|
Name |
Accession |
Description |
Interval |
E-value |
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
263-535 |
1.91e-16 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 80.16 E-value: 1.91e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 263 GKYDEAVPVLQRsleipVIEEGQEHALAKFsgcmQLGDTYGMLGQTALSLQWYaagleiqkQTLGEQDPRVGETCRYLAE 342
Cdd:COG2956 22 GQPDKAIDLLEE-----ALELDPETVEAHL----ALGNLYRRRGEYDRAIRIH--------QKLLERDPDRAEALLELAQ 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 343 AHVQALQLDEAQRLCQKALDIHRENGEPasleetadRRLMGLICDTKGDHEAALEhlvMASMAMVANGQEtevASVDCSI 422
Cdd:COG2956 85 DYLKAGLLDRAEELLEKLLELDPDDAEA--------LRLLAEIYEQEGDWEKAIE---VLERLLKLGPEN---AHAYCEL 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 423 GDIYLSLGRYDEAVFSYQKALTVFKTSkgenhatvASVFVRLADLYNKTGKLRESKSYCENALKiyQKPIPGTSLEEIAt 502
Cdd:COG2956 151 AELYLEQGDYDEAIEALEKALKLDPDC--------ARALLLLAELYLEQGDYEEAIAALERALE--QDPDYLPALPRLA- 219
|
250 260 270
....*....|....*....|....*....|...
gi 1002243095 503 gltdvsAIYETMNEHEQALKLLQKALKMYNNSA 535
Cdd:COG2956 220 ------ELYEKLGDPEEALELLRKALELDPSDD 246
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
208-673 |
2.85e-11 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 66.87 E-value: 2.85e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 208 FLLKHARDLIASDNPRRALKYALRATKSFEKCAGGKPSLNLVMSLHVvAAIYCNLGKYDEA----VPVLQRSLEIPVIEE 283
Cdd:NF040586 394 LLLDQVRYLYLRGDYESARDLAERALERWRERLGPDDRQTLRLRFHL-ANALRSLGRYEEAreldEDTLERQRRVLGLGE 472
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 284 GQEHALAKFSGcmqLGDTYGMLGQTALSLQWYAAGLEIQKQTLGEQDPRVgetcryLAEAHVQALqldeAQRL---CQKA 360
Cdd:NF040586 473 DHPHTLMTAGG---LGADLRALGRFREALELDEETLERHRRVFGEDHPRT------LRAANNLAV----SLRLlgdYREA 539
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 361 LDIHREngepasleeTADRR--LMGlicdtkGDHEAALehlvmASMAMVAngqetevasvdcsiGDIYLsLGRYDEAVFS 438
Cdd:NF040586 540 LELDRE---------VLRRRrrVLG------PDHPRTL-----LSANNLA--------------RDLRE-LGRYAEALDL 584
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 439 YQKALTVFKTS-KGENHATVASVFVRLADLYNKTGKLRESKSYCENALKIYQKPIPGTSLEEIATGLTdVSAIYETMNEH 517
Cdd:NF040586 585 LEEALERYREVlGGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDTLAAALS-LANDLRALGDA 663
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 518 EQALKLLQKALKMYNNSAGQQ--STIAGiEAQMGVLHYILGNYGEAYDSFKSAIAKLR-TCGEKKTAFFGVALNQMG-LA 593
Cdd:NF040586 664 DEARELAREVLDRYRRVLGEDhpFTLAC-RNNLAVLLRALGDPEEARELAEAALEGLReRLGPDHPYTLAAAVNLANdLA 742
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 594 CVQRYSINEAAELFEEARAVLEQEY--GPYHPDTLGVYSNLAGTYDAMGRLDEAIEILEHVVGMREEKLGTANPDVDDEK 671
Cdd:NF040586 743 ALGDLDAALGEEALERLRRLLGEDLraGPDHPDTLACAANLALDLRATGRTEEAEELRADTLARLRRVLGPDHPDTVAAR 822
|
..
gi 1002243095 672 RR 673
Cdd:NF040586 823 EG 824
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
497-653 |
7.93e-11 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 65.40 E-value: 7.93e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 497 LEEIATGLTDVSAIYETMNEHEQALKLLQKALKMYNNSAGqqstiagIEAQMGVLHYILGNYGEAYDSFKSAIAklrtcg 576
Cdd:COG3914 74 LLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAE-------ALFNLGNLLLALGRLEEALAALRRALA------ 140
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1002243095 577 eKKTAFFgVALNQMGLACVQRYSINEAAELFEEAravLEQEygpyhPDTLGVYSNLAGTYDAMGRLDEAIEILEHVV 653
Cdd:COG3914 141 -LNPDFA-EAYLNLGEALRRLGRLEEAIAALRRA---LELD-----PDNAEALNNLGNALQDLGRLEEAIAAYRRAL 207
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
586-658 |
4.01e-10 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 56.63 E-value: 4.01e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1002243095 586 ALNQMGLACVQRYSINEAAELFEEARAVLEQEYGPYHPDTLGVYSNLAGTYDAMGRLDEAIEILEHVVGMREE 658
Cdd:pfam13424 5 ALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
555-704 |
8.56e-10 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 62.24 E-value: 8.56e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 555 LGNYGEAYDSFKSAIAKLRTcGEKKTAFFGVALNQMGLACVQRYS--INEAAELFEEARAVLEQEYGPYHPDTLGVYSNL 632
Cdd:NF040586 575 LGRYAEALDLLEEALERYRE-VLGGPDHPDTLRAAKSLAVALRRAgrLEEALELAEDTYERYRRRFGPDHPDTLAAALSL 653
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1002243095 633 AGTYDAMGRLDEAIEILEHVVGMREEKLGTANPDVDDEKRRLAELLKEAGR---GRSRKAKSLENLLET----NPYTVT 704
Cdd:NF040586 654 ANDLRALGDADEARELAREVLDRYRRVLGEDHPFTLACRNNLAVLLRALGDpeeARELAEAALEGLRERlgpdHPYTLA 732
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
597-683 |
2.11e-09 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 61.09 E-value: 2.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 597 RYSinEAAELFEEARAVLEQEYGPYHPDTLGVYSNLAGTYDAMGRLDEAIEILEHVVGMREEKLGTANPDVDDEKRRLAE 676
Cdd:NF040586 493 RFR--EALELDEETLERHRRVFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLAR 570
|
....*..
gi 1002243095 677 LLKEAGR 683
Cdd:NF040586 571 DLRELGR 577
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
210-653 |
6.74e-09 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 59.33 E-value: 6.74e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 210 LKHARDLIASDNPRRA-LKYALRATKSFEKCAGGKPSLNLVMslhvvAAIYCNLGKYDEAVPVLQRSLEIpvieeGQEHA 288
Cdd:TIGR02917 430 LGRADLLLILSYLRSGqFDKALAAAKKLEKKQPDNASLHNLL-----GAIYLGKGDLAKAREAFEKALSI-----EPDFF 499
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 289 LAKFsgcmqlgdtygmlgqtalslqwyaagleiqkqtlgeqdprvgetcrYLAEAHVQALQLDEAQRLCQKALDIHRENG 368
Cdd:TIGR02917 500 PAAA----------------------------------------------NLARIDIQEGNPDDAIQRFEKVLTIDPKNL 533
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 369 EpasleetADRRLMGLIcDTKGDHEAALEHLvmaSMAMVANGQETEvasvdcsigdIYLSLGRYDEAVFSYQKALTVFKT 448
Cdd:TIGR02917 534 R-------AILALAGLY-LRTGNEEEAVAWL---EKAAELNPQEIE----------PALALAQYYLGKGQLKKALAILNE 592
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 449 SKGeNHATVASVFVRLADLYNKTGKLResksyceNALKIYQK-----PIPGTSLEEIAtgltdvsAIYETMNEHEQALKL 523
Cdd:TIGR02917 593 AAD-AAPDSPEAWLMLGRAQLAAGDLN-------KAVSSFKKllalqPDSALALLLLA-------DAYAVMKNYAKAITS 657
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 524 LQKALKMY-NNSAGQQ----------------STIAGIEAQ----------MGVLHYILGNYGEAYDSFKSAIAKLRTcg 576
Cdd:TIGR02917 658 LKRALELKpDNTEAQIglaqlllaakrtesakKIAKSLQKQhpkaalgfelEGDLYLRQKDYPAAIQAYRKALKRAPS-- 735
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1002243095 577 ekktaffgvALNQMGLACVQRYSINEAaelfeEARAVLEQeYGPYHPDTLGVYSNLAGTYDAMGRLDEAIEILEHVV 653
Cdd:TIGR02917 736 ---------SQNAIKLHRALLASGNTA-----EAVKTLEA-WLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVV 797
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
602-711 |
3.74e-08 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 56.85 E-value: 3.74e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 602 EAAELFEEARAVLEQEYGPYHPDTLGVYSNLAGTYDAMGRLDEAIEILEHVVGMREEKLGTAN-PDVDDEKRRLAELLKE 680
Cdd:NF040586 538 EALELDREVLRRRRRVLGPDHPRTLLSANNLARDLRELGRYAEALDLLEEALERYREVLGGPDhPDTLRAAKSLAVALRR 617
|
90 100 110
....*....|....*....|....*....|....*...
gi 1002243095 681 AGR---GRSRKAKSLENLL----ETNPYTVTKRGTVAA 711
Cdd:NF040586 618 AGRleeALELAEDTYERYRrrfgPDHPDTLAAALSLAN 655
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
457-531 |
5.54e-08 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 50.46 E-value: 5.54e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1002243095 457 VASVFVRLADLYNKTGKLRESKSYCENALKIYQKpIPGTSLEEIATGLTDVSAIYETMNEHEQALKLLQKALKMY 531
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALEIARR-LLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALA 75
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
208-490 |
8.22e-08 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 54.56 E-value: 8.22e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 208 FLLKHARDLIASDNPRRALKYALRATKSFEkcaggkpslNLVMSLHVVAAIYCNLGKYDEAVPVLQRSLEIpvieeGQEH 287
Cdd:cd24142 2 ELLEKAEELLDQGNFELALKFLQRALELEP---------NNVEALELLGEILLELGDVEEAREVLLRAIEL-----DPDG 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 288 ALAKFsgcMQLGDTYGmlGQTAlsLQWYAAGLEIQKQTLGEQDPRVGETCRYLAEAH---VQAL------------QLDE 352
Cdd:cd24142 68 GYEKY---LYLGQLSG--GEEA--LQYYEKGIEILEEELQALQAASAEAEEEAEELKrklSSALcalaeiymtdlcDEPD 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 353 AQRLC----QKALDIHRENGEP----ASLeetadrRLmglicdTKGDHEAALEHL--VMASMAMVANGQETEVASVDCSI 422
Cdd:cd24142 141 AEQRCeeliTKALELDPTNPEAlqtlASL------RI------SQQRPDEAKEALrrSLELWKDLKEEDEEEAEEDEAEE 208
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 423 GDIY-----LSLGRYDEAVFSYQKALTVFKTSKGENhATVASVFVRLADLYNKTGK---------LRESKSYCENALKIY 488
Cdd:cd24142 209 EDVPsyefrISLAKLLIELEMYEEALEVLEQLLDED-DEDVEVWYLLGWAYYLLGEkeqeeaaelLRDARELLEKALKLY 287
|
..
gi 1002243095 489 QK 490
Cdd:cd24142 288 EK 289
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
209-278 |
8.26e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 38.52 E-value: 8.26e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 209 LLKHARDLIASDNPRRALKYALRATKSFEKCAGGKpSLNLVMSLHVVAAIYCNLGKYDEAVPVLQRSLEI 278
Cdd:pfam13424 6 LNNLAAVLRRLGRYDEALELLEKALEIARRLLGPD-HPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
624-683 |
1.28e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 38.14 E-value: 1.28e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 624 DTLGVYSNLAGTYDAMGRLDEAIEILEHVVGMREEKLGTANPDVDDEKRRLAELLKEAGR 683
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGR 60
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
420-448 |
1.59e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 36.66 E-value: 1.59e-03
10 20
....*....|....*....|....*....
gi 1002243095 420 CSIGDIYLSLGRYDEAVFSYQKALTVFKT 448
Cdd:smart00028 5 YNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
263-535 |
1.91e-16 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 80.16 E-value: 1.91e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 263 GKYDEAVPVLQRsleipVIEEGQEHALAKFsgcmQLGDTYGMLGQTALSLQWYaagleiqkQTLGEQDPRVGETCRYLAE 342
Cdd:COG2956 22 GQPDKAIDLLEE-----ALELDPETVEAHL----ALGNLYRRRGEYDRAIRIH--------QKLLERDPDRAEALLELAQ 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 343 AHVQALQLDEAQRLCQKALDIHRENGEPasleetadRRLMGLICDTKGDHEAALEhlvMASMAMVANGQEtevASVDCSI 422
Cdd:COG2956 85 DYLKAGLLDRAEELLEKLLELDPDDAEA--------LRLLAEIYEQEGDWEKAIE---VLERLLKLGPEN---AHAYCEL 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 423 GDIYLSLGRYDEAVFSYQKALTVFKTSkgenhatvASVFVRLADLYNKTGKLRESKSYCENALKiyQKPIPGTSLEEIAt 502
Cdd:COG2956 151 AELYLEQGDYDEAIEALEKALKLDPDC--------ARALLLLAELYLEQGDYEEAIAALERALE--QDPDYLPALPRLA- 219
|
250 260 270
....*....|....*....|....*....|...
gi 1002243095 503 gltdvsAIYETMNEHEQALKLLQKALKMYNNSA 535
Cdd:COG2956 220 ------ELYEKLGDPEEALELLRKALELDPSDD 246
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
389-683 |
8.24e-16 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 78.23 E-value: 8.24e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 389 KGDHEAALEHLVmasmAMVANGQETEVASVdcSIGDIYLSLGRYDEAVFSYQKALtvfktskgENHATVASVFVRLADLY 468
Cdd:COG2956 21 NGQPDKAIDLLE----EALELDPETVEAHL--ALGNLYRRRGEYDRAIRIHQKLL--------ERDPDRAEALLELAQDY 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 469 NKTGKLRESKSYCENALKIYQKPIPgtSLEEIAtgltdvsAIYETMNEHEQALKLLQKALKMYNNSAGqqstiagIEAQM 548
Cdd:COG2956 87 LKAGLLDRAEELLEKLLELDPDDAE--ALRLLA-------EIYEQEGDWEKAIEVLERLLKLGPENAH-------AYCEL 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 549 GVLHYILGNYGEAYDSFKSAIAKLRTCGEkktaffgvALNQMGLACVQRYSINEAAELFEEAravLEQEygpyhPDTLGV 628
Cdd:COG2956 151 AELYLEQGDYDEAIEALEKALKLDPDCAR--------ALLLLAELYLEQGDYEEAIAALERA---LEQD-----PDYLPA 214
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 1002243095 629 YSNLAGTYDAMGRLDEAIEILEHVVgmreeklgTANPDvDDEKRRLAELLKEAGR 683
Cdd:COG2956 215 LPRLAELYEKLGDPEEALELLRKAL--------ELDPS-DDLLLALADLLERKEG 260
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
213-531 |
5.81e-13 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 69.76 E-value: 5.81e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 213 ARDLIASDNPRRALKYalratksFEKCAGGKPslNLVMSLHVVAAIYCNLGKYDEAVPVLQRsleipVIEEGQEHALAKF 292
Cdd:COG2956 15 GLNYLLNGQPDKAIDL-------LEEALELDP--ETVEAHLALGNLYRRRGEYDRAIRIHQK-----LLERDPDRAEALL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 293 sgcmQLGDTYGMLGQTALSLQWYAAGLEIqkqtlgeqDPRVGETCRYLAEAHVQALQLDEAQRLCQKALDIHRENGEPas 372
Cdd:COG2956 81 ----ELAQDYLKAGLLDRAEELLEKLLEL--------DPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHA-- 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 373 leetadRRLMGLICDTKGDHEAALEHLVMAsmamVANGQETEVASVdcSIGDIYLSLGRYDEAVFSYQKALtvfktskgE 452
Cdd:COG2956 147 ------YCELAELYLEQGDYDEAIEALEKA----LKLDPDCARALL--LLAELYLEQGDYEEAIAALERAL--------E 206
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1002243095 453 NHATVASVFVRLADLYNKTGKLRESKSYCENALKIYQKPIPGTSLEEiatgltdvsaIYETMNEHEQALKLLQKALKMY 531
Cdd:COG2956 207 QDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALAD----------LLERKEGLEAALALLERQLRRH 275
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
412-617 |
1.78e-12 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 67.72 E-value: 1.78e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 412 ETEVASVDCSIGDIYLSLGRYDEAVFSYQKALTVFKTSkgenhatvASVFVRLADLYNKTGKLRESKSYCENALKIyqKP 491
Cdd:COG0457 4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDD--------AEALYNLGLAYLRLGRYEEALADYEQALEL--DP 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 492 ipgtsleEIATGLTDVSAIYETMNEHEQALKLLQKALKMYNNSAGqqstiagIEAQMGVLHYILGNYGEAYDSFKSAIAK 571
Cdd:COG0457 74 -------DDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAE-------ALYNLGLALLELGRYDEAIEAYERALEL 139
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1002243095 572 LRTcgekktafFGVALNQMGLACVQRYSINEAAELFEEARAVLEQE 617
Cdd:COG0457 140 DPD--------DADALYNLGIALEKLGRYEEALELLEKLEAAALAA 177
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
328-529 |
2.03e-12 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 67.72 E-value: 2.03e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 328 EQDPRVGETCRYLAEAHVQALQLDEAQRLCQKALDIHRENGEPasleetadRRLMGLICDTKGDHEAALEHLVMAsMAMv 407
Cdd:COG0457 2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEA--------LYNLGLAYLRLGRYEEALADYEQA-LEL- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 408 angqETEVASVDCSIGDIYLSLGRYDEAVFSYQKALtvfktskgENHATVASVFVRLADLYNKTGKLRESKSYCENALKI 487
Cdd:COG0457 72 ----DPDDAEALNNLGLALQALGRYEEALEDYDKAL--------ELDPDDAEALYNLGLALLELGRYDEAIEAYERALEL 139
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1002243095 488 yqKPIPGTSLEEIAtgltdvsAIYETMNEHEQALKLLQKALK 529
Cdd:COG0457 140 --DPDDADALYNLG-------IALEKLGRYEEALELLEKLEA 172
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
247-443 |
4.03e-12 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 66.95 E-value: 4.03e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 247 NLVMSLHVVAAIYCNLGKYDEAVPVLQRSLEipvIEEGQEHALAkfsgcmQLGDTYGMLGQTALSLQWYAAGLEIqkqtl 326
Cdd:COG0457 6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALE---LDPDDAEALY------NLGLAYLRLGRYEEALADYEQALEL----- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 327 geqDPRVGETCRYLAEAHVQALQLDEAQRLCQKALDIHRENGEPasleetadRRLMGLICDTKGDHEAALEHLVMAsMAM 406
Cdd:COG0457 72 ---DPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEA--------LYNLGLALLELGRYDEAIEAYERA-LEL 139
|
170 180 190
....*....|....*....|....*....|....*..
gi 1002243095 407 vangqETEVASVDCSIGDIYLSLGRYDEAVFSYQKAL 443
Cdd:COG0457 140 -----DPDDADALYNLGIALEKLGRYEEALELLEKLE 171
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
208-673 |
2.85e-11 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 66.87 E-value: 2.85e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 208 FLLKHARDLIASDNPRRALKYALRATKSFEKCAGGKPSLNLVMSLHVvAAIYCNLGKYDEA----VPVLQRSLEIPVIEE 283
Cdd:NF040586 394 LLLDQVRYLYLRGDYESARDLAERALERWRERLGPDDRQTLRLRFHL-ANALRSLGRYEEAreldEDTLERQRRVLGLGE 472
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 284 GQEHALAKFSGcmqLGDTYGMLGQTALSLQWYAAGLEIQKQTLGEQDPRVgetcryLAEAHVQALqldeAQRL---CQKA 360
Cdd:NF040586 473 DHPHTLMTAGG---LGADLRALGRFREALELDEETLERHRRVFGEDHPRT------LRAANNLAV----SLRLlgdYREA 539
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 361 LDIHREngepasleeTADRR--LMGlicdtkGDHEAALehlvmASMAMVAngqetevasvdcsiGDIYLsLGRYDEAVFS 438
Cdd:NF040586 540 LELDRE---------VLRRRrrVLG------PDHPRTL-----LSANNLA--------------RDLRE-LGRYAEALDL 584
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 439 YQKALTVFKTS-KGENHATVASVFVRLADLYNKTGKLRESKSYCENALKIYQKPIPGTSLEEIATGLTdVSAIYETMNEH 517
Cdd:NF040586 585 LEEALERYREVlGGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDTLAAALS-LANDLRALGDA 663
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 518 EQALKLLQKALKMYNNSAGQQ--STIAGiEAQMGVLHYILGNYGEAYDSFKSAIAKLR-TCGEKKTAFFGVALNQMG-LA 593
Cdd:NF040586 664 DEARELAREVLDRYRRVLGEDhpFTLAC-RNNLAVLLRALGDPEEARELAEAALEGLReRLGPDHPYTLAAAVNLANdLA 742
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 594 CVQRYSINEAAELFEEARAVLEQEY--GPYHPDTLGVYSNLAGTYDAMGRLDEAIEILEHVVGMREEKLGTANPDVDDEK 671
Cdd:NF040586 743 ALGDLDAALGEEALERLRRLLGEDLraGPDHPDTLACAANLALDLRATGRTEEAEELRADTLARLRRVLGPDHPDTVAAR 822
|
..
gi 1002243095 672 RR 673
Cdd:NF040586 823 EG 824
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
340-490 |
6.31e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 60.59 E-value: 6.31e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 340 LAEAHVQALQLDEAQRLCQKALDIHRENGEPasleetadRRLMGLICDTKGDHEAALEHLvmaSMAMVANGQETEVAsvd 419
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKALELDPDNPEA--------FALLGEILLQLGDLDEAIVLL---HEALELDPDEPEAR--- 75
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1002243095 420 CSIGDIYLSLGRYDEAVFSYQKALtvfktSKGENHatvASVFVRLADLYNKTGKLRESKSYCENALKIYQK 490
Cdd:COG4783 76 LNLGLALLKAGDYDEALALLEKAL-----KLDPEH---PEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
497-653 |
7.93e-11 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 65.40 E-value: 7.93e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 497 LEEIATGLTDVSAIYETMNEHEQALKLLQKALKMYNNSAGqqstiagIEAQMGVLHYILGNYGEAYDSFKSAIAklrtcg 576
Cdd:COG3914 74 LLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAE-------ALFNLGNLLLALGRLEEALAALRRALA------ 140
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1002243095 577 eKKTAFFgVALNQMGLACVQRYSINEAAELFEEAravLEQEygpyhPDTLGVYSNLAGTYDAMGRLDEAIEILEHVV 653
Cdd:COG3914 141 -LNPDFA-EAYLNLGEALRRLGRLEEAIAALRRA---LELD-----PDNAEALNNLGNALQDLGRLEEAIAAYRRAL 207
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
342-570 |
2.94e-10 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 63.47 E-value: 2.94e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 342 EAHVQALQLDEAQRLCQKALDIHRENGEPASLEETADRRLMGLICDtKGDHEAALEHLVMASMAM----VANGQETEVAS 417
Cdd:COG3914 1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALL-LLAALAEAAAAALLALAAgeaaAAAAALLLLAA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 418 VDCSIGDIYLSLGRYDEAVFSYQKALtvfktskgENHATVASVFVRLADLYNKTGKLRESKSYCENALKIyqKPipgtsl 497
Cdd:COG3914 80 LLELAALLLQALGRYEEALALYRRAL--------ALNPDNAEALFNLGNLLLALGRLEEALAALRRALAL--NP------ 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1002243095 498 eEIATGLTDVSAIYETMNEHEQALKLLQKALKMYNNSAgqqstiagiEA--QMGVLHYILGNYGEAYDSFKSAIA 570
Cdd:COG3914 144 -DFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNA---------EAlnNLGNALQDLGRLEEAIAAYRRALE 208
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
586-658 |
4.01e-10 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 56.63 E-value: 4.01e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1002243095 586 ALNQMGLACVQRYSINEAAELFEEARAVLEQEYGPYHPDTLGVYSNLAGTYDAMGRLDEAIEILEHVVGMREE 658
Cdd:pfam13424 5 ALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
555-704 |
8.56e-10 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 62.24 E-value: 8.56e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 555 LGNYGEAYDSFKSAIAKLRTcGEKKTAFFGVALNQMGLACVQRYS--INEAAELFEEARAVLEQEYGPYHPDTLGVYSNL 632
Cdd:NF040586 575 LGRYAEALDLLEEALERYRE-VLGGPDHPDTLRAAKSLAVALRRAgrLEEALELAEDTYERYRRRFGPDHPDTLAAALSL 653
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1002243095 633 AGTYDAMGRLDEAIEILEHVVGMREEKLGTANPDVDDEKRRLAELLKEAGR---GRSRKAKSLENLLET----NPYTVT 704
Cdd:NF040586 654 ANDLRALGDADEARELAREVLDRYRRVLGEDHPFTLACRNNLAVLLRALGDpeeARELAEAALEGLRERlgpdHPYTLA 732
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
597-683 |
2.11e-09 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 61.09 E-value: 2.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 597 RYSinEAAELFEEARAVLEQEYGPYHPDTLGVYSNLAGTYDAMGRLDEAIEILEHVVGMREEKLGTANPDVDDEKRRLAE 676
Cdd:NF040586 493 RFR--EALELDEETLERHRRVFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLAR 570
|
....*..
gi 1002243095 677 LLKEAGR 683
Cdd:NF040586 571 DLRELGR 577
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
210-653 |
6.74e-09 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 59.33 E-value: 6.74e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 210 LKHARDLIASDNPRRA-LKYALRATKSFEKCAGGKPSLNLVMslhvvAAIYCNLGKYDEAVPVLQRSLEIpvieeGQEHA 288
Cdd:TIGR02917 430 LGRADLLLILSYLRSGqFDKALAAAKKLEKKQPDNASLHNLL-----GAIYLGKGDLAKAREAFEKALSI-----EPDFF 499
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 289 LAKFsgcmqlgdtygmlgqtalslqwyaagleiqkqtlgeqdprvgetcrYLAEAHVQALQLDEAQRLCQKALDIHRENG 368
Cdd:TIGR02917 500 PAAA----------------------------------------------NLARIDIQEGNPDDAIQRFEKVLTIDPKNL 533
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 369 EpasleetADRRLMGLIcDTKGDHEAALEHLvmaSMAMVANGQETEvasvdcsigdIYLSLGRYDEAVFSYQKALTVFKT 448
Cdd:TIGR02917 534 R-------AILALAGLY-LRTGNEEEAVAWL---EKAAELNPQEIE----------PALALAQYYLGKGQLKKALAILNE 592
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 449 SKGeNHATVASVFVRLADLYNKTGKLResksyceNALKIYQK-----PIPGTSLEEIAtgltdvsAIYETMNEHEQALKL 523
Cdd:TIGR02917 593 AAD-AAPDSPEAWLMLGRAQLAAGDLN-------KAVSSFKKllalqPDSALALLLLA-------DAYAVMKNYAKAITS 657
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 524 LQKALKMY-NNSAGQQ----------------STIAGIEAQ----------MGVLHYILGNYGEAYDSFKSAIAKLRTcg 576
Cdd:TIGR02917 658 LKRALELKpDNTEAQIglaqlllaakrtesakKIAKSLQKQhpkaalgfelEGDLYLRQKDYPAAIQAYRKALKRAPS-- 735
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1002243095 577 ekktaffgvALNQMGLACVQRYSINEAaelfeEARAVLEQeYGPYHPDTLGVYSNLAGTYDAMGRLDEAIEILEHVV 653
Cdd:TIGR02917 736 ---------SQNAIKLHRALLASGNTA-----EAVKTLEA-WLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVV 797
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
602-711 |
3.74e-08 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 56.85 E-value: 3.74e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 602 EAAELFEEARAVLEQEYGPYHPDTLGVYSNLAGTYDAMGRLDEAIEILEHVVGMREEKLGTAN-PDVDDEKRRLAELLKE 680
Cdd:NF040586 538 EALELDREVLRRRRRVLGPDHPRTLLSANNLARDLRELGRYAEALDLLEEALERYREVLGGPDhPDTLRAAKSLAVALRR 617
|
90 100 110
....*....|....*....|....*....|....*...
gi 1002243095 681 AGR---GRSRKAKSLENLL----ETNPYTVTKRGTVAA 711
Cdd:NF040586 618 AGRleeALELAEDTYERYRrrfgPDHPDTLAAALSLAN 655
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
457-531 |
5.54e-08 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 50.46 E-value: 5.54e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1002243095 457 VASVFVRLADLYNKTGKLRESKSYCENALKIYQKpIPGTSLEEIATGLTDVSAIYETMNEHEQALKLLQKALKMY 531
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALEIARR-LLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALA 75
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
414-490 |
6.80e-08 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 50.08 E-value: 6.80e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1002243095 414 EVASVDCSIGDIYLSLGRYDEAVFSYQKALTVFKTSKGENHATVASVFVRLADLYNKTGKLRESKSYCENALKIYQK 490
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
542-700 |
7.78e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 51.73 E-value: 7.78e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 542 AGIEAQMGVLHYILGNYGEAYDSFKSAIAKLRTcgekktafFGVALNQMGLACVQRYSINEAAELFEEARAVleqeygpy 621
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPD--------NPEAFALLGEILLQLGDLDEAIVLLHEALEL-------- 67
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1002243095 622 HPDTLGVYSNLAGTYDAMGRLDEAIEILEHVVgmreeklgTANPDVDDEKRRLAELLKEAGRgRSRKAKSLENLLETNP 700
Cdd:COG4783 68 DPDEPEARLNLGLALLKAGDYDEALALLEKAL--------KLDPEHPEAYLRLARAYRALGR-PDEAIAALEKALELDP 137
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
305-444 |
7.88e-08 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 55.77 E-value: 7.88e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 305 LGQTALSLQWYAAGLEIqkqtlgeqDPRVGETCRYLAEAHVQALQLDEAQRLCQKALDIHRENGEPasleetadRRLMGL 384
Cdd:COG3914 91 LGRYEEALALYRRALAL--------NPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEA--------YLNLGE 154
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 385 ICDTKGDHEAALEHLvmasmaMVANGQETEVASVDCSIGDIYLSLGRYDEAVFSYQKALT 444
Cdd:COG3914 155 ALRRLGRLEEAIAAL------RRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALE 208
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
208-490 |
8.22e-08 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 54.56 E-value: 8.22e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 208 FLLKHARDLIASDNPRRALKYALRATKSFEkcaggkpslNLVMSLHVVAAIYCNLGKYDEAVPVLQRSLEIpvieeGQEH 287
Cdd:cd24142 2 ELLEKAEELLDQGNFELALKFLQRALELEP---------NNVEALELLGEILLELGDVEEAREVLLRAIEL-----DPDG 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 288 ALAKFsgcMQLGDTYGmlGQTAlsLQWYAAGLEIQKQTLGEQDPRVGETCRYLAEAH---VQAL------------QLDE 352
Cdd:cd24142 68 GYEKY---LYLGQLSG--GEEA--LQYYEKGIEILEEELQALQAASAEAEEEAEELKrklSSALcalaeiymtdlcDEPD 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 353 AQRLC----QKALDIHRENGEP----ASLeetadrRLmglicdTKGDHEAALEHL--VMASMAMVANGQETEVASVDCSI 422
Cdd:cd24142 141 AEQRCeeliTKALELDPTNPEAlqtlASL------RI------SQQRPDEAKEALrrSLELWKDLKEEDEEEAEEDEAEE 208
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 423 GDIY-----LSLGRYDEAVFSYQKALTVFKTSKGENhATVASVFVRLADLYNKTGK---------LRESKSYCENALKIY 488
Cdd:cd24142 209 EDVPsyefrISLAKLLIELEMYEEALEVLEQLLDED-DEDVEVWYLLGWAYYLLGEkeqeeaaelLRDARELLEKALKLY 287
|
..
gi 1002243095 489 QK 490
Cdd:cd24142 288 EK 289
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
422-535 |
1.08e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 51.16 E-value: 1.08e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 422 IGDIYLSLGRYDEAVFSYQKALTVfktsKGENhatvASVFVRLADLYNKTGKLRESKSYCENALKIYqkPIPGTSLEEIA 501
Cdd:COG4235 23 LGRAYLRLGRYDEALAAYEKALRL----DPDN----ADALLDLAEALLAAGDTEEAEELLERALALD--PDNPEALYLLG 92
|
90 100 110
....*....|....*....|....*....|....
gi 1002243095 502 TgltdvsaIYETMNEHEQALKLLQKALKMYNNSA 535
Cdd:COG4235 93 L-------AAFQQGDYAEAIAAWQKLLALLPADA 119
|
|
| TPR_MalT |
pfam17874 |
MalT-like TPR region; This entry contains a series of TPR repeats. |
297-406 |
1.25e-07 |
|
MalT-like TPR region; This entry contains a series of TPR repeats.
Pssm-ID: 436107 [Multi-domain] Cd Length: 336 Bit Score: 54.24 E-value: 1.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 297 QLGDTYGMLGQTALSLQWYAAGLEIQKQTLGEQDPRVGETCRYLAEAHVQALQLDEAQRLCQKALDIHRENGEPASLEET 376
Cdd:pfam17874 85 QQGEILRAQGRLHQALETYQQALQLARDHGLQHLPLHGFLLVGLADLLYEWNDLEEAEQHAQQGIQLGRQWEPDAAVDAY 164
|
90 100 110
....*....|....*....|....*....|
gi 1002243095 377 AdrrLMGLICDTKGDHEAALEHLVMASMAM 406
Cdd:pfam17874 165 V---LLARIALAQGELEEALTLLRRAELLA 191
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
509-700 |
2.33e-07 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 54.23 E-value: 2.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 509 AIYETMNEHEQALKLLQKALKMYNNSAGQQSTIAGIEAQMGVLHYILGNYGEAYDSFKSAIAKlrtcgekkTAFFGVALN 588
Cdd:COG3914 45 LLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALAL--------NPDNAEALF 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 589 QMGLACVQRYSINEAAELFEEARAvleqeygpYHPDTLGVYSNLAGTYDAMGRLDEAIEILEHVVgmreeklgTANPDVD 668
Cdd:COG3914 117 NLGNLLLALGRLEEALAALRRALA--------LNPDFAEAYLNLGEALRRLGRLEEAIAALRRAL--------ELDPDNA 180
|
170 180 190
....*....|....*....|....*....|...
gi 1002243095 669 DEKRRLAELLKEAgrGRSRKA-KSLENLLETNP 700
Cdd:COG3914 181 EALNNLGNALQDL--GRLEEAiAAYRRALELDP 211
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
305-487 |
5.04e-07 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 53.07 E-value: 5.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 305 LGQTALSLQWYAAGLEIQKQTLGEQDPRvgetcRYLAEAHVQALQLDEAQRLCQKALDIHrengePASLEETADrrlMGL 384
Cdd:COG3914 54 AAAAALLALAAGEAAAAAAALLLLAALL-----ELAALLLQALGRYEEALALYRRALALN-----PDNAEALFN---LGN 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 385 ICDTKGDHEAALEHLvmaSMAMVANGQETEVAsvdCSIGDIYLSLGRYDEAVFSYQKALtvfktskgENHATVASVFVRL 464
Cdd:COG3914 121 LLLALGRLEEALAAL---RRALALNPDFAEAY---LNLGEALRRLGRLEEAIAALRRAL--------ELDPDNAEALNNL 186
|
170 180
....*....|....*....|...
gi 1002243095 465 ADLYNKTGKLRESKSYCENALKI 487
Cdd:COG3914 187 GNALQDLGRLEEAIAAYRRALEL 209
|
|
| TPR_MalT |
pfam17874 |
MalT-like TPR region; This entry contains a series of TPR repeats. |
334-534 |
5.62e-07 |
|
MalT-like TPR region; This entry contains a series of TPR repeats.
Pssm-ID: 436107 [Multi-domain] Cd Length: 336 Bit Score: 52.31 E-value: 5.62e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 334 GETCRYLAEAHVQALQLDEAQRLCQKALDIHRENGEPASLEETAdrrLMGLICDTKGDHEAALEHLVMASMAMVANGQET 413
Cdd:pfam17874 1 GEIAALRAQLAISKGDAERALELAEQALALLPEDDLLARGLATF---VLGEAYLCLGDLDAALQAMREAEALARRADSPH 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 414 EVASVDCSIGDIYLSLGRYDEAVFSYQKALTVFKTSKGENHATVASVFVRLADLYNKTGKLRESKSYCENALKIYQKPIP 493
Cdd:pfam17874 78 VTLWALLQQGEILRAQGRLHQALETYQQALQLARDHGLQHLPLHGFLLVGLADLLYEWNDLEEAEQHAQQGIQLGRQWEP 157
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1002243095 494 GTSLEEIATgLTDVSAiyeTMNEHEQALKLLQKALKMYNNS 534
Cdd:pfam17874 158 DAAVDAYVL-LARIAL---AQGELEEALTLLRRAELLARQS 194
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
202-443 |
5.69e-07 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 51.65 E-value: 5.69e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 202 NPDLGPFLLKHARDLIASDNPRRALKYalratksFEKCAGGKPslNLVMSLHVVAAIYCNLGKYDEAVPVLQRSLEipvI 281
Cdd:COG2956 72 DPDRAEALLELAQDYLKAGLLDRAEEL-------LEKLLELDP--DDAEALRLLAEIYEQEGDWEKAIEVLERLLK---L 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 282 EEGQEHALakfsgcMQLGDTYGMLGQTALSLQWYAAGLEIqkqtlgeqDPRVGETCRYLAEAHVQALQLDEAQRLCQKAL 361
Cdd:COG2956 140 GPENAHAY------CELAELYLEQGDYDEAIEALEKALKL--------DPDCARALLLLAELYLEQGDYEEAIAALERAL 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 362 DIHRENgepasleeTADRRLMGLICDTKGDHEAALEHLVMASmamvangQETEVASVDCSIGDIYLSLGRYDEAVFSYQK 441
Cdd:COG2956 206 EQDPDY--------LPALPRLAELYEKLGDPEEALELLRKAL-------ELDPSDDLLLALADLLERKEGLEAALALLER 270
|
..
gi 1002243095 442 AL 443
Cdd:COG2956 271 QL 272
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
625-666 |
6.12e-07 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 46.34 E-value: 6.12e-07
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1002243095 625 TLGVYSNLAGTYDAMGRLDEAIEILEHVVGMREEKLGTANPD 666
Cdd:pfam13374 1 TASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHPD 42
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
196-373 |
8.66e-07 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 52.30 E-value: 8.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 196 EDAGLNNPDLGPFLLKHARDLIASDNPRRALKYALRATKSFEKCAGgkpslnlvmSLHVVAAIYCNLGKYDEAVPVLQRS 275
Cdd:COG3914 68 AAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAE---------ALFNLGNLLLALGRLEEALAALRRA 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 276 LEIpvieeGQEHALAkfsgCMQLGDTYGMLGQTALSLQWYAAGLEIqkqtlgeqDPRVGETCRYLAEAHVQALQLDEAQR 355
Cdd:COG3914 139 LAL-----NPDFAEA----YLNLGEALRRLGRLEEAIAALRRALEL--------DPDNAEALNNLGNALQDLGRLEEAIA 201
|
170
....*....|....*...
gi 1002243095 356 LCQKALDIHRENGEPASL 373
Cdd:COG3914 202 AYRRALELDPDNADAHSN 219
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
296-399 |
1.62e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 45.00 E-value: 1.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 296 MQLGDTYGMLGQTALSLQWYAAGLEIqkqtlgeqDPRVGETCRYLAEAHVQALQLDEAQRLCQKALDIHRENGEPaslee 375
Cdd:COG4235 21 LLLGRAYLRLGRYDEALAAYEKALRL--------DPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEA----- 87
|
90 100
....*....|....*....|....
gi 1002243095 376 tadRRLMGLICDTKGDHEAALEHL 399
Cdd:COG4235 88 ---LYLLGLAAFQQGDYAEAIAAW 108
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
340-399 |
3.09e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 42.76 E-value: 3.09e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 340 LAEAHVQALQLDEAQRLCQKALDIHRENGEPASLEETADRRLMGLICDTKGDHEAALEHL 399
Cdd:pfam13424 9 LAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELL 68
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
424-535 |
3.77e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 43.44 E-value: 3.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 424 DIYLSLGRYDEAVFSYQKALTVFKtskgeNHATVASVFVRLADLYNKTGKLRESKSYCENALKIYQKPipgtslEEIATG 503
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYP-----NSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDS------PKAPDA 69
|
90 100 110
....*....|....*....|....*....|..
gi 1002243095 504 LTDVSAIYETMNEHEQALKLLQKALKMYNNSA 535
Cdd:COG1729 70 LLKLGLSYLELGDYDKARATLEELIKKYPDSE 101
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
425-530 |
3.88e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 42.85 E-value: 3.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 425 IYLSLGRYDEAVFSYQKALtvfktskgENHATVASVFVRLADLYNKTGKLRESKSYcENALKIYQkpipgtsleEIATGL 504
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKAL--------ELDPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLDP---------NNAEAL 62
|
90 100
....*....|....*....|....*.
gi 1002243095 505 TDVSAIYETMNEHEQALKLLQKALKM 530
Cdd:COG3063 63 LNLAELLLELGDYDEALAYLERALEL 88
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
413-571 |
3.98e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 44.03 E-value: 3.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 413 TEVASVDCSIGDIYLSLGRYDEAVFSYQKALtvfktskgENHATVASVFVRLADLYNKTGKLRESKSYCENALKIYQKpi 492
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKAL--------ELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPD-- 70
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1002243095 493 pgtsLEEIATGLtdvSAIYETMNEHEQALKLLQKALKMYNNSAGqqstiagIEAQMGVLHYILGNYGEAYDSFKSAIAK 571
Cdd:COG4783 71 ----EPEARLNL---GLALLKAGDYDEALALLEKALKLDPEHPE-------AYLRLARAYRALGRPDEAIAALEKALEL 135
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
297-366 |
4.95e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 41.99 E-value: 4.95e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 297 QLGDTYGMLGQTALSLQWYAAGLEIQKQTLGEQDPRVGETCRYLAEAHVQALQLDEAQRLCQKALDIHRE 366
Cdd:pfam13424 8 NLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
202-366 |
5.91e-05 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 45.38 E-value: 5.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 202 NPDLGPFLLKHARDLIASDNPRRALKYALRATKSfekcaggkpSLNLVMSLHVVAAIYCNLGKYDEAVPVLQRSLEIPvi 281
Cdd:COG0457 38 DPDDAEALYNLGLAYLRLGRYEEALADYEQALEL---------DPDDAEALNNLGLALQALGRYEEALEDYDKALELD-- 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 282 eegQEHALAKFSgcmqLGDTYGMLGQTALSLQWYAAGLEIqkqtlgeqDPRVGETCRYLAEAHVQALQLDEAQRLCQKAL 361
Cdd:COG0457 107 ---PDDAEALYN----LGLALLELGRYDEAIEAYERALEL--------DPDDADALYNLGIALEKLGRYEEALELLEKLE 171
|
....*
gi 1002243095 362 DIHRE 366
Cdd:COG0457 172 AAALA 176
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
256-375 |
1.23e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 42.30 E-value: 1.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 256 AAIYCNLGKYDEAVPVLQRSLEIpvieeGQEHALAKFsgcmQLGDTYGMLGQTALSLQWYAAGLEIqkqtlgeqDPRVGE 335
Cdd:COG4235 24 GRAYLRLGRYDEALAAYEKALRL-----DPDNADALL----DLAEALLAAGDTEEAEELLERALAL--------DPDNPE 86
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1002243095 336 TCRYLAEAHVQALQLDEAQRLCQKALDIHRENGEPASLEE 375
Cdd:COG4235 87 ALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEA 126
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
251-324 |
1.67e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 40.45 E-value: 1.67e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1002243095 251 SLHVVAAIYCNLGKYDEAVPVLQRSLEIPVIEEGQEHALAKFSgcM-QLGDTYGMLGQTALSLQWYAAGLEIQKQ 324
Cdd:pfam13424 5 ALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATT--LlNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
229-700 |
2.11e-04 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 44.69 E-value: 2.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 229 ALRATKSFEKCAGGKPSLNLVMSLhvVAAIYCNLGKYDEAVPVLQRSLEIPviEEGQEHALAkfsgcmQLGDTYGMLGQT 308
Cdd:TIGR02917 72 YAAAEKELRKALSLGYPKNQVLPL--LARAYLLQGKFQQVLDELPGKTLLD--DEGAAELLA------LRGLAYLGLGQL 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 309 ALSLQWYAAGLEIqkqtlgeqDPRVGETCRYLAEAHVQALQLDEAQRLCQKALDIHRENGEPASLEetADRRLMglicdt 388
Cdd:TIGR02917 142 ELAQKSYEQALAI--------DPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLK--GDLLLS------ 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 389 KGDHEAALEHLVMAsMAMVANGQETEVASVDcsigdIYLSLGRYDEAVfsyQKALTVFKTSKGENHATVASVFVRLadly 468
Cdd:TIGR02917 206 LGNIELALAAYRKA-IALRPNNIAVLLALAT-----ILIEAGEFEEAE---KHADALLKKAPNSPLAHYLKALVDF---- 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 469 nKTGKLRESKSYCENALKIYQKPIPGTSLeeiatgltdVSAIYETMNEHEQALKLLQKALKMYNNSAGQQSTIAGIEAQM 548
Cdd:TIGR02917 273 -QKKNYEDARETLQDALKSAPEYLPALLL---------AGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRL 342
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 549 GvlhyilgNYGEAYDSFKSAIAKlrtcGEKKTAFFGVAlnqmGLACVQRYSINEAAELFEEARAVleqeygpyHPDTLGV 628
Cdd:TIGR02917 343 G-------RVDEAIATLSPALGL----DPDDPAALSLL----GEAYLALGDFEKAAEYLAKATEL--------DPENAAA 399
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1002243095 629 YSNLAGTYDAMGRLDEAIEILEHVVGMrEEKLGTAnpdvddekrRLAELLKEAGRGRSRKA-KSLENLLETNP 700
Cdd:TIGR02917 400 RTQLGISKLSQGDPSEAIADLETAAQL-DPELGRA---------DLLLILSYLRSGQFDKAlAAAKKLEKKQP 462
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
209-367 |
3.67e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 41.33 E-value: 3.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 209 LLKHARDLIASDNPRRALKYALRATKSFEkcaggkpslNLVMSLHVVAAIYCNLGKYDEAVPVLQRSLEIpvieeGQEHA 288
Cdd:COG4783 7 LYALAQALLLAGDYDEAEALLEKALELDP---------DNPEAFALLGEILLQLGDLDEAIVLLHEALEL-----DPDEP 72
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1002243095 289 LAkfsgcmqlgdtYGMLGQTALSLQWYAAGLEIQKQTLgEQDPRVGETCRYLAEAHVQALQLDEAQRLCQKALDIHREN 367
Cdd:COG4783 73 EA-----------RLNLGLALLKAGDYDEALALLEKAL-KLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
338-487 |
4.07e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 41.48 E-value: 4.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 338 RYLAEAHVQALQLDEAQRLCQKALDIHRENGEPASLEETADRRLMGLICDTKGDHEAALEHLvmaSMAMVANGQETEVAS 417
Cdd:COG5010 16 LLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALL---EQALQLDPNNPELYY 92
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 418 vdcSIGDIYLSLGRYDEAVFSYQKALtvfktskgENHATVASVFVRLADLYNKTGKLRESKSYCENALKI 487
Cdd:COG5010 93 ---NLALLYSRSGDKDEAKEYYEKAL--------ALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
547-701 |
5.35e-04 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 42.41 E-value: 5.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 547 QMGVLHYILGNYGEAYDSFKSAIAKlrtcgEKKTAFfgvALNQMGLACVQRYSINEAAELFEEARAvleqeygpYHPDTL 626
Cdd:COG2956 13 FKGLNYLLNGQPDKAIDLLEEALEL-----DPETVE---AHLALGNLYRRRGEYDRAIRIHQKLLE--------RDPDRA 76
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1002243095 627 GVYSNLAGTYDAMGRLDEAIEILEHVVGMreeklgtaNPDVDDEKRRLAELLKEagRGRSRKA-KSLENLLETNPY 701
Cdd:COG2956 77 EALLELAQDYLKAGLLDRAEELLEKLLEL--------DPDDAEALRLLAEIYEQ--EGDWEKAiEVLERLLKLGPE 142
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
340-694 |
5.73e-04 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 43.15 E-value: 5.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 340 LAEAHVQALQLDEAQRLCQKALDIHRENGepasleeTADRRLmGLICDTKGDHEAALEHLVMAS---------------- 403
Cdd:TIGR02917 369 LGEAYLALGDFEKAAEYLAKATELDPENA-------AARTQL-GISKLSQGDPSEAIADLETAAqldpelgradlllils 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 404 ----------MAMVANGQETEV--ASVDCSIGDIYLSLGRYDEAVFSYQKALTVfktskgeNHATVASVFvRLADLYNKT 471
Cdd:TIGR02917 441 ylrsgqfdkaLAAAKKLEKKQPdnASLHNLLGAIYLGKGDLAKAREAFEKALSI-------EPDFFPAAA-NLARIDIQE 512
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 472 GKLRESKSYCENALKIYQKPIPgtsleeiatGLTDVSAIYETMNEHEQALKLLQKALKMynNSAGQQSTIAgieaqmgvl 551
Cdd:TIGR02917 513 GNPDDAIQRFEKVLTIDPKNLR---------AILALAGLYLRTGNEEEAVAWLEKAAEL--NPQEIEPALA--------- 572
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 552 hyiLGNYGEAYDSFKSAIAKLRTCgeKKTAFFGVALNQM-GLACVQRYSINEAAELFEEARAVLeqeygPYHPDTLGVys 630
Cdd:TIGR02917 573 ---LAQYYLGKGQLKKALAILNEA--ADAAPDSPEAWLMlGRAQLAAGDLNKAVSSFKKLLALQ-----PDSALALLL-- 640
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1002243095 631 nLAGTYDAMGRLDEAIEILEHVVgmreeklgTANPDVDDEKRRLAELLKEAGRGRSRK--AKSLEN 694
Cdd:TIGR02917 641 -LADAYAVMKNYAKAITSLKRAL--------ELKPDNTEAQIGLAQLLLAAKRTESAKkiAKSLQK 697
|
|
| YfgM |
COG2976 |
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal ... |
339-444 |
6.25e-04 |
|
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms];
Pssm-ID: 442215 [Multi-domain] Cd Length: 207 Bit Score: 41.76 E-value: 6.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 339 YLAEAHVQALQLDEAQRLCQKALDihreNGEPASLEETADRRLMGLICDTKgDHEAALEHLvmasMAMVANGQETEVASV 418
Cdd:COG2976 95 LLAKAAVDAGDLDKAAAQLQWVLD----NAKDPALKALARLRLARVLLAQK-KYDEALATL----DAVKPEAFAALYAEL 165
|
90 100
....*....|....*....|....*.
gi 1002243095 419 dcsIGDIYLSLGRYDEAVFSYQKALT 444
Cdd:COG2976 166 ---RGDILLAQGDKAEARAAYQKALA 188
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
422-501 |
7.10e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 39.59 E-value: 7.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 422 IGDIYLSLGRYDEAVFSYQKALTVFKtskgeNHATVASVFVRLADLYNKTGKLRESKSYCENALKIYqkpiPGTSLEEIA 501
Cdd:COG1729 36 LGEAYYALGDYDEAAEAFEKLLKRYP-----DSPKAPDALLKLGLSYLELGDYDKARATLEELIKKY----PDSEAAKEA 106
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
209-278 |
8.26e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 38.52 E-value: 8.26e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 209 LLKHARDLIASDNPRRALKYALRATKSFEKCAGGKpSLNLVMSLHVVAAIYCNLGKYDEAVPVLQRSLEI 278
Cdd:pfam13424 6 LNNLAAVLRRLGRYDEALELLEKALEIARRLLGPD-HPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
187-443 |
8.30e-04 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 41.44 E-value: 8.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 187 ASPNPHNGTEDAGLNNPDLGPFLLKHARDLIASDNPRRALKYALRATKsfeKCAGGKPSLNLVMSLHVVAA-------IY 259
Cdd:COG4785 7 ALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALA---AAALAAERIDRALALPDLAQlyyergvAY 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 260 CNLGKYDEAVPVLQRSLEipvIEEGQEHALakfsgcMQLGDTYGMLGQTALSLQWYAAGLEIqkqtlgeqDPRVGETCRY 339
Cdd:COG4785 84 DSLGDYDLAIADFDQALE---LDPDLAEAY------NNRGLAYLLLGDYDAALEDFDRALEL--------DPDYAYAYLN 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 340 LAEAHVQALQLDEAQRLCQKALDIHRENgepasleetADRRLMGLICDTKGDHEAALEHLVMAsmamvangqetevasvd 419
Cdd:COG4785 147 RGIALYYLGRYELAIADLEKALELDPND---------PERALWLYLAERKLDPEKALALLLED----------------- 200
|
250 260
....*....|....*....|....
gi 1002243095 420 csIGDIYLSLGRYDEAVFSYQKAL 443
Cdd:COG4785 201 --WATAYLLQGDTEEARELFKLAL 222
|
|
| SNAP |
cd15832 |
Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the ... |
431-615 |
1.22e-03 |
|
Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the soluble NSF attachment protein (SNAP) family are involved in intracellular membrane trafficking, including vesicular transport between the endoplasmic reticulum and Golgi apparatus. Higher eukaryotes contain three isoforms of SNAPs: alpha, beta, and gamma. Alpha-SNAP is universally present in eukaryotes and acts as an adaptor protein between SNARE (integral membrane SNAP receptor) and NSF for recruitment to the 20S complex. Beta-SNAP is brain-specific and shares high sequence identity (about 85%) with alpha-SNAP. Gamma-SNAP is weakly related (about 20-25% identity) to the two other isoforms, and is ubiquitous. It may help regulate the activity of the 20S complex. The X-ray structures of vertebrate gamma-SNAP and yeast Sec17, a SNAP family member, show similar all-helical structures consisting of an N-terminal extended twisted sheet of four Tetratricopeptide repeat (TPR)-like helical hairpins and a C-terminal helical bundle.
Pssm-ID: 276937 [Multi-domain] Cd Length: 278 Bit Score: 41.41 E-value: 1.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 431 RYDEAVFSYQKALTVFKTSKgeNHATVASVFVRLADLYNKTGKLRESKSYCENALKIYQKpipgTSLEEIATGLTDVSAI 510
Cdd:cd15832 27 KYEEAAELYEKAANAFKLAK--NWEEAGDAFLKAAECQLKLDSKHDAANAYVEAAKCYKK----VDPQEAVNCLEKAIEI 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 511 YETMNEHEQALKLLQKALKMYNNsagqqstiagieaqmgvlhyILGNYGEAYDSFKSAIAKLRTCGEKKTAffgvalNQM 590
Cdd:cd15832 101 YTEMGRFRQAAKHLKEIAELYEN--------------------ELGDLDKAIEAYEQAADYYEGEGANSLA------NKC 154
|
170 180 190
....*....|....*....|....*....|..
gi 1002243095 591 GLACVQ------RYsiNEAAELFEE-ARAVLE 615
Cdd:cd15832 155 YLKVADlaaqleDY--DKAIEIYEQvARSSLE 184
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
420-445 |
1.24e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 36.63 E-value: 1.24e-03
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
624-683 |
1.28e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 38.14 E-value: 1.28e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 624 DTLGVYSNLAGTYDAMGRLDEAIEILEHVVGMREEKLGTANPDVDDEKRRLAELLKEAGR 683
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGR 60
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
586-700 |
1.36e-03 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 41.15 E-value: 1.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 586 ALNQMGLACVQRYSINEAAELFEEARAVleqeygpyHPDTLGVYSNLAGTYDAMGRLDEAIEILEHVVgmreeklgTANP 665
Cdd:COG0457 10 AYNNLGLAYRRLGRYEEAIEDYEKALEL--------DPDDAEALYNLGLAYLRLGRYEEALADYEQAL--------ELDP 73
|
90 100 110
....*....|....*....|....*....|....*.
gi 1002243095 666 DVDDEKRRLAELLKEagRGRSRKA-KSLENLLETNP 700
Cdd:COG0457 74 DDAEALNNLGLALQA--LGRYEEAlEDYDKALELDP 107
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
305-443 |
1.38e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 39.94 E-value: 1.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 305 LGQTALSLQWYAAGLEIQKQTLGEQDPRVGETCRYLAEAHVQALQLDEAQRLCQKALDIHRENGEPasleetadRRLMGL 384
Cdd:COG5010 25 EKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPEL--------YYNLAL 96
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 1002243095 385 ICDTKGDHEAALEHLvmaSMAMVANGQETEVASvdcSIGDIYLSLGRYDEAVFSYQKAL 443
Cdd:COG5010 97 LYSRSGDKDEAKEYY---EKALALSPDNPNAYS---NLAALLLSLGQDDEAKAALQRAL 149
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
420-448 |
1.59e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 36.66 E-value: 1.59e-03
10 20
....*....|....*....|....*....
gi 1002243095 420 CSIGDIYLSLGRYDEAVFSYQKALTVFKT 448
Cdd:smart00028 5 YNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
596-700 |
1.65e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 39.56 E-value: 1.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 596 QRYSINEAAELFEEARAVLEQ--EYGPYHPDtlgVYSNLAGTYDAMGRLDEAIEILEHVVgmreeklgTANPDVDDEKRR 673
Cdd:COG5010 59 PSDNLYNKLGDFEESLALLEQalQLDPNNPE---LYYNLALLYSRSGDKDEAKEYYEKAL--------ALSPDNPNAYSN 127
|
90 100
....*....|....*....|....*..
gi 1002243095 674 LAELLKEAGRgRSRKAKSLENLLETNP 700
Cdd:COG5010 128 LAALLLSLGQ-DDEAKAALQRALGTSP 153
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
328-443 |
2.18e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 38.83 E-value: 2.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 328 EQDPRVGETCRYLAEAHVQALQLDEAQRLCQKALDIHRENgePASLEETADRRLMglicdtKGDHEAALEHLvmaSMAMV 407
Cdd:COG4235 11 AANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDN--ADALLDLAEALLA------AGDTEEAEELL---ERALA 79
|
90 100 110
....*....|....*....|....*....|....*.
gi 1002243095 408 ANGQETEVASVdcsIGDIYLSLGRYDEAVFSYQKAL 443
Cdd:COG4235 80 LDPDNPEALYL---LGLAAFQQGDYAEAIAAWQKLL 112
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
204-364 |
2.99e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 38.79 E-value: 2.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 204 DLGPFLLKHARDLIASDNPRRALKYALRATKSFEKCAGGKPSLNLVMSLHVVAAIYCNLGKYDEAVPVLQRSLEIpviee 283
Cdd:COG5010 9 RLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL----- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 284 GQEHALAKFSgcmqLGDTYGMLGQTALSLQWYAAGLEIqkqtlgeqDPRVGETCRYLAEAHVQALQLDEAQRLCQKALDI 363
Cdd:COG5010 84 DPNNPELYYN----LALLYSRSGDKDEAKEYYEKALAL--------SPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
|
.
gi 1002243095 364 H 364
Cdd:COG5010 152 S 152
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
499-570 |
3.14e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 36.98 E-value: 3.14e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1002243095 499 EIATGLTDVSAIYETMNEHEQALKLLQKALKMYNNSAGQQST-IAGIEAQMGVLHYILGNYGEAYDSFKSAIA 570
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPlTATTLLNLGRLYLELGRYEEALELLERALA 73
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
343-443 |
3.62e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 37.46 E-value: 3.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 343 AHVQALQLDEAQRLCQKALDIHRENGEPasleetadRRLMGLICDTKGDHEAALEhlvmASMAMVANGQETEVAsvdCSI 422
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADA--------LNNLGLLLLEQGRYDEAIA----LEKALKLDPNNAEAL---LNL 65
|
90 100
....*....|....*....|.
gi 1002243095 423 GDIYLSLGRYDEAVFSYQKAL 443
Cdd:COG3063 66 AELLLELGDYDEALAYLERAL 86
|
|
| TPR_8 |
pfam13181 |
Tetratricopeptide repeat; |
420-444 |
4.08e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 35.45 E-value: 4.08e-03
|
| SNAP |
cd15832 |
Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the ... |
349-490 |
4.73e-03 |
|
Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the soluble NSF attachment protein (SNAP) family are involved in intracellular membrane trafficking, including vesicular transport between the endoplasmic reticulum and Golgi apparatus. Higher eukaryotes contain three isoforms of SNAPs: alpha, beta, and gamma. Alpha-SNAP is universally present in eukaryotes and acts as an adaptor protein between SNARE (integral membrane SNAP receptor) and NSF for recruitment to the 20S complex. Beta-SNAP is brain-specific and shares high sequence identity (about 85%) with alpha-SNAP. Gamma-SNAP is weakly related (about 20-25% identity) to the two other isoforms, and is ubiquitous. It may help regulate the activity of the 20S complex. The X-ray structures of vertebrate gamma-SNAP and yeast Sec17, a SNAP family member, show similar all-helical structures consisting of an N-terminal extended twisted sheet of four Tetratricopeptide repeat (TPR)-like helical hairpins and a C-terminal helical bundle.
Pssm-ID: 276937 [Multi-domain] Cd Length: 278 Bit Score: 39.48 E-value: 4.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 349 QLDEAQRLCQKALDIHRENGEP----ASLEETADrrlmgliCDTKGDHEAALEHLVMASMAMVANGQETEVASVDCSIGD 424
Cdd:cd15832 47 NWEEAGDAFLKAAECQLKLDSKhdaaNAYVEAAK-------CYKKVDPQEAVNCLEKAIEIYTEMGRFRQAAKHLKEIAE 119
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1002243095 425 IYLS-LGRYDEAVFSYQKALTVFktsKGEN-HATVASVFVRLADLYNKTGKLREsksycenALKIYQK 490
Cdd:cd15832 120 LYENeLGDLDKAIEAYEQAADYY---EGEGaNSLANKCYLKVADLAAQLEDYDK-------AIEIYEQ 177
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
586-624 |
6.31e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 35.17 E-value: 6.31e-03
10 20 30
....*....|....*....|....*....|....*....
gi 1002243095 586 ALNQMGLACVQRYSINEAAELFEEARAVLEQEYGPYHPD 624
Cdd:pfam13374 4 SLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHPD 42
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
256-402 |
6.88e-03 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 37.48 E-value: 6.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 256 AAIYCNLGKYDEAVPVLQRSLEIpviEEGQEHALAkfsgcmQLGDTYGMLGQTALSLQWYAAGLEIqkqtlgeqDPRVGE 335
Cdd:COG4783 11 AQALLLAGDYDEAEALLEKALEL---DPDNPEAFA------LLGEILLQLGDLDEAIVLLHEALEL--------DPDEPE 73
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1002243095 336 TCRYLAEAHVQALQLDEAQRLCQKALDIHRENGEPasleetadRRLMGLICDTKGDHEAALEHLVMA 402
Cdd:COG4783 74 ARLNLGLALLKAGDYDEALALLEKALKLDPEHPEA--------YLRLARAYRALGRPDEAIAALEKA 132
|
|
| TPR_21 |
pfam09976 |
Tetratricopeptide repeat-like domain; This family resembles a single unit of a TPR repeat. |
340-467 |
7.71e-03 |
|
Tetratricopeptide repeat-like domain; This family resembles a single unit of a TPR repeat.
Pssm-ID: 430959 [Multi-domain] Cd Length: 194 Bit Score: 38.33 E-value: 7.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 340 LAEAHVQALQLDEAQRLCQKALDihreNGEPASLEETADRRLMGLICDtKGDHEAALEHLvmasMAMVANGQETEVASVD 419
Cdd:pfam09976 82 LAKAAVEAGDLAAAKAQLEWVAD----NAKDEALKALARLRLARVLLA-QGKYDEALKTL----DAVTPAAFAALYAELR 152
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1002243095 420 csiGDIYLSLGRYDEAVFSYQKALTvfktsKGENHATVASVFVRLADL 467
Cdd:pfam09976 153 ---GDILVAQGKTDEARAAYQAALD-----ALDAGAPRPLLQMKLDDL 192
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
258-366 |
8.72e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 36.30 E-value: 8.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002243095 258 IYCNLGKYDEAVPVLQRSLEI-PvieegqehalakfsgcmQLGDTYGMLGQTALSLQWYAAGLEIQKqtLGEQDPRVGET 336
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELdP-----------------DNADALNNLGLLLLEQGRYDEAIALEK--ALKLDPNNAEA 61
|
90 100 110
....*....|....*....|....*....|
gi 1002243095 337 CRYLAEAHVQALQLDEAQRLCQKALDIHRE 366
Cdd:COG3063 62 LLNLAELLLELGDYDEALAYLERALELDPS 91
|
|
| |
