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Conserved domains on  [gi|1002250420|ref|XP_015629418|]
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dof zinc finger protein 4-like [Oryza sativa Japonica Group]

Protein Classification

dof zinc finger protein( domain architecture ID 10496976)

dof zinc finger protein acts as a transcription factor and may play multiple roles in different biological processes including plant hormone and stress responses, flowering time, germination, and seed storage protein accumulation, among others; contains a DOF (DNA binding with one finger) domain that includes a C2C2-type zinc finger motif specifically binds to an element with the sequence 5'-AAAG-3'

Gene Ontology:  GO:0003677|GO:0046872|GO:0006355
PubMed:  12665246|11179890|17180359

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zf-Dof pfam02701
Dof domain, zinc finger; The Dof domain is a zinc finger DNA-binding domain, that shows ...
 78-132 4.33e-42

Dof domain, zinc finger; The Dof domain is a zinc finger DNA-binding domain, that shows resemblance to the Cys2 zinc finger.


:

Pssm-ID: 397014  Cd Length: 57  Bit Score: 140.86  E-value: 4.33e-42
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1002250420  78 PLRCPRCNSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKPR 132
Cdd:pfam02701   1 PLKCPRCNSTNTKFCYYNNYSLSQPRYFCKACRRYWTHGGTLRNVPVGGGCRKNK 55
 
Name Accession Description Interval E-value
zf-Dof pfam02701
Dof domain, zinc finger; The Dof domain is a zinc finger DNA-binding domain, that shows ...
 78-132 4.33e-42

Dof domain, zinc finger; The Dof domain is a zinc finger DNA-binding domain, that shows resemblance to the Cys2 zinc finger.


Pssm-ID: 397014  Cd Length: 57  Bit Score: 140.86  E-value: 4.33e-42
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1002250420  78 PLRCPRCNSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKPR 132
Cdd:pfam02701   1 PLKCPRCNSTNTKFCYYNNYSLSQPRYFCKACRRYWTHGGTLRNVPVGGGCRKNK 55
InsA COG3677
Transposase InsA [Mobilome: prophages, transposons];
81-114 8.49e-03

Transposase InsA [Mobilome: prophages, transposons];


Pssm-ID: 442893 [Multi-domain]  Cd Length: 241  Bit Score: 37.54  E-value: 8.49e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1002250420  81 CPRCNSSNTKFCYYNNYNLtqPRHFCKTCRRYWT 114
Cdd:COG3677    19 CPHCGSTRIVKNGKTRNGR--QRYRCKDCGRTFT 50
 
Name Accession Description Interval E-value
zf-Dof pfam02701
Dof domain, zinc finger; The Dof domain is a zinc finger DNA-binding domain, that shows ...
 78-132 4.33e-42

Dof domain, zinc finger; The Dof domain is a zinc finger DNA-binding domain, that shows resemblance to the Cys2 zinc finger.


Pssm-ID: 397014  Cd Length: 57  Bit Score: 140.86  E-value: 4.33e-42
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1002250420  78 PLRCPRCNSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKPR 132
Cdd:pfam02701   1 PLKCPRCNSTNTKFCYYNNYSLSQPRYFCKACRRYWTHGGTLRNVPVGGGCRKNK 55
InsA COG3677
Transposase InsA [Mobilome: prophages, transposons];
81-114 8.49e-03

Transposase InsA [Mobilome: prophages, transposons];


Pssm-ID: 442893 [Multi-domain]  Cd Length: 241  Bit Score: 37.54  E-value: 8.49e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1002250420  81 CPRCNSSNTKFCYYNNYNLtqPRHFCKTCRRYWT 114
Cdd:COG3677    19 CPHCGSTRIVKNGKTRNGR--QRYRCKDCGRTFT 50
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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