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Conserved domains on  [gi|1002252651|ref|XP_015630555|]
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dirigent protein 24 [Oryza sativa Japonica Group]

Protein Classification

dirigent protein( domain architecture ID 10503400)

dirigent protein may be involved in lignification in plants and imparts stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Dirigent pfam03018
Dirigent-like protein; This family contains a number of proteins which are induced during ...
 229-355 1.54e-30

Dirigent-like protein; This family contains a number of proteins which are induced during disease response in plants. Members of this family are involved in lignification.


:

Pssm-ID: 460780  Cd Length: 145  Bit Score: 113.39  E-value: 1.54e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002252651 229 PSGATLQNLLFGTTTVIDDELTEGHELGAAVVGRAQGFYVASSQDGTSKTLVLTAMFDGGgvEAHGDTLSFFGVHR-MAA 307
Cdd:pfam03018  24 PPPPGNSSTPFGTVVVFDDPLTEGPDSTSKLVGRAQGLYVSASQDELGLLMAFNFVFTDG--EYNGSTLSVLGRNPvFEE 101

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1002252651 308 PESHVAVIGGTGKYENAKGFAVIQTlHPGDEHTTDGVetlLQFSIHLI 355
Cdd:pfam03018 102 VTRELAVVGGTGDFRMARGYALLRT-HSVDSTTGDAV---VEYDVYVF 145
 
Name Accession Description Interval E-value
Dirigent pfam03018
Dirigent-like protein; This family contains a number of proteins which are induced during ...
 229-355 1.54e-30

Dirigent-like protein; This family contains a number of proteins which are induced during disease response in plants. Members of this family are involved in lignification.


Pssm-ID: 460780  Cd Length: 145  Bit Score: 113.39  E-value: 1.54e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002252651 229 PSGATLQNLLFGTTTVIDDELTEGHELGAAVVGRAQGFYVASSQDGTSKTLVLTAMFDGGgvEAHGDTLSFFGVHR-MAA 307
Cdd:pfam03018  24 PPPPGNSSTPFGTVVVFDDPLTEGPDSTSKLVGRAQGLYVSASQDELGLLMAFNFVFTDG--EYNGSTLSVLGRNPvFEE 101

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1002252651 308 PESHVAVIGGTGKYENAKGFAVIQTlHPGDEHTTDGVetlLQFSIHLI 355
Cdd:pfam03018 102 VTRELAVVGGTGDFRMARGYALLRT-HSVDSTTGDAV---VEYDVYVF 145
 
Name Accession Description Interval E-value
Dirigent pfam03018
Dirigent-like protein; This family contains a number of proteins which are induced during ...
 229-355 1.54e-30

Dirigent-like protein; This family contains a number of proteins which are induced during disease response in plants. Members of this family are involved in lignification.


Pssm-ID: 460780  Cd Length: 145  Bit Score: 113.39  E-value: 1.54e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002252651 229 PSGATLQNLLFGTTTVIDDELTEGHELGAAVVGRAQGFYVASSQDGTSKTLVLTAMFDGGgvEAHGDTLSFFGVHR-MAA 307
Cdd:pfam03018  24 PPPPGNSSTPFGTVVVFDDPLTEGPDSTSKLVGRAQGLYVSASQDELGLLMAFNFVFTDG--EYNGSTLSVLGRNPvFEE 101

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1002252651 308 PESHVAVIGGTGKYENAKGFAVIQTlHPGDEHTTDGVetlLQFSIHLI 355
Cdd:pfam03018 102 VTRELAVVGGTGDFRMARGYALLRT-HSVDSTTGDAV---VEYDVYVF 145
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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