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Conserved domains on  [gi|1002247891|ref|XP_015628114|]
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nuclear transcription factor Y subunit A-10 isoform X2 [Oryza sativa Japonica Group]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CBFB_NFYA super family cl02165
CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B;
171-232 1.48e-14

CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B;


The actual alignment was detected with superfamily member smart00521:

Pssm-ID: 445692 [Multi-domain]  Cd Length: 62  Bit Score: 67.45  E-value: 1.48e-14
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1002247891  171 PADAPIYVNAKQYEGILRRRRARAKAQRENRLVKGRKPYLHESRHRHAMRRARGSGGRFLNT 232
Cdd:smart00521   1 AEEEPVYVNAKQYHRILRRRQARAKLEAQGKLPKERKPYLHESRHLHAMRRPRGSGGRFLNT 62
 
Name Accession Description Interval E-value
CBF smart00521
CCAAT-Binding transcription Factor;
171-232 1.48e-14

CCAAT-Binding transcription Factor;


Pssm-ID: 128795 [Multi-domain]  Cd Length: 62  Bit Score: 67.45  E-value: 1.48e-14
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1002247891  171 PADAPIYVNAKQYEGILRRRRARAKAQRENRLVKGRKPYLHESRHRHAMRRARGSGGRFLNT 232
Cdd:smart00521   1 AEEEPVYVNAKQYHRILRRRQARAKLEAQGKLPKERKPYLHESRHLHAMRRPRGSGGRFLNT 62
CBFB_NFYA pfam02045
CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B;
174-229 6.45e-11

CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B;


Pssm-ID: 396572  Cd Length: 56  Bit Score: 57.20  E-value: 6.45e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1002247891 174 APIYVNAKQYEGILRRRRARAKAQRENRLVKGRKPYLHESRHRHAMRRARGSGGRF 229
Cdd:pfam02045   1 EPIYVNAKQYHRILKRRQARAKLEAEGKLPKNRKPYLHESRHKHAMRRPRGPGGRF 56
HAP2 COG5224
CCAAT-binding factor, subunit B [Transcription];
170-245 8.33e-03

CCAAT-binding factor, subunit B [Transcription];


Pssm-ID: 227549 [Multi-domain]  Cd Length: 248  Bit Score: 37.48  E-value: 8.33e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1002247891 170 APADAPIYVNAKQYEGILRRRRARAKAqrENRLVKGRKPYLHESRHRHAMRRARGSGGRFLnTKKEATAAGCGGSS 245
Cdd:COG5224   155 PGSFQPDYVNAKQGNEISKRPGLRVYL--DDSVSAGRAFYLHESRHKHAMLRVRDPTGRFL-TASEIDPLNLTGNT 227
 
Name Accession Description Interval E-value
CBF smart00521
CCAAT-Binding transcription Factor;
171-232 1.48e-14

CCAAT-Binding transcription Factor;


Pssm-ID: 128795 [Multi-domain]  Cd Length: 62  Bit Score: 67.45  E-value: 1.48e-14
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1002247891  171 PADAPIYVNAKQYEGILRRRRARAKAQRENRLVKGRKPYLHESRHRHAMRRARGSGGRFLNT 232
Cdd:smart00521   1 AEEEPVYVNAKQYHRILRRRQARAKLEAQGKLPKERKPYLHESRHLHAMRRPRGSGGRFLNT 62
CBFB_NFYA pfam02045
CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B;
174-229 6.45e-11

CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B;


Pssm-ID: 396572  Cd Length: 56  Bit Score: 57.20  E-value: 6.45e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1002247891 174 APIYVNAKQYEGILRRRRARAKAQRENRLVKGRKPYLHESRHRHAMRRARGSGGRF 229
Cdd:pfam02045   1 EPIYVNAKQYHRILKRRQARAKLEAEGKLPKNRKPYLHESRHKHAMRRPRGPGGRF 56
HAP2 COG5224
CCAAT-binding factor, subunit B [Transcription];
170-245 8.33e-03

CCAAT-binding factor, subunit B [Transcription];


Pssm-ID: 227549 [Multi-domain]  Cd Length: 248  Bit Score: 37.48  E-value: 8.33e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1002247891 170 APADAPIYVNAKQYEGILRRRRARAKAqrENRLVKGRKPYLHESRHRHAMRRARGSGGRFLnTKKEATAAGCGGSS 245
Cdd:COG5224   155 PGSFQPDYVNAKQGNEISKRPGLRVYL--DDSVSAGRAFYLHESRHKHAMLRVRDPTGRFL-TASEIDPLNLTGNT 227
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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