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Conserved domains on  [gi|1002252845|ref|XP_015630652|]
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uncharacterized protein [Oryza sativa Japonica Group]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3615 super family cl13680
Protein of unknown function (DUF3615); This domain family is found in bacteria and eukaryotes, ...
 122-232 1.40e-08

Protein of unknown function (DUF3615); This domain family is found in bacteria and eukaryotes, and is typically between 86 and 97 amino acids in length. There is a conserved FAE sequence motif. There is a single completely conserved residue F that may be functionally important.


The actual alignment was detected with superfamily member pfam12274:

Pssm-ID: 463515  Cd Length: 94  Bit Score: 51.21  E-value: 1.40e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002252845 122 YNENNPEDC-YEFTSVLLHdVCNFCDGGVCHVHINF----KARNVTTNSEELFFAELaliNNVFDQYSgYTTTACCIIDG 196
Cdd:pfam12274   1 YNEDHNLLGaYELVEVLHS-NFIFEGYGRWYYHFNFtaktKGADSLDGTPKLFFAEV---KHICGEEE-LVVTCCCPLEP 75

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1002252845 197 NclgglrnvllngcflreeryDEKNCYACDE---KIKHP 232
Cdd:pfam12274  76 D--------------------DNGHCYGCKNqgvDIKHP 94
 
Name Accession Description Interval E-value
DUF3615 pfam12274
Protein of unknown function (DUF3615); This domain family is found in bacteria and eukaryotes, ...
 122-232 1.40e-08

Protein of unknown function (DUF3615); This domain family is found in bacteria and eukaryotes, and is typically between 86 and 97 amino acids in length. There is a conserved FAE sequence motif. There is a single completely conserved residue F that may be functionally important.


Pssm-ID: 463515  Cd Length: 94  Bit Score: 51.21  E-value: 1.40e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002252845 122 YNENNPEDC-YEFTSVLLHdVCNFCDGGVCHVHINF----KARNVTTNSEELFFAELaliNNVFDQYSgYTTTACCIIDG 196
Cdd:pfam12274   1 YNEDHNLLGaYELVEVLHS-NFIFEGYGRWYYHFNFtaktKGADSLDGTPKLFFAEV---KHICGEEE-LVVTCCCPLEP 75

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1002252845 197 NclgglrnvllngcflreeryDEKNCYACDE---KIKHP 232
Cdd:pfam12274  76 D--------------------DNGHCYGCKNqgvDIKHP 94
 
Name Accession Description Interval E-value
DUF3615 pfam12274
Protein of unknown function (DUF3615); This domain family is found in bacteria and eukaryotes, ...
 122-232 1.40e-08

Protein of unknown function (DUF3615); This domain family is found in bacteria and eukaryotes, and is typically between 86 and 97 amino acids in length. There is a conserved FAE sequence motif. There is a single completely conserved residue F that may be functionally important.


Pssm-ID: 463515  Cd Length: 94  Bit Score: 51.21  E-value: 1.40e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002252845 122 YNENNPEDC-YEFTSVLLHdVCNFCDGGVCHVHINF----KARNVTTNSEELFFAELaliNNVFDQYSgYTTTACCIIDG 196
Cdd:pfam12274   1 YNEDHNLLGaYELVEVLHS-NFIFEGYGRWYYHFNFtaktKGADSLDGTPKLFFAEV---KHICGEEE-LVVTCCCPLEP 75

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1002252845 197 NclgglrnvllngcflreeryDEKNCYACDE---KIKHP 232
Cdd:pfam12274  76 D--------------------DNGHCYGCKNqgvDIKHP 94
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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