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Conserved domains on  [gi|1002244938|ref|XP_015626657|]
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uncharacterized protein [Oryza sativa Japonica Group]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Smg8_Smg9 super family cl26084
Smg8_Smg9; Smg8 and Smg9 are two subunits of the Smg-1 complex. They suppress Smg-1 kinase ...
 56-1136 3.71e-41

Smg8_Smg9; Smg8 and Smg9 are two subunits of the Smg-1 complex. They suppress Smg-1 kinase activity in the isolated Smg-1 complex, and are involved in nonsense-mediated mRNA decay (NMD) in both mammals and nematodes.


The actual alignment was detected with superfamily member pfam10220:

Pssm-ID: 463005  Cd Length: 883  Bit Score: 164.43  E-value: 3.71e-41
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002244938   56 RLADRILDAHVFsPGGSARTLAGG-VRYHRDGEKRVVFLHLAP------------SPPTPLEGAGDL-----------RE 111
Cdd:pfam10220   23 DLINKLLDFNVF-PLDTDHEPEDGqIQAYYSPDTNILYLHLEGvfdvavllqaldSLSEGLEHKDFHdfwaemesqfaRM 101

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002244938  112 LLFMFSVCHVIIFLQEGFRFDTQILKKFRLLQSSKHAIAPFVKSLVAPAVPSKVARSNtptkpthrassispparrgGRh 191
Cdd:pfam10220  102 LLFLFHVCHILVLVEPTSTFDLSYVRLFRALDSLREKVLPFLPQLLRDTPVGKEWGSN-------------------GR- 161

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002244938  192 psaislmsgtgshpcmlpgLCIPVVLFVFEdditdapGAPTSPDDTNDTSsnqasntdglPKpnmtskgsssvvmlarpa 271
Cdd:pfam10220  162 -------------------LCTPRLLFLFE-------NYPPDPDKPKKRE----------PI------------------ 187

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002244938  272 irsdgtfsKKLHSSVEGQIRFLLKKCRTLvglepghivsrgvSNVSHLPLFSLDTSRVVALLDrsiSKKREPLDIIAGLF 351
Cdd:pfam10220  188 --------SKLEHALEDQIYRILRKYRIL-------------TNQSSNSLFALPANQQFVFYN---AHEDLKEDPLGELI 243

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002244938  352 EDSLTSKSSLDVSSlENNCHPATHEDVQFIKDFIFRQSDGLRGRGGHSSNTTA--------------GPVSGVGMVAaaa 417
Cdd:pfam10220  244 DILMANCEKPDVKE-NDLEILGLRPYQGFQKSFGVEPGSREAEEQQYKKDHTFwkflqqhvqlalkkGFDDSVGRNP--- 319

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002244938  418 aaaaasaasgkQMSAPDLPTFDTWLSISSSILsalfsgeDGLSSSQnmkasPTHTSSFPKNDQlpsagsnAIQTALSCLE 497
Cdd:pfam10220  320 -----------QPSHFELPNFKKWHEVAQKLH-------DLLIENK-----DEEDASYETFNE-------KYQAYLKVLE 369

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002244938  498 GNKGLNVKFSSSWCQRILPAAKEVYLKDLPAFYPTSMHEVQLQKALRSFHSMVKGPAVQVFSKKLKDECQAIWESGRQQC 577
Cdd:pfam10220  370 GSLDYDTKFSESRCEKGLPLAISAYQSNLPHHYTSTVHKNQLAQATLVFEEHARGPAFEKYLAQLQADCLKFWQNGRQQC 449

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002244938  578 DAVSLTGRPCKHQRHGKSSPSDA--ALQHSSGYVFLHACACGRSRRLRDDPFDFEAAN------MTFNCfsNC------- 642
Cdd:pfam10220  450 EELSLTGHPCVHKKHPLPKDDTNppHDKHNSGVRSVSSCNCGRKQGPREDPFTLKQANydfyqlLAEKC--NCvkleriq 527

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002244938  643 --------EDLLPTLVLPRETNAGAFPVSSWRLVRLGGARYYKPTKGLLQAGFCSKEKYLLRWTISLG-KGQGKHGTHAT 713
Cdd:pfam10220  528 fpvfqpstPDYRAAAFADEAAFPLLAAGKMNEEGLAETETDKEKPESLSTSGSQTSPTSGSDLNMSIGqSGDSLGESDDS 607

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002244938  714 NKPFSTASNADPQappivagevKSAVTQVTAEIKSMKLENSRKQPEVE----SMNNSSINFGKgLPNFTmkkPFAEVVAG 789
Cdd:pfam10220  608 SRPGSRADGTSSA---------KTENELVIQVKERPSKKSLERQPSTTeylpGMLHTESPKGL-LPQFP---SWSLVCLG 674

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002244938  790 HTARDSEFPALQQKRPLKPGN-----W----KDERQVSgadqtngrgHPALSQGPIADNESEKVSRDKSNGSaggKPFLQ 860
Cdd:pfam10220  675 PSSIYSHNTGLQEQPGFLSGSnfllpWdvvvRLEHDQK---------WPAPNNKIRGRDSSKKQGRGRKSGD---DFVVK 742

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002244938  861 IgsnivpmvvgketkevnqsiqqfmvYVGFEHECSYGHRFLLS--EKHLKEIDSsylqfersnlnneaeskhgsqklpqn 938
Cdd:pfam10220  743 I-------------------------FVGFEYECSRGHRFMMSgpDKVLKGKGS-------------------------- 771

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002244938  939 asrlaatmdvtsggklNRPMDSSGRnsqqqllkprvdaetlqpshwlsdpqnerkgelslhyvtlddggeafsLLNRNLP 1018
Cdd:pfam10220  772 ----------------GIVKESASK------------------------------------------------VLNSDMP 787

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002244938 1019 IYMHCPhCKSSDRKgnqdakvaaaVSQLQRIFIVTPDFPVLLASCPVVQFEAsclpsnasdhDQQGSFSLGCR--VVLPP 1096
Cdd:pfam10220  788 LYFPCP-CRSLKPH----------LAQLMRIHVVTPKAPVNIILDPKVQPGP----------PPCPIFTTGCQepIELSQ 846

                         1130      1140      1150      1160
                   ....*....|....*....|....*....|....*....|
gi 1002244938 1097 ESFLTMRLPFVYgvETRDGNTAPLKylEEQPELTAWLVGG 1136
Cdd:pfam10220  847 SAYWILRLPYVY--QGDSGPIAPPK--ELQPLNSGKLLAG 882
 
Name Accession Description Interval E-value
Smg8_Smg9 pfam10220
Smg8_Smg9; Smg8 and Smg9 are two subunits of the Smg-1 complex. They suppress Smg-1 kinase ...
 56-1136 3.71e-41

Smg8_Smg9; Smg8 and Smg9 are two subunits of the Smg-1 complex. They suppress Smg-1 kinase activity in the isolated Smg-1 complex, and are involved in nonsense-mediated mRNA decay (NMD) in both mammals and nematodes.


Pssm-ID: 463005  Cd Length: 883  Bit Score: 164.43  E-value: 3.71e-41
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002244938   56 RLADRILDAHVFsPGGSARTLAGG-VRYHRDGEKRVVFLHLAP------------SPPTPLEGAGDL-----------RE 111
Cdd:pfam10220   23 DLINKLLDFNVF-PLDTDHEPEDGqIQAYYSPDTNILYLHLEGvfdvavllqaldSLSEGLEHKDFHdfwaemesqfaRM 101

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002244938  112 LLFMFSVCHVIIFLQEGFRFDTQILKKFRLLQSSKHAIAPFVKSLVAPAVPSKVARSNtptkpthrassispparrgGRh 191
Cdd:pfam10220  102 LLFLFHVCHILVLVEPTSTFDLSYVRLFRALDSLREKVLPFLPQLLRDTPVGKEWGSN-------------------GR- 161

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002244938  192 psaislmsgtgshpcmlpgLCIPVVLFVFEdditdapGAPTSPDDTNDTSsnqasntdglPKpnmtskgsssvvmlarpa 271
Cdd:pfam10220  162 -------------------LCTPRLLFLFE-------NYPPDPDKPKKRE----------PI------------------ 187

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002244938  272 irsdgtfsKKLHSSVEGQIRFLLKKCRTLvglepghivsrgvSNVSHLPLFSLDTSRVVALLDrsiSKKREPLDIIAGLF 351
Cdd:pfam10220  188 --------SKLEHALEDQIYRILRKYRIL-------------TNQSSNSLFALPANQQFVFYN---AHEDLKEDPLGELI 243

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002244938  352 EDSLTSKSSLDVSSlENNCHPATHEDVQFIKDFIFRQSDGLRGRGGHSSNTTA--------------GPVSGVGMVAaaa 417
Cdd:pfam10220  244 DILMANCEKPDVKE-NDLEILGLRPYQGFQKSFGVEPGSREAEEQQYKKDHTFwkflqqhvqlalkkGFDDSVGRNP--- 319

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002244938  418 aaaaasaasgkQMSAPDLPTFDTWLSISSSILsalfsgeDGLSSSQnmkasPTHTSSFPKNDQlpsagsnAIQTALSCLE 497
Cdd:pfam10220  320 -----------QPSHFELPNFKKWHEVAQKLH-------DLLIENK-----DEEDASYETFNE-------KYQAYLKVLE 369

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002244938  498 GNKGLNVKFSSSWCQRILPAAKEVYLKDLPAFYPTSMHEVQLQKALRSFHSMVKGPAVQVFSKKLKDECQAIWESGRQQC 577
Cdd:pfam10220  370 GSLDYDTKFSESRCEKGLPLAISAYQSNLPHHYTSTVHKNQLAQATLVFEEHARGPAFEKYLAQLQADCLKFWQNGRQQC 449

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002244938  578 DAVSLTGRPCKHQRHGKSSPSDA--ALQHSSGYVFLHACACGRSRRLRDDPFDFEAAN------MTFNCfsNC------- 642
Cdd:pfam10220  450 EELSLTGHPCVHKKHPLPKDDTNppHDKHNSGVRSVSSCNCGRKQGPREDPFTLKQANydfyqlLAEKC--NCvkleriq 527

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002244938  643 --------EDLLPTLVLPRETNAGAFPVSSWRLVRLGGARYYKPTKGLLQAGFCSKEKYLLRWTISLG-KGQGKHGTHAT 713
Cdd:pfam10220  528 fpvfqpstPDYRAAAFADEAAFPLLAAGKMNEEGLAETETDKEKPESLSTSGSQTSPTSGSDLNMSIGqSGDSLGESDDS 607

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002244938  714 NKPFSTASNADPQappivagevKSAVTQVTAEIKSMKLENSRKQPEVE----SMNNSSINFGKgLPNFTmkkPFAEVVAG 789
Cdd:pfam10220  608 SRPGSRADGTSSA---------KTENELVIQVKERPSKKSLERQPSTTeylpGMLHTESPKGL-LPQFP---SWSLVCLG 674

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002244938  790 HTARDSEFPALQQKRPLKPGN-----W----KDERQVSgadqtngrgHPALSQGPIADNESEKVSRDKSNGSaggKPFLQ 860
Cdd:pfam10220  675 PSSIYSHNTGLQEQPGFLSGSnfllpWdvvvRLEHDQK---------WPAPNNKIRGRDSSKKQGRGRKSGD---DFVVK 742

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002244938  861 IgsnivpmvvgketkevnqsiqqfmvYVGFEHECSYGHRFLLS--EKHLKEIDSsylqfersnlnneaeskhgsqklpqn 938
Cdd:pfam10220  743 I-------------------------FVGFEYECSRGHRFMMSgpDKVLKGKGS-------------------------- 771

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002244938  939 asrlaatmdvtsggklNRPMDSSGRnsqqqllkprvdaetlqpshwlsdpqnerkgelslhyvtlddggeafsLLNRNLP 1018
Cdd:pfam10220  772 ----------------GIVKESASK------------------------------------------------VLNSDMP 787

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002244938 1019 IYMHCPhCKSSDRKgnqdakvaaaVSQLQRIFIVTPDFPVLLASCPVVQFEAsclpsnasdhDQQGSFSLGCR--VVLPP 1096
Cdd:pfam10220  788 LYFPCP-CRSLKPH----------LAQLMRIHVVTPKAPVNIILDPKVQPGP----------PPCPIFTTGCQepIELSQ 846

                         1130      1140      1150      1160
                   ....*....|....*....|....*....|....*....|
gi 1002244938 1097 ESFLTMRLPFVYgvETRDGNTAPLKylEEQPELTAWLVGG 1136
Cdd:pfam10220  847 SAYWILRLPYVY--QGDSGPIAPPK--ELQPLNSGKLLAG 882
 
Name Accession Description Interval E-value
Smg8_Smg9 pfam10220
Smg8_Smg9; Smg8 and Smg9 are two subunits of the Smg-1 complex. They suppress Smg-1 kinase ...
 56-1136 3.71e-41

Smg8_Smg9; Smg8 and Smg9 are two subunits of the Smg-1 complex. They suppress Smg-1 kinase activity in the isolated Smg-1 complex, and are involved in nonsense-mediated mRNA decay (NMD) in both mammals and nematodes.


Pssm-ID: 463005  Cd Length: 883  Bit Score: 164.43  E-value: 3.71e-41
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002244938   56 RLADRILDAHVFsPGGSARTLAGG-VRYHRDGEKRVVFLHLAP------------SPPTPLEGAGDL-----------RE 111
Cdd:pfam10220   23 DLINKLLDFNVF-PLDTDHEPEDGqIQAYYSPDTNILYLHLEGvfdvavllqaldSLSEGLEHKDFHdfwaemesqfaRM 101

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002244938  112 LLFMFSVCHVIIFLQEGFRFDTQILKKFRLLQSSKHAIAPFVKSLVAPAVPSKVARSNtptkpthrassispparrgGRh 191
Cdd:pfam10220  102 LLFLFHVCHILVLVEPTSTFDLSYVRLFRALDSLREKVLPFLPQLLRDTPVGKEWGSN-------------------GR- 161

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002244938  192 psaislmsgtgshpcmlpgLCIPVVLFVFEdditdapGAPTSPDDTNDTSsnqasntdglPKpnmtskgsssvvmlarpa 271
Cdd:pfam10220  162 -------------------LCTPRLLFLFE-------NYPPDPDKPKKRE----------PI------------------ 187

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002244938  272 irsdgtfsKKLHSSVEGQIRFLLKKCRTLvglepghivsrgvSNVSHLPLFSLDTSRVVALLDrsiSKKREPLDIIAGLF 351
Cdd:pfam10220  188 --------SKLEHALEDQIYRILRKYRIL-------------TNQSSNSLFALPANQQFVFYN---AHEDLKEDPLGELI 243

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002244938  352 EDSLTSKSSLDVSSlENNCHPATHEDVQFIKDFIFRQSDGLRGRGGHSSNTTA--------------GPVSGVGMVAaaa 417
Cdd:pfam10220  244 DILMANCEKPDVKE-NDLEILGLRPYQGFQKSFGVEPGSREAEEQQYKKDHTFwkflqqhvqlalkkGFDDSVGRNP--- 319

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002244938  418 aaaaasaasgkQMSAPDLPTFDTWLSISSSILsalfsgeDGLSSSQnmkasPTHTSSFPKNDQlpsagsnAIQTALSCLE 497
Cdd:pfam10220  320 -----------QPSHFELPNFKKWHEVAQKLH-------DLLIENK-----DEEDASYETFNE-------KYQAYLKVLE 369

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002244938  498 GNKGLNVKFSSSWCQRILPAAKEVYLKDLPAFYPTSMHEVQLQKALRSFHSMVKGPAVQVFSKKLKDECQAIWESGRQQC 577
Cdd:pfam10220  370 GSLDYDTKFSESRCEKGLPLAISAYQSNLPHHYTSTVHKNQLAQATLVFEEHARGPAFEKYLAQLQADCLKFWQNGRQQC 449

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002244938  578 DAVSLTGRPCKHQRHGKSSPSDA--ALQHSSGYVFLHACACGRSRRLRDDPFDFEAAN------MTFNCfsNC------- 642
Cdd:pfam10220  450 EELSLTGHPCVHKKHPLPKDDTNppHDKHNSGVRSVSSCNCGRKQGPREDPFTLKQANydfyqlLAEKC--NCvkleriq 527

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002244938  643 --------EDLLPTLVLPRETNAGAFPVSSWRLVRLGGARYYKPTKGLLQAGFCSKEKYLLRWTISLG-KGQGKHGTHAT 713
Cdd:pfam10220  528 fpvfqpstPDYRAAAFADEAAFPLLAAGKMNEEGLAETETDKEKPESLSTSGSQTSPTSGSDLNMSIGqSGDSLGESDDS 607

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002244938  714 NKPFSTASNADPQappivagevKSAVTQVTAEIKSMKLENSRKQPEVE----SMNNSSINFGKgLPNFTmkkPFAEVVAG 789
Cdd:pfam10220  608 SRPGSRADGTSSA---------KTENELVIQVKERPSKKSLERQPSTTeylpGMLHTESPKGL-LPQFP---SWSLVCLG 674

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002244938  790 HTARDSEFPALQQKRPLKPGN-----W----KDERQVSgadqtngrgHPALSQGPIADNESEKVSRDKSNGSaggKPFLQ 860
Cdd:pfam10220  675 PSSIYSHNTGLQEQPGFLSGSnfllpWdvvvRLEHDQK---------WPAPNNKIRGRDSSKKQGRGRKSGD---DFVVK 742

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002244938  861 IgsnivpmvvgketkevnqsiqqfmvYVGFEHECSYGHRFLLS--EKHLKEIDSsylqfersnlnneaeskhgsqklpqn 938
Cdd:pfam10220  743 I-------------------------FVGFEYECSRGHRFMMSgpDKVLKGKGS-------------------------- 771

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002244938  939 asrlaatmdvtsggklNRPMDSSGRnsqqqllkprvdaetlqpshwlsdpqnerkgelslhyvtlddggeafsLLNRNLP 1018
Cdd:pfam10220  772 ----------------GIVKESASK------------------------------------------------VLNSDMP 787

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002244938 1019 IYMHCPhCKSSDRKgnqdakvaaaVSQLQRIFIVTPDFPVLLASCPVVQFEAsclpsnasdhDQQGSFSLGCR--VVLPP 1096
Cdd:pfam10220  788 LYFPCP-CRSLKPH----------LAQLMRIHVVTPKAPVNIILDPKVQPGP----------PPCPIFTTGCQepIELSQ 846

                         1130      1140      1150      1160
                   ....*....|....*....|....*....|....*....|
gi 1002244938 1097 ESFLTMRLPFVYgvETRDGNTAPLKylEEQPELTAWLVGG 1136
Cdd:pfam10220  847 SAYWILRLPYVY--QGDSGPIAPPK--ELQPLNSGKLLAG 882
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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