPLSVSG 99
 
Name Accession Description Interval E-value
LEA_2 pfam03168
Late embryogenesis abundant protein; Different types of LEA proteins are expressed at ...
 73-175 2.08e-06

Late embryogenesis abundant protein; Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress. The function of these proteins is unknown. This family represents a group of LEA proteins that appear to be distinct from those in pfam02987. The family DUF1511, pfam07427, has now been merged into this family.


Pssm-ID: 427176  Cd Length: 99  Bit Score: 44.61  E-value: 2.08e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002241118  73 TLRAYNQNKrAAVWYKSVEVGVWYGGTYLA-GAVAPGFDLPPLNVKRIDVAAPAVRAALPRgveaTVKKDRSDGKLPVDV 151
Cdd:pfam03168   1 TLRVRNPNS-FGLPYDGLDYDLSYNGQPLAsGGSPQPGTIPAGGTTTLEVPVSVSYDDLVR----LLRDLISVVGLELPY 75

                          90       100
                  ....*....|....*....|....
gi 1002241118 152 HIKGKVRFRYGLVRTRRYKLRASC 175
Cdd:pfam03168  76 TLRGRLKVGGPFFGSRTVPLSVSG 99
LEA COG5608
Dessication stress tolerance protein, LEA/WHy domain [Defense mechanisms];
55-165 5.15e-03

Dessication stress tolerance protein, LEA/WHy domain [Defense mechanisms];


Pssm-ID: 444339  Cd Length: 138  Bit Score: 35.70  E-value: 5.15e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002241118  55 VTGFNFTSGGSLNGTFDITLRAYNQNKRAAVwYKSVEVGVWYGGTYLA-GAVAPGFDLPPLNVKRIDVAAPAVRAALPRG 133
Cdd:COG5608    21 LTDAEWGEVSLEEQTFALTLRVYNPNPFPLP-LKGLSYDLSLNGVKLAeGVSDEGITIPANGETTVEVPVTLDLSDLLRW 99

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1002241118 134 VEATVKKDrsdgklPVDVHIKGKVRFRYGLVR 165
Cdd:COG5608   100 LTHLLNGE------TLPYRLDGKLKVGGGTVR 125
 
Name Accession Description Interval E-value
LEA_2 pfam03168
Late embryogenesis abundant protein; Different types of LEA proteins are expressed at ...
 73-175 2.08e-06

Late embryogenesis abundant protein; Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress. The function of these proteins is unknown. This family represents a group of LEA proteins that appear to be distinct from those in pfam02987. The family DUF1511, pfam07427, has now been merged into this family.


Pssm-ID: 427176  Cd Length: 99  Bit Score: 44.61  E-value: 2.08e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002241118  73 TLRAYNQNKrAAVWYKSVEVGVWYGGTYLA-GAVAPGFDLPPLNVKRIDVAAPAVRAALPRgveaTVKKDRSDGKLPVDV 151
Cdd:pfam03168   1 TLRVRNPNS-FGLPYDGLDYDLSYNGQPLAsGGSPQPGTIPAGGTTTLEVPVSVSYDDLVR----LLRDLISVVGLELPY 75

                          90       100
                  ....*....|....*....|....
gi 1002241118 152 HIKGKVRFRYGLVRTRRYKLRASC 175
Cdd:pfam03168  76 TLRGRLKVGGPFFGSRTVPLSVSG 99
LEA COG5608
Dessication stress tolerance protein, LEA/WHy domain [Defense mechanisms];
55-165 5.15e-03

Dessication stress tolerance protein, LEA/WHy domain [Defense mechanisms];


Pssm-ID: 444339  Cd Length: 138  Bit Score: 35.70  E-value: 5.15e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002241118  55 VTGFNFTSGGSLNGTFDITLRAYNQNKRAAVwYKSVEVGVWYGGTYLA-GAVAPGFDLPPLNVKRIDVAAPAVRAALPRG 133
Cdd:COG5608    21 LTDAEWGEVSLEEQTFALTLRVYNPNPFPLP-LKGLSYDLSLNGVKLAeGVSDEGITIPANGETTVEVPVTLDLSDLLRW 99

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1002241118 134 VEATVKKDrsdgklPVDVHIKGKVRFRYGLVR 165
Cdd:COG5608   100 LTHLLNGE------TLPYRLDGKLKVGGGTVR 125
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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