|
Name |
Accession |
Description |
Interval |
E-value |
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
45-835 |
0e+00 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 555.23 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002247929 45 LTSLAILPSVPGVDSFACARQLqgCIARGDARGGRAVHGHVVRRggVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPE 124
Cdd:PLN03077 74 LESMQELRVPVDEDAYVALFRL--CEWKRAVEEGSRVCSRALSS--HPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPE 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002247929 125 RNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLI 204
Cdd:PLN03077 150 RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALI 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002247929 205 DAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKG 284
Cdd:PLN03077 230 TMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGRE 309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002247929 285 IHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNE 364
Cdd:PLN03077 310 MHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE 389
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002247929 365 YSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSG 444
Cdd:PLN03077 390 ITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNN 469
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002247929 445 LGEEALSVFCEMQAAQMPcTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFq 524
Cdd:PLN03077 470 RCFEALIFFRQMLLTLKP-NSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF- 547
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002247929 525 HLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEH 604
Cdd:PLN03077 548 NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKH 627
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002247929 605 YTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLSNMYAAAGSL 684
Cdd:PLN03077 628 YACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKW 707
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002247929 685 DQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGSVDHPDMRVINAMLEWLNLKTSREGYIPDINVVLHDvDKEQKTR 764
Cdd:PLN03077 708 DEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDE-IEVSKDD 786
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1002247929 765 MLWVHSERLALAYGLVMTPPGHPIRILKNLRSCLDCHTAFTVISKIVKREIIVRDINRFHHFEDGKCSCGD 835
Cdd:PLN03077 787 IFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857
|
|
| DYW_deaminase |
pfam14432 |
DYW family of nucleic acid deaminases; This is the DYW domain found in nucleic acid deaminases ... |
745-837 |
6.64e-48 |
|
DYW family of nucleic acid deaminases; This is the DYW domain found in nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members containing this domain are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. This domain contains a characteriztic zinc-binding motif (CXXC, HXE) which has been shown to bind zinc ions. This domain is often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems.
Pssm-ID: 464172 [Multi-domain] Cd Length: 93 Bit Score: 164.52 E-value: 6.64e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002247929 745 GYIPDINVVLHDVDKEQKTRMLWVHSERLALAYGLVMTPPGHPIRILKNLRSCLDCHTAFTVISKIVKREIIVRDINRFH 824
Cdd:pfam14432 1 GYVPDLKFVLHDVDEEEKKQLLHGHSEKLALAYGLLTTPDGATIRITKNLRVCGDCHTAFKYISKIFGREIVVRDASRFH 80
|
90
....*....|...
gi 1002247929 825 HFEDGKCSCGDYW 837
Cdd:pfam14432 81 HFKNGLCSCGDFW 93
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
229-262 |
2.17e-05 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 42.06 E-value: 2.17e-05
10 20 30
....*....|....*....|....*....|....
gi 1002247929 229 VVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPN 262
Cdd:TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
506-692 |
7.92e-04 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 42.41 E-value: 7.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002247929 506 LIDTYAKCGYIRDALKVFQHLMERD---IISWNAIISGYALHGQAADALELFDRMNKSNvESNDITFVALLSVCSSTGLV 582
Cdd:COG2956 48 LGNLYRRRGEYDRAIRIHQKLLERDpdrAEALLELAQDYLKAGLLDRAEELLEKLLELD-PDDAEALRLLAEIYEQEGDW 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002247929 583 NHGLSLFDSMRidhGIKPSMEHYTC-IVRLLGRAGRLNDALQFIGD-IPSAPSAMvwRALLSSCIIHknVALGRFSA--- 657
Cdd:COG2956 127 EKAIEVLERLL---KLGPENAHAYCeLAELYLEQGDYDEAIEALEKaLKLDPDCA--RALLLLAELY--LEQGDYEEaia 199
|
170 180 190
....*....|....*....|....*....|....*...
gi 1002247929 658 --EKILEIEPQDETTYVLLSNMYAAAGSLDQ-VALLRK 692
Cdd:COG2956 200 alERALEQDPDYLPALPRLAELYEKLGDPEEaLELLRK 237
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
45-835 |
0e+00 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 555.23 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002247929 45 LTSLAILPSVPGVDSFACARQLqgCIARGDARGGRAVHGHVVRRggVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPE 124
Cdd:PLN03077 74 LESMQELRVPVDEDAYVALFRL--CEWKRAVEEGSRVCSRALSS--HPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPE 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002247929 125 RNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLI 204
Cdd:PLN03077 150 RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALI 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002247929 205 DAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKG 284
Cdd:PLN03077 230 TMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGRE 309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002247929 285 IHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNE 364
Cdd:PLN03077 310 MHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE 389
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002247929 365 YSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSG 444
Cdd:PLN03077 390 ITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNN 469
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002247929 445 LGEEALSVFCEMQAAQMPcTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFq 524
Cdd:PLN03077 470 RCFEALIFFRQMLLTLKP-NSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF- 547
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002247929 525 HLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEH 604
Cdd:PLN03077 548 NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKH 627
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002247929 605 YTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLSNMYAAAGSL 684
Cdd:PLN03077 628 YACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKW 707
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002247929 685 DQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGSVDHPDMRVINAMLEWLNLKTSREGYIPDINVVLHDvDKEQKTR 764
Cdd:PLN03077 708 DEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDE-IEVSKDD 786
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1002247929 765 MLWVHSERLALAYGLVMTPPGHPIRILKNLRSCLDCHTAFTVISKIVKREIIVRDINRFHHFEDGKCSCGD 835
Cdd:PLN03077 787 IFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857
|
|
| PLN03081 |
PLN03081 |
pentatricopeptide (PPR) repeat-containing protein; Provisional |
247-837 |
1.89e-152 |
|
pentatricopeptide (PPR) repeat-containing protein; Provisional
Pssm-ID: 215563 [Multi-domain] Cd Length: 697 Bit Score: 463.19 E-value: 1.89e-152
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002247929 247 AFRVFSKMRVSGckpnPFALTS-----VLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAF 321
Cdd:PLN03081 106 ALELFEILEAGC----PFTLPAstydaLVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLF 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002247929 322 EMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFV 401
Cdd:PLN03081 182 DEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFV 261
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002247929 402 GNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASI 481
Cdd:PLN03081 262 SCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALL 341
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002247929 482 RHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSN 561
Cdd:PLN03081 342 EHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEG 421
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002247929 562 VESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALL 641
Cdd:PLN03081 422 VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALL 501
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002247929 642 SSCIIHKNVALGRFSAEKILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGS 721
Cdd:PLN03081 502 TACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGD 581
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002247929 722 VDHPDMRVINAMLEWLNLKTSREGYIPDINVVLHDVDKEQKTRMLWVHSERLALAYGLVMTPPGHPIRILKNLRSCLDCH 801
Cdd:PLN03081 582 RLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCH 661
|
570 580 590
....*....|....*....|....*....|....*.
gi 1002247929 802 TAFTVISKIVKREIIVRDINRFHHFEDGKCSCGDYW 837
Cdd:PLN03081 662 KVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697
|
|
| DYW_deaminase |
pfam14432 |
DYW family of nucleic acid deaminases; This is the DYW domain found in nucleic acid deaminases ... |
745-837 |
6.64e-48 |
|
DYW family of nucleic acid deaminases; This is the DYW domain found in nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members containing this domain are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. This domain contains a characteriztic zinc-binding motif (CXXC, HXE) which has been shown to bind zinc ions. This domain is often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems.
Pssm-ID: 464172 [Multi-domain] Cd Length: 93 Bit Score: 164.52 E-value: 6.64e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002247929 745 GYIPDINVVLHDVDKEQKTRMLWVHSERLALAYGLVMTPPGHPIRILKNLRSCLDCHTAFTVISKIVKREIIVRDINRFH 824
Cdd:pfam14432 1 GYVPDLKFVLHDVDEEEKKQLLHGHSEKLALAYGLLTTPDGATIRITKNLRVCGDCHTAFKYISKIFGREIVVRDASRFH 80
|
90
....*....|...
gi 1002247929 825 HFEDGKCSCGDYW 837
Cdd:pfam14432 81 HFKNGLCSCGDFW 93
|
|
| E_motif |
pfam20431 |
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) ... |
647-709 |
4.51e-17 |
|
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) proteins which contain a DYW deaminase domain. The DYW domain is required for RNA editing, a process that deaminates specific cytidines to uridines. This motif, together with the E+ motif, precedes the DYW domain and, although their role is not clear, they are essential in the RNA editing reaction. The E/E+ motifs may contain two degenerate PPR motifs that could be involved in RNA or protein binding.
Pssm-ID: 466580 [Multi-domain] Cd Length: 63 Bit Score: 76.04 E-value: 4.51e-17
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1002247929 647 HKNVALGRFSAEKILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVE 709
Cdd:pfam20431 1 YSNVELAEKAANILLELEKTNDGNYTLLSNIYAYAGRWKDVERIRKLMKSSGIKKRPGCSWIE 63
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
227-611 |
2.47e-12 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 71.06 E-value: 2.47e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002247929 227 DAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPfaltsvlkaavclpsvvlgkgihgcaiktlndtepHVGGALLD 306
Cdd:PLN03218 471 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANV-----------------------------------HTFGALID 515
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002247929 307 MYAKCGDIKDARLAFEMIPYDDV----ILLSFMISRYAQSNQNEQAFELfLRLMRSS---VLPNEYSLSSVLQACTNMVQ 379
Cdd:PLN03218 516 GCARAGQVAKAFGAYGIMRSKNVkpdrVVFNALISACGQSGAVDRAFDV-LAEMKAEthpIDPDHITVGALMKACANAGQ 594
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002247929 380 LDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRD----ANEVSWNTIVVGFSQSGLGEEALSVFCE 455
Cdd:PLN03218 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKkgvkPDEVFFSALVDVAGHAGDLDKAFEILQD 674
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002247929 456 MQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIeKSTFNNDTVignsliDTYakcgyirdalkvfqhlmerdiiswN 535
Cdd:PLN03218 675 ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI-KSIKLRPTV------STM------------------------N 723
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1002247929 536 AIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDhGIKPSMEHYTCIVRL 611
Cdd:PLN03218 724 ALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGL 798
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
403-649 |
4.16e-12 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 70.29 E-value: 4.16e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002247929 403 NALMDFYAKCNDMDSSLKIFSSLRD----ANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACAST 478
Cdd:PLN03218 441 NMLMSVCASSQDIDGALRVLRLVQEaglkADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002247929 479 ASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVF------QHLMERDIISWNAIISGYALHGQAADALE 552
Cdd:PLN03218 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLaemkaeTHPIDPDHITVGALMKACANAGQVDRAKE 600
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002247929 553 LFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDhGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSA- 631
Cdd:PLN03218 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQg 679
|
250 260
....*....|....*....|
gi 1002247929 632 --PSAMVWRALLSSCIIHKN 649
Cdd:PLN03218 680 ikLGTVSYSSLMGACSNAKN 699
|
|
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
434-576 |
7.07e-11 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 66.03 E-value: 7.07e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002247929 434 NTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIrHAGQIHCSIEKSTFNNDTV-IGNSLIDTYAK 512
Cdd:PLN03077 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAV-EEGSRVCSRALSSHPSLGVrLGNAMLSMFVR 133
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1002247929 513 CGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVC 576
Cdd:PLN03077 134 FGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTC 197
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
529-576 |
4.78e-09 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 52.75 E-value: 4.78e-09
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 1002247929 529 RDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVC 576
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
356-623 |
3.74e-08 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 57.19 E-value: 3.74e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002247929 356 MRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLK--------IFSSLRD 427
Cdd:PLN03218 303 AKSSRLPNVKGLRKGVSSATNSLSLDKKNNGVKDAELPGQSSGQAASDVEEENSLAAYNGGVSGKrkspeyidAYNRLLR 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002247929 428 ANEVSWNTIVVG-FSQSGL--------------------GEEALSvFCEMqaaqMP-CTQVTYSSVLRACASTASIRHAG 485
Cdd:PLN03218 383 DGRIKDCIDLLEdMEKRGLldmdkiyhakffkackkqraVKEAFR-FAKL----IRnPTLSTFNMLMSVCASSQDIDGAL 457
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002247929 486 QIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIrDAL-KVFqHLM-----ERDIISWNAIISGYALHGQAADALELFDRMNK 559
Cdd:PLN03218 458 RVLRLVQEAGLKADCKLYTTLISTCAKSGKV-DAMfEVF-HEMvnagvEANVHTFGALIDGCARAGQVAKAFGAYGIMRS 535
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1002247929 560 SNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRID-HGIKPSMEHYTCIVRLLGRAGRLNDALQ 623
Cdd:PLN03218 536 KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAEtHPIDPDHITVGALMKACANAGQVDRAKE 600
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
429-476 |
5.32e-08 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 49.67 E-value: 5.32e-08
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 1002247929 429 NEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACA 476
Cdd:pfam13041 2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLC 49
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
226-272 |
1.29e-06 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 45.82 E-value: 1.29e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 1002247929 226 KDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKA 272
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILING 47
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
229-262 |
2.17e-05 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 42.06 E-value: 2.17e-05
10 20 30
....*....|....*....|....*....|....
gi 1002247929 229 VVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPN 262
Cdd:TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
|
| PPR_3 |
pfam13812 |
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ... |
530-576 |
2.69e-05 |
|
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.
Pssm-ID: 316342 [Multi-domain] Cd Length: 63 Bit Score: 42.73 E-value: 2.69e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 1002247929 530 DIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVC 576
Cdd:pfam13812 14 NVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVI 60
|
|
| PPR |
pfam01535 |
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ... |
532-562 |
7.24e-05 |
|
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.
Pssm-ID: 366695 [Multi-domain] Cd Length: 31 Bit Score: 40.53 E-value: 7.24e-05
10 20 30
....*....|....*....|....*....|.
gi 1002247929 532 ISWNAIISGYALHGQAADALELFDRMNKSNV 562
Cdd:pfam01535 1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
|
|
| PPR |
pfam01535 |
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ... |
229-259 |
2.15e-04 |
|
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.
Pssm-ID: 366695 [Multi-domain] Cd Length: 31 Bit Score: 38.99 E-value: 2.15e-04
10 20 30
....*....|....*....|....*....|.
gi 1002247929 229 VVWTAMVSCYSENDCPENAFRVFSKMRVSGC 259
Cdd:pfam01535 1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
|
|
| PPR |
pfam01535 |
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ... |
431-457 |
3.13e-04 |
|
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.
Pssm-ID: 366695 [Multi-domain] Cd Length: 31 Bit Score: 38.60 E-value: 3.13e-04
10 20
....*....|....*....|....*..
gi 1002247929 431 VSWNTIVVGFSQSGLGEEALSVFCEMQ 457
Cdd:pfam01535 1 VTYNSLISGYCKNGKLEEALELFKEMK 27
|
|
| PPR_1 |
pfam12854 |
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ... |
527-557 |
6.88e-04 |
|
PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.
Pssm-ID: 403914 [Multi-domain] Cd Length: 34 Bit Score: 37.71 E-value: 6.88e-04
10 20 30
....*....|....*....|....*....|.
gi 1002247929 527 MERDIISWNAIISGYALHGQAADALELFDRM 557
Cdd:pfam12854 3 LKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
506-692 |
7.92e-04 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 42.41 E-value: 7.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002247929 506 LIDTYAKCGYIRDALKVFQHLMERD---IISWNAIISGYALHGQAADALELFDRMNKSNvESNDITFVALLSVCSSTGLV 582
Cdd:COG2956 48 LGNLYRRRGEYDRAIRIHQKLLERDpdrAEALLELAQDYLKAGLLDRAEELLEKLLELD-PDDAEALRLLAEIYEQEGDW 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002247929 583 NHGLSLFDSMRidhGIKPSMEHYTC-IVRLLGRAGRLNDALQFIGD-IPSAPSAMvwRALLSSCIIHknVALGRFSA--- 657
Cdd:COG2956 127 EKAIEVLERLL---KLGPENAHAYCeLAELYLEQGDYDEAIEALEKaLKLDPDCA--RALLLLAELY--LEQGDYEEaia 199
|
170 180 190
....*....|....*....|....*....|....*...
gi 1002247929 658 --EKILEIEPQDETTYVLLSNMYAAAGSLDQ-VALLRK 692
Cdd:COG2956 200 alERALEQDPDYLPALPRLAELYEKLGDPEEaLELLRK 237
|
|
| PPR_long |
pfam17177 |
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ... |
544-712 |
9.62e-04 |
|
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.
Pssm-ID: 407303 [Multi-domain] Cd Length: 212 Bit Score: 41.61 E-value: 9.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002247929 544 HGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGL---------VNHGLSLFDSMRIDhGIKPSMEHYTCIVRLLGR 614
Cdd:pfam17177 24 HADATGALALYDAAKAEGVRLAQYHYNVLLYLCSKAADatdlkpqlaADRGFEVFEAMKAQ-GVSPNEATYTAVARLAAA 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002247929 615 AGRLNDALQFIGDIPSAPSAMVWR----ALLSSCiihknvALGRfsAEKILEIEPQ--------DETTYVLLSNMYAAAG 682
Cdd:pfam17177 103 KGDGDLAFDLVKEMEAAGVSPRLRsyspALHAYC------EAGD--ADKAYEVEEHmlahgvelEEPELAALLKVSAKAG 174
|
170 180 190
....*....|....*....|....*....|.
gi 1002247929 683 SLDQV-ALLRKSMRNigVRKVPGLSWVEIKG 712
Cdd:pfam17177 175 RADKVyAYLHRLRDA--VRQVSESTAGVLEE 203
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
499-542 |
1.19e-03 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 37.34 E-value: 1.19e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 1002247929 499 DTVIGNSLIDTYAKCGYIRDALKVFQHLMER----DIISWNAIISGYA 542
Cdd:pfam13041 2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRgvkpNVYTYTILINGLC 49
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
328-374 |
1.95e-03 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 36.96 E-value: 1.95e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 1002247929 328 DVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQAC 374
Cdd:pfam13041 2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
532-566 |
2.36e-03 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 36.28 E-value: 2.36e-03
10 20 30
....*....|....*....|....*....|....*
gi 1002247929 532 ISWNAIISGYALHGQAADALELFDRMNKSNVESND 566
Cdd:TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
|
| |
