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Conserved domains on  [gi|1002226081|ref|XP_015625080|]
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late embryogenesis abundant protein Lea14-A [Oryza sativa Japonica Group]

Protein Classification

LEA type 2 family protein( domain architecture ID 10504605)

late embryogenesis abundant (LEA) type 2 family protein plays a role in tolerance to drought and other abiotic stresses in plants

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LEA_2 pfam03168
Late embryogenesis abundant protein; Different types of LEA proteins are expressed at ...
 44-140 2.90e-29

Late embryogenesis abundant protein; Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress. The function of these proteins is unknown. This family represents a group of LEA proteins that appear to be distinct from those in pfam02987. The family DUF1511, pfam07427, has now been merged into this family.


:

Pssm-ID: 427176  Cd Length: 99  Bit Score: 102.78  E-value: 2.90e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002226081  44 RVDVRNPYSHSIPICEVSYSLKSAGREVASGTMPDPGSLTAGDTTRLDIPVKVPYDFLVSLARD--AGRDWDIDYEMRVG 121
Cdd:pfam03168   1 TLRVRNPNSFGLPYDGLDYDLSYNGQPLASGGSPQPGTIPAGGTTTLEVPVSVSYDDLVRLLRDliSVVGLELPYTLRGR 80

                          90
                  ....*....|....*....
gi 1002226081 122 LTVDLPILGNFTLPLTKSG 140
Cdd:pfam03168  81 LKVGGPFFGSRTVPLSVSG 99
 
Name Accession Description Interval E-value
LEA_2 pfam03168
Late embryogenesis abundant protein; Different types of LEA proteins are expressed at ...
 44-140 2.90e-29

Late embryogenesis abundant protein; Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress. The function of these proteins is unknown. This family represents a group of LEA proteins that appear to be distinct from those in pfam02987. The family DUF1511, pfam07427, has now been merged into this family.


Pssm-ID: 427176  Cd Length: 99  Bit Score: 102.78  E-value: 2.90e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002226081  44 RVDVRNPYSHSIPICEVSYSLKSAGREVASGTMPDPGSLTAGDTTRLDIPVKVPYDFLVSLARD--AGRDWDIDYEMRVG 121
Cdd:pfam03168   1 TLRVRNPNSFGLPYDGLDYDLSYNGQPLASGGSPQPGTIPAGGTTTLEVPVSVSYDDLVRLLRDliSVVGLELPYTLRGR 80

                          90
                  ....*....|....*....
gi 1002226081 122 LTVDLPILGNFTLPLTKSG 140
Cdd:pfam03168  81 LKVGGPFFGSRTVPLSVSG 99
WHy smart00769
Water Stress and Hypersensitive response;
25-124 1.79e-22

Water Stress and Hypersensitive response;


Pssm-ID: 214812  Cd Length: 100  Bit Score: 85.39  E-value: 1.79e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002226081   25 ELAELSFQSVGRGGATLAGRVDVRNPYSHSIPICEVSYSLKSAGREVASGTMPDPGSLTAGDTTRLDIPVKVPYDFLVSL 104
Cdd:smart00769   1 DVVDVEWGPVSGLEIEIVLKVKVQNPNPFPIPVNGLSYDLYLNGVELGSGEIPDSGTLPGNGRTVLDVPVTVNLFLAEAL 80

                           90       100
                   ....*....|....*....|
gi 1002226081  105 ARDAGRDWDIDYEMRVGLTV 124
Cdd:smart00769  81 IWHIANGEEIPYRLDGKLTV 100
LEA COG5608
Dessication stress tolerance protein, LEA/WHy domain [Defense mechanisms];
17-146 2.99e-21

Dessication stress tolerance protein, LEA/WHy domain [Defense mechanisms];


Pssm-ID: 444339  Cd Length: 138  Bit Score: 83.47  E-value: 2.99e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002226081  17 ARVEKPEAELAELSFQSVGRGGATLAGRVDVRNPYSHSIPICEVSYSLKSAGREVASGTMPDPGSLTAGDTTRLDIPVKV 96
Cdd:COG5608    12 PVFEKPEVSLTDAEWGEVSLEEQTFALTLRVYNPNPFPLPLKGLSYDLSLNGVKLAEGVSDEGITIPANGETTVEVPVTL 91

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1002226081  97 PYDFLVSLARDAGRDWDIDYEMRVGLTVDLPilgNFTLPLTKSGELKLPT 146
Cdd:COG5608    92 DLSDLLRWLTHLLNGETLPYRLDGKLKVGGG---TVRVPFDYEGTIELPE 138
 
Name Accession Description Interval E-value
LEA_2 pfam03168
Late embryogenesis abundant protein; Different types of LEA proteins are expressed at ...
 44-140 2.90e-29

Late embryogenesis abundant protein; Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress. The function of these proteins is unknown. This family represents a group of LEA proteins that appear to be distinct from those in pfam02987. The family DUF1511, pfam07427, has now been merged into this family.


Pssm-ID: 427176  Cd Length: 99  Bit Score: 102.78  E-value: 2.90e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002226081  44 RVDVRNPYSHSIPICEVSYSLKSAGREVASGTMPDPGSLTAGDTTRLDIPVKVPYDFLVSLARD--AGRDWDIDYEMRVG 121
Cdd:pfam03168   1 TLRVRNPNSFGLPYDGLDYDLSYNGQPLASGGSPQPGTIPAGGTTTLEVPVSVSYDDLVRLLRDliSVVGLELPYTLRGR 80

                          90
                  ....*....|....*....
gi 1002226081 122 LTVDLPILGNFTLPLTKSG 140
Cdd:pfam03168  81 LKVGGPFFGSRTVPLSVSG 99
WHy smart00769
Water Stress and Hypersensitive response;
25-124 1.79e-22

Water Stress and Hypersensitive response;


Pssm-ID: 214812  Cd Length: 100  Bit Score: 85.39  E-value: 1.79e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002226081   25 ELAELSFQSVGRGGATLAGRVDVRNPYSHSIPICEVSYSLKSAGREVASGTMPDPGSLTAGDTTRLDIPVKVPYDFLVSL 104
Cdd:smart00769   1 DVVDVEWGPVSGLEIEIVLKVKVQNPNPFPIPVNGLSYDLYLNGVELGSGEIPDSGTLPGNGRTVLDVPVTVNLFLAEAL 80

                           90       100
                   ....*....|....*....|
gi 1002226081  105 ARDAGRDWDIDYEMRVGLTV 124
Cdd:smart00769  81 IWHIANGEEIPYRLDGKLTV 100
LEA COG5608
Dessication stress tolerance protein, LEA/WHy domain [Defense mechanisms];
17-146 2.99e-21

Dessication stress tolerance protein, LEA/WHy domain [Defense mechanisms];


Pssm-ID: 444339  Cd Length: 138  Bit Score: 83.47  E-value: 2.99e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002226081  17 ARVEKPEAELAELSFQSVGRGGATLAGRVDVRNPYSHSIPICEVSYSLKSAGREVASGTMPDPGSLTAGDTTRLDIPVKV 96
Cdd:COG5608    12 PVFEKPEVSLTDAEWGEVSLEEQTFALTLRVYNPNPFPLPLKGLSYDLSLNGVKLAEGVSDEGITIPANGETTVEVPVTL 91

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1002226081  97 PYDFLVSLARDAGRDWDIDYEMRVGLTVDLPilgNFTLPLTKSGELKLPT 146
Cdd:COG5608    92 DLSDLLRWLTHLLNGETLPYRLDGKLKVGGG---TVRVPFDYEGTIELPE 138
LacZ_4 pfam16353
Beta-galactosidase, domain 4; This entry represents domain 4 found in beta-galactosidase and ...
 59-97 5.16e-03

Beta-galactosidase, domain 4; This entry represents domain 4 found in beta-galactosidase and it is organized in a jelly-roll type barrel (Rutkiewicz-Krotewicz M. et al. Crystals 2018, 8(1), 13, https://doi.org/10.3390/cryst8010013).


Pssm-ID: 465101 [Multi-domain]  Cd Length: 88  Bit Score: 34.08  E-value: 5.16e-03
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1002226081  59 EVSYSLKSAGREVASGTMPDPgSLTAGDTTRLDIPVKVP 97
Cdd:pfam16353  16 DLSWELLADGKVVASGTLELP-DVAPGESATVTLPLPLP 53
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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