YTH domain-containing protein ECT4 isoform X2 [Oryza sativa Japonica Group]
YTH domain-containing protein( domain architecture ID 10514278)
YTH (YT521-B homology) domain-containing protein acts as a N6-methyladenosine (m6A) reader to read m6A marks and transduces their downstream regulatory effects by altering m6A-mRNA metabolism processes
List of domain hits
Name | Accession | Description | Interval | E-value | |||
YTH | pfam04146 | YT521-B-like domain; A protein of the YTH family has been shown to selectively remove ... |
464-602 | 3.88e-65 | |||
YT521-B-like domain; A protein of the YTH family has been shown to selectively remove transcripts of meiosis-specific genes expressed in mitotic cells. It has been speculated that in higher eukaryotic YTH-family members may be involved in similar mechanisms to suppress gene regulation during gametogenesis or general silencing. The rat protein YT521-B is a tyrosine-phosphorylated nuclear protein, that interacts with the nuclear transcriptosomal component scaffold attachment factor B, and the 68-kDa Src substrate associated during mitosis, Sam68. In vivo splicing assays demonstrated that YT521-B modulates alternative splice site selection in a concentration-dependent manner. The YTH domain has been identified as part of the PUA superfamily. : Pssm-ID: 461195 Cd Length: 135 Bit Score: 211.59 E-value: 3.88e-65
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PHA02732 super family | cl28620 | hypothetical protein; Provisional |
144-276 | 7.70e-03 | |||
hypothetical protein; Provisional The actual alignment was detected with superfamily member PHA02732: Pssm-ID: 165099 [Multi-domain] Cd Length: 1467 Bit Score: 39.74 E-value: 7.70e-03
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Name | Accession | Description | Interval | E-value | |||
YTH | pfam04146 | YT521-B-like domain; A protein of the YTH family has been shown to selectively remove ... |
464-602 | 3.88e-65 | |||
YT521-B-like domain; A protein of the YTH family has been shown to selectively remove transcripts of meiosis-specific genes expressed in mitotic cells. It has been speculated that in higher eukaryotic YTH-family members may be involved in similar mechanisms to suppress gene regulation during gametogenesis or general silencing. The rat protein YT521-B is a tyrosine-phosphorylated nuclear protein, that interacts with the nuclear transcriptosomal component scaffold attachment factor B, and the 68-kDa Src substrate associated during mitosis, Sam68. In vivo splicing assays demonstrated that YT521-B modulates alternative splice site selection in a concentration-dependent manner. The YTH domain has been identified as part of the PUA superfamily. Pssm-ID: 461195 Cd Length: 135 Bit Score: 211.59 E-value: 3.88e-65
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YTH | cd21134 | YTH (YT521-B homology) domains are RNA-binding domains that belong to the PUA superfamily; ... |
465-601 | 2.48e-55 | |||
YTH (YT521-B homology) domains are RNA-binding domains that belong to the PUA superfamily; Individual members of the YTH family have been shown to selectively remove transcripts of meiosis-specific genes expressed in mitotic cells. In general, eukaryotic YTH-family members may be involved in similar mechanisms to suppress gene regulation during gametogenesis or in other forms of silencing. The YTH domain is a novel RNA-binding domain that has been shown to bind to short, degenerate, single-stranded RNA motifs that loosely follow a consensus sequence. It belongs to the larger PUA superfamily. Pssm-ID: 410979 Cd Length: 133 Bit Score: 185.08 E-value: 2.48e-55
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PHA02732 | PHA02732 | hypothetical protein; Provisional |
144-276 | 7.70e-03 | |||
hypothetical protein; Provisional Pssm-ID: 165099 [Multi-domain] Cd Length: 1467 Bit Score: 39.74 E-value: 7.70e-03
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Name | Accession | Description | Interval | E-value | |||
YTH | pfam04146 | YT521-B-like domain; A protein of the YTH family has been shown to selectively remove ... |
464-602 | 3.88e-65 | |||
YT521-B-like domain; A protein of the YTH family has been shown to selectively remove transcripts of meiosis-specific genes expressed in mitotic cells. It has been speculated that in higher eukaryotic YTH-family members may be involved in similar mechanisms to suppress gene regulation during gametogenesis or general silencing. The rat protein YT521-B is a tyrosine-phosphorylated nuclear protein, that interacts with the nuclear transcriptosomal component scaffold attachment factor B, and the 68-kDa Src substrate associated during mitosis, Sam68. In vivo splicing assays demonstrated that YT521-B modulates alternative splice site selection in a concentration-dependent manner. The YTH domain has been identified as part of the PUA superfamily. Pssm-ID: 461195 Cd Length: 135 Bit Score: 211.59 E-value: 3.88e-65
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YTH | cd21134 | YTH (YT521-B homology) domains are RNA-binding domains that belong to the PUA superfamily; ... |
465-601 | 2.48e-55 | |||
YTH (YT521-B homology) domains are RNA-binding domains that belong to the PUA superfamily; Individual members of the YTH family have been shown to selectively remove transcripts of meiosis-specific genes expressed in mitotic cells. In general, eukaryotic YTH-family members may be involved in similar mechanisms to suppress gene regulation during gametogenesis or in other forms of silencing. The YTH domain is a novel RNA-binding domain that has been shown to bind to short, degenerate, single-stranded RNA motifs that loosely follow a consensus sequence. It belongs to the larger PUA superfamily. Pssm-ID: 410979 Cd Length: 133 Bit Score: 185.08 E-value: 2.48e-55
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PHA02732 | PHA02732 | hypothetical protein; Provisional |
144-276 | 7.70e-03 | |||
hypothetical protein; Provisional Pssm-ID: 165099 [Multi-domain] Cd Length: 1467 Bit Score: 39.74 E-value: 7.70e-03
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Blast search parameters | ||||
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