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Conserved domains on  [gi|1002224252|ref|XP_015631191|]
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receptor-like protein EIX1 [Oryza sativa Japonica Group]

Protein Classification

leucine-rich repeat domain-containing protein( domain architecture ID 1000136)

leucine-rich repeat (LRR) domain-containing protein may participate in protein-protein interactions

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
PLN00113 super family cl33413
leucine-rich repeat receptor-like protein kinase; Provisional
 50-683 2.11e-53

leucine-rich repeat receptor-like protein kinase; Provisional


The actual alignment was detected with superfamily member PLN00113:

Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 198.92  E-value: 2.11e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252  50 AAERDALLSFKAGItRDPKKRLSSWLGEN-CCQWSGVRCSNrTGHVIILNLSNTylyyddphyykcahvdfPLYGYISSS 128
Cdd:PLN00113   28 AEELELLLSFKSSI-NDPLKYLSNWNSSAdVCLWQGITCNN-SSRVVSIDLSGK-----------------NISGKISSA 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 129 LVSLRQLKRLDLSGNVLGESMPE-FLGSFQSLTHLNLARMGFYGRVPHqlGNLSNLQFLDITSEiydhppMHTADIswla 207
Cdd:PLN00113   89 IFRLPYIQTINLSNNQLSGPIPDdIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNN------MLSGEI---- 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 208 rlpslkYLDMSyvnlssvvdwvrpvnMLSRLEVLRLTGCWIMSSSSTGLTNLTSLETLDLSENTLFGTvIPNWVWSMKTV 287
Cdd:PLN00113  157 ------PNDIG---------------SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQ-IPRELGQMKSL 214

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 288 KMLNLASCQLSGSFPDGLGNLTLLEGLNLggdSYhgsNSFEGTLPSTLNNTCNLRVLYLNENligveikDLMDKLPSCTW 367
Cdd:PLN00113  215 KWIYLGYNNLSGEIPYEIGGLTSLNHLDL---VY---NNLTGPIPSSLGNLKNLQYLFLYQN-------KLSGPIPPSIF 281

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 368 N--KLEELDLSYNDITGNLDWLGSQ-TSLTSLYLSWNKFSGHLPLLIREMANLTTLILHNNNISGVISnQHLSGLESLER 444
Cdd:PLN00113  282 SlqKLISLDLSDNSLSGEIPELVIQlQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP-KNLGKHNNLTV 360

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 445 IIMSYNPLKVVLDESWSPPFGLFDVYFASCQLGPEFPvwiKSLNNCYS---IDVSSSGIKDELPNWFWNLvSDVANVNIS 521
Cdd:PLN00113  361 LDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIP---KSLGACRSlrrVRLQDNSFSGELPSEFTKL-PLVYFLDIS 436

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 522 HNQIRGKLPDSFQGM-STEKLILASNQLTGRLPSL--QENLYYLDISRNLLSGPLPFHFGG-ANLGKLILFSNHINGSIP 597
Cdd:PLN00113  437 NNNLQGRINSRKWDMpSLQMLSLARNKFFGGLPDSfgSKRLENLDLSRNQFSGAVPRKLGSlSELMQLKLSENKLSGEIP 516

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 598 QSLCKMHNLGALDLADNFLVGELPhclptelkpstgGSFIHSTSLNIhiLLLSKNQLSGEFPMLLQSCQSITILDLAWNK 677
Cdd:PLN00113  517 DELSSCKKLVSLDLSHNQLSGQIP------------ASFSEMPVLSQ--LDLSQNQLSGEIPKNLGNVESLVQVNISHNH 582


                  ....*.
gi 1002224252 678 YSGKLP 683
Cdd:PLN00113  583 LHGSLP 588
 
Name Accession Description Interval E-value
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 50-683 2.11e-53

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 198.92  E-value: 2.11e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252  50 AAERDALLSFKAGItRDPKKRLSSWLGEN-CCQWSGVRCSNrTGHVIILNLSNTylyyddphyykcahvdfPLYGYISSS 128
Cdd:PLN00113   28 AEELELLLSFKSSI-NDPLKYLSNWNSSAdVCLWQGITCNN-SSRVVSIDLSGK-----------------NISGKISSA 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 129 LVSLRQLKRLDLSGNVLGESMPE-FLGSFQSLTHLNLARMGFYGRVPHqlGNLSNLQFLDITSEiydhppMHTADIswla 207
Cdd:PLN00113   89 IFRLPYIQTINLSNNQLSGPIPDdIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNN------MLSGEI---- 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 208 rlpslkYLDMSyvnlssvvdwvrpvnMLSRLEVLRLTGCWIMSSSSTGLTNLTSLETLDLSENTLFGTvIPNWVWSMKTV 287
Cdd:PLN00113  157 ------PNDIG---------------SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQ-IPRELGQMKSL 214

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 288 KMLNLASCQLSGSFPDGLGNLTLLEGLNLggdSYhgsNSFEGTLPSTLNNTCNLRVLYLNENligveikDLMDKLPSCTW 367
Cdd:PLN00113  215 KWIYLGYNNLSGEIPYEIGGLTSLNHLDL---VY---NNLTGPIPSSLGNLKNLQYLFLYQN-------KLSGPIPPSIF 281

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 368 N--KLEELDLSYNDITGNLDWLGSQ-TSLTSLYLSWNKFSGHLPLLIREMANLTTLILHNNNISGVISnQHLSGLESLER 444
Cdd:PLN00113  282 SlqKLISLDLSDNSLSGEIPELVIQlQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP-KNLGKHNNLTV 360

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 445 IIMSYNPLKVVLDESWSPPFGLFDVYFASCQLGPEFPvwiKSLNNCYS---IDVSSSGIKDELPNWFWNLvSDVANVNIS 521
Cdd:PLN00113  361 LDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIP---KSLGACRSlrrVRLQDNSFSGELPSEFTKL-PLVYFLDIS 436

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 522 HNQIRGKLPDSFQGM-STEKLILASNQLTGRLPSL--QENLYYLDISRNLLSGPLPFHFGG-ANLGKLILFSNHINGSIP 597
Cdd:PLN00113  437 NNNLQGRINSRKWDMpSLQMLSLARNKFFGGLPDSfgSKRLENLDLSRNQFSGAVPRKLGSlSELMQLKLSENKLSGEIP 516

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 598 QSLCKMHNLGALDLADNFLVGELPhclptelkpstgGSFIHSTSLNIhiLLLSKNQLSGEFPMLLQSCQSITILDLAWNK 677
Cdd:PLN00113  517 DELSSCKKLVSLDLSHNQLSGQIP------------ASFSEMPVLSQ--LDLSQNQLSGEIPKNLGNVESLVQVNISHNH 582


                  ....*.
gi 1002224252 678 YSGKLP 683
Cdd:PLN00113  583 LHGSLP 588
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
200-569 6.49e-18

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 86.91  E-value: 6.49e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 200 TADISWLARLPSLKYLDMSYVNLSSVVDWVRPVNMLSRLEVLRLTGCWIMSSSSTGLTNLTSLETLDLSENTLFG----- 274
Cdd:COG4886    36 ALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGNEELSnltnl 115

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 275 ----------TVIPNWVWSMKTVKMLNLASCQLSgSFPDGLGNLTLLEGLNLGGdsyhgsNSFEgTLPSTLNNTCNLRVL 344
Cdd:COG4886   116 esldlsgnqlTDLPEELANLTNLKELDLSNNQLT-DLPEPLGNLTNLKSLDLSN------NQLT-DLPEELGNLTNLKEL 187

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 345 YLNENligvEIKDLMDKLPSCTwnKLEELDLSYNDITGNLDWLGSQTSLTSLYLSWNKFSgHLPLLiREMANLTTLILHN 424
Cdd:COG4886   188 DLSNN----QITDLPEPLGNLT--NLEELDLSGNQLTDLPEPLANLTNLETLDLSNNQLT-DLPEL-GNLTNLEELDLSN 259

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 425 NNISGVisnQHLSGLESLERIIMSYNPLKVVLDESWSPPFGLFDVYFASCQLGPEFPVWIKSLNNCYSIDVSSSGIKDEL 504
Cdd:COG4886   260 NQLTDL---PPLANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVT 336

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1002224252 505 PNWFWNLVSDVANVNISHNQIRGKLPDSFQGMSTEKLILASNQLTGRLPSLQENLYYLDISRNLL 569
Cdd:COG4886   337 LTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLALLLLTLLLLLLTTTAGVL 401
LRRNT_2 pfam08263
Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence ...
 52-88 3.16e-07

Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats.


Pssm-ID: 462411 [Multi-domain]  Cd Length: 41  Bit Score: 47.29  E-value: 3.16e-07
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1002224252  52 ERDALLSFKAGITrDPKKRLSSWL--GENCCQWSGVRCS 88
Cdd:pfam08263   4 DGQALLAFKSSLN-DPPGALSSWNssSSDPCSWTGVTCD 41
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
 131-404 1.09e-06

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 51.20  E-value: 1.09e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 131 SLRQLKRLDLSGNVLGESMPEFLGS----FQSLTHLNLARM------GFYGRVPHQLGNLSNLQFLDI-TSEIYDHPPmh 199
Cdd:cd00116    21 KLLCLQVLRLEGNTLGEEAAKALASalrpQPSLKELCLSLNetgripRGLQSLLQGLTKGCGLQELDLsDNALGPDGC-- 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 200 tADISWLARLPSLKYLDMSYVNLSSvvdwvRPVNML--------SRLEVLRLTGCWIMSSSSTGLTNL----TSLETLDL 267
Cdd:cd00116    99 -GVLESLLRSSSLQELKLNNNGLGD-----RGLRLLakglkdlpPALEKLVLGRNRLEGASCEALAKAlranRDLKELNL 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 268 SENTLFGTVIPNWVWSMKtvkmlnlASCQLSgsfPDGLGNLTLLEglnlggdsyHGSNSFEGTLPSTlnntCNLRVLYLN 347
Cdd:cd00116   173 ANNGIGDAGIRALAEGLK-------ANCNLE---VLDLNNNGLTD---------EGASALAETLASL----KSLEVLNLG 229

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1002224252 348 ENLIGVE-IKDLMDKLPScTWNKLEELDLSYNDITGN-----LDWLGSQTSLTSLYLSWNKFS 404
Cdd:cd00116   230 DNNLTDAgAAALASALLS-PNISLLTLSLSCNDITDDgakdlAEVLAEKESLLELDLRGNKFG 291
 
Name Accession Description Interval E-value
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 50-683 2.11e-53

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 198.92  E-value: 2.11e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252  50 AAERDALLSFKAGItRDPKKRLSSWLGEN-CCQWSGVRCSNrTGHVIILNLSNTylyyddphyykcahvdfPLYGYISSS 128
Cdd:PLN00113   28 AEELELLLSFKSSI-NDPLKYLSNWNSSAdVCLWQGITCNN-SSRVVSIDLSGK-----------------NISGKISSA 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 129 LVSLRQLKRLDLSGNVLGESMPE-FLGSFQSLTHLNLARMGFYGRVPHqlGNLSNLQFLDITSEiydhppMHTADIswla 207
Cdd:PLN00113   89 IFRLPYIQTINLSNNQLSGPIPDdIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNN------MLSGEI---- 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 208 rlpslkYLDMSyvnlssvvdwvrpvnMLSRLEVLRLTGCWIMSSSSTGLTNLTSLETLDLSENTLFGTvIPNWVWSMKTV 287
Cdd:PLN00113  157 ------PNDIG---------------SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQ-IPRELGQMKSL 214

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 288 KMLNLASCQLSGSFPDGLGNLTLLEGLNLggdSYhgsNSFEGTLPSTLNNTCNLRVLYLNENligveikDLMDKLPSCTW 367
Cdd:PLN00113  215 KWIYLGYNNLSGEIPYEIGGLTSLNHLDL---VY---NNLTGPIPSSLGNLKNLQYLFLYQN-------KLSGPIPPSIF 281

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 368 N--KLEELDLSYNDITGNLDWLGSQ-TSLTSLYLSWNKFSGHLPLLIREMANLTTLILHNNNISGVISnQHLSGLESLER 444
Cdd:PLN00113  282 SlqKLISLDLSDNSLSGEIPELVIQlQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP-KNLGKHNNLTV 360

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 445 IIMSYNPLKVVLDESWSPPFGLFDVYFASCQLGPEFPvwiKSLNNCYS---IDVSSSGIKDELPNWFWNLvSDVANVNIS 521
Cdd:PLN00113  361 LDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIP---KSLGACRSlrrVRLQDNSFSGELPSEFTKL-PLVYFLDIS 436

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 522 HNQIRGKLPDSFQGM-STEKLILASNQLTGRLPSL--QENLYYLDISRNLLSGPLPFHFGG-ANLGKLILFSNHINGSIP 597
Cdd:PLN00113  437 NNNLQGRINSRKWDMpSLQMLSLARNKFFGGLPDSfgSKRLENLDLSRNQFSGAVPRKLGSlSELMQLKLSENKLSGEIP 516

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 598 QSLCKMHNLGALDLADNFLVGELPhclptelkpstgGSFIHSTSLNIhiLLLSKNQLSGEFPMLLQSCQSITILDLAWNK 677
Cdd:PLN00113  517 DELSSCKKLVSLDLSHNQLSGQIP------------ASFSEMPVLSQ--LDLSQNQLSGEIPKNLGNVESLVQVNISHNH 582


                  ....*.
gi 1002224252 678 YSGKLP 683
Cdd:PLN00113  583 LHGSLP 588
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 212-714 2.41e-35

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 143.84  E-value: 2.41e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 212 LKYLDmSYVNLSSVVDWVRPV-NMLSRLEVLRLTGCWIMSSSSTGLTNLTSLETLDLSENTLFGTVIPNWVWSMKTVKML 290
Cdd:PLN00113   45 LKYLS-NWNSSADVCLWQGITcNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYL 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 291 NLASCQLSGSFPDGlgNLTLLEGLNLGgdsyhgSNSFEGTLPSTLNNTCNLRVLYLNENLigveikdLMDKLPSCTWN-- 368
Cdd:PLN00113  124 NLSNNNFTGSIPRG--SIPNLETLDLS------NNMLSGEIPNDIGSFSSLKVLDLGGNV-------LVGKIPNSLTNlt 188

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 369 KLEELDLSYNDITGNLDW-LGSQTSLTSLYLSWNKFSGHLPLLIREMANLTTLILHNNNISGVISNQhLSGLESLERIIM 447
Cdd:PLN00113  189 SLEFLTLASNQLVGQIPReLGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFL 267

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 448 SYNPLKvvldeswsppfglfdvyfascqlGPeFPVWIKSLNNCYSIDVSSSGIKDELPNwfwnLVSDVANVNISH---NQ 524
Cdd:PLN00113  268 YQNKLS-----------------------GP-IPPSIFSLQKLISLDLSDNSLSGEIPE----LVIQLQNLEILHlfsNN 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 525 IRGKLPDSFQGMSTEKLI-LASNQLTGRLPS---LQENLYYLDISRNLLSGPLPFHF-GGANLGKLILFSNHINGSIPQS 599
Cdd:PLN00113  320 FTGKIPVALTSLPRLQVLqLWSNKFSGEIPKnlgKHNNLTVLDLSTNNLTGEIPEGLcSSGNLFKLILFSNSLEGEIPKS 399

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 600 LCKMHNLGALDLADNFLVGELPHCLpTELkPSTGGSFIHSTSL------------NIHILLLSKNQLSGEFPMLLQScQS 667
Cdd:PLN00113  400 LGACRSLRRVRLQDNSFSGELPSEF-TKL-PLVYFLDISNNNLqgrinsrkwdmpSLQMLSLARNKFFGGLPDSFGS-KR 476

                         490       500       510       520       530
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1002224252 668 ITILDLAWNKYSGKLPEWIGeKLPSIVIL------LSGLISSLVISQVVLPNL 714
Cdd:PLN00113  477 LENLDLSRNQFSGAVPRKLG-SLSELMQLklsenkLSGEIPDELSSCKKLVSL 528
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
200-569 6.49e-18

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 86.91  E-value: 6.49e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 200 TADISWLARLPSLKYLDMSYVNLSSVVDWVRPVNMLSRLEVLRLTGCWIMSSSSTGLTNLTSLETLDLSENTLFG----- 274
Cdd:COG4886    36 ALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGNEELSnltnl 115

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 275 ----------TVIPNWVWSMKTVKMLNLASCQLSgSFPDGLGNLTLLEGLNLGGdsyhgsNSFEgTLPSTLNNTCNLRVL 344
Cdd:COG4886   116 esldlsgnqlTDLPEELANLTNLKELDLSNNQLT-DLPEPLGNLTNLKSLDLSN------NQLT-DLPEELGNLTNLKEL 187

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 345 YLNENligvEIKDLMDKLPSCTwnKLEELDLSYNDITGNLDWLGSQTSLTSLYLSWNKFSgHLPLLiREMANLTTLILHN 424
Cdd:COG4886   188 DLSNN----QITDLPEPLGNLT--NLEELDLSGNQLTDLPEPLANLTNLETLDLSNNQLT-DLPEL-GNLTNLEELDLSN 259

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 425 NNISGVisnQHLSGLESLERIIMSYNPLKVVLDESWSPPFGLFDVYFASCQLGPEFPVWIKSLNNCYSIDVSSSGIKDEL 504
Cdd:COG4886   260 NQLTDL---PPLANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVT 336

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1002224252 505 PNWFWNLVSDVANVNISHNQIRGKLPDSFQGMSTEKLILASNQLTGRLPSLQENLYYLDISRNLL 569
Cdd:COG4886   337 LTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLALLLLTLLLLLLTTTAGVL 401
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
174-489 2.98e-17

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 84.60  E-value: 2.98e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 174 PHQLGNLSNLQFLDItseiydhppmhtADISWLARLPSLKYLDMSYVNLSSVVDWVRPvnmLSRLEVLRLTGCWImSSSS 253
Cdd:COG4886    89 LTDLGDLTNLTELDL------------SGNEELSNLTNLESLDLSGNQLTDLPEELAN---LTNLKELDLSNNQL-TDLP 152

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 254 TGLTNLTSLETLDLSENTLfgTVIPNWVWSMKTVKMLNLASCQLSgSFPDGLGNLTLLEGLNLGGdsyhgsNSFEgTLPS 333
Cdd:COG4886   153 EPLGNLTNLKSLDLSNNQL--TDLPEELGNLTNLKELDLSNNQIT-DLPEPLGNLTNLEELDLSG------NQLT-DLPE 222

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 334 TLNNTCNLRVLYLNENLIgveikdlmDKLPS-CTWNKLEELDLSYNDITgNLDWLGSQTSLTSLYLSWNKFSGHLPLLIR 412
Cdd:COG4886   223 PLANLTNLETLDLSNNQL--------TDLPElGNLTNLEELDLSNNQLT-DLPPLANLTNLKTLDLSNNQLTDLKLKELE 293

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1002224252 413 EMANLTTLILHNNNISGVISNQHLSGLESLERIIMSYNPLKVVLDESWSPPFGLFDVYFASCQLGPEFPVWIKSLNN 489
Cdd:COG4886   294 LLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLG 370
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
121-442 8.27e-16

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 80.36  E-value: 8.27e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 121 LYGYISSSLVSLRQLKRLDLSGNVLgESMPEFLGSFQSLTHLNLARMGFyGRVPHQLGNLSNLQFLDITS-EIYDHPpmh 199
Cdd:COG4886   101 LDLSGNEELSNLTNLESLDLSGNQL-TDLPEELANLTNLKELDLSNNQL-TDLPEPLGNLTNLKSLDLSNnQLTDLP--- 175

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 200 tadiSWLARLPSLKYLDMSYVNLSsvvDWVRPVNMLSRLEVLRLTGCWImSSSSTGLTNLTSLETLDLSENTLfgTVIPn 279
Cdd:COG4886   176 ----EELGNLTNLKELDLSNNQIT---DLPEPLGNLTNLEELDLSGNQL-TDLPEPLANLTNLETLDLSNNQL--TDLP- 244

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 280 WVWSMKTVKMLNLASCQLSgSFPDgLGNLTLLEGLNLGGDSYHGSNSFEGTLPSTLNNTCNLRVLYLNENLIGVEIKDLM 359
Cdd:COG4886   245 ELGNLTNLEELDLSNNQLT-DLPP-LANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTT 322

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 360 DKLPSCTWNKLEELDLSYNDITGNLDWLGSQTSLTSLYLSWNKFSGHLPLLIREMANLTTLILHNNNISGVISNQHLSGL 439
Cdd:COG4886   323 LLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLALLLLTLLLLLLTTTAGVLL 402


                  ...
gi 1002224252 440 ESL 442
Cdd:COG4886   403 LTL 405
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
124-442 2.77e-15

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 78.82  E-value: 2.77e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 124 YISSSLVSLRQLKRLDLSGNvlgesmpEFLGSFQSLTHLNLARMGFyGRVPHQLGNLSNLQFLDITS-EIYDHPpmhtad 202
Cdd:COG4886    87 LGLTDLGDLTNLTELDLSGN-------EELSNLTNLESLDLSGNQL-TDLPEELANLTNLKELDLSNnQLTDLP------ 152

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 203 iSWLARLPSLKYLDMSYVNLSSVvdwvrpvnmlsrlevlrltgcwimsssSTGLTNLTSLETLDLSENTLfgTVIPNWVW 282
Cdd:COG4886   153 -EPLGNLTNLKSLDLSNNQLTDL---------------------------PEELGNLTNLKELDLSNNQI--TDLPEPLG 202

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 283 SMKTVKMLNLASCQLSgSFPDGLGNLTLLEGLNLGGdsyhgsNSFEgTLPSTLNNTcNLRVLYLNENligvEIKDLmdkL 362
Cdd:COG4886   203 NLTNLEELDLSGNQLT-DLPEPLANLTNLETLDLSN------NQLT-DLPELGNLT-NLEELDLSNN----QLTDL---P 266

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 363 PSCTWNKLEELDLSYNDITG-NLDWLGSQTSLTSLYLSWNKFSGHLPLLIREMANLTTLILHNNNISGVISNQHLSGLES 441
Cdd:COG4886   267 PLANLTNLKTLDLSNNQLTDlKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSL 346


                  .
gi 1002224252 442 L 442
Cdd:COG4886   347 L 347
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
264-664 4.83e-15

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 78.05  E-value: 4.83e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 264 TLDLSENTLFGTVIPNWVWSMKTVKMLNLASCQLSGSFPDGLGNLTLLEGLNLGGDSYHGSNSFEGTLPSTLNNTCNLRV 343
Cdd:COG4886     1 LLLLLLSLTLKLLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 344 LYLNENLIGVEIKDLMdklpsctwnKLEELDLSYNDITGNLdwlgsqTSLTSLYLSWNKFSgHLPLLIREMANLTTLILH 423
Cdd:COG4886    81 LLSLLLLGLTDLGDLT---------NLTELDLSGNEELSNL------TNLESLDLSGNQLT-DLPEELANLTNLKELDLS 144

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 424 NNNISGVISNqhLSGLESLERIIMSYNPLKvvldeswsppfglfdvyfascqlgpEFPVWIKSLNNCYSIDVSSSGIKDe 503
Cdd:COG4886   145 NNQLTDLPEP--LGNLTNLKSLDLSNNQLT-------------------------DLPEELGNLTNLKELDLSNNQITD- 196

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 504 LPNWFWNLVSdVANVNISHNQIRgKLPDSFQGMST-EKLILASNQLTgRLPSLQE--NLYYLDISRNLLSGpLPFHFGGA 580
Cdd:COG4886   197 LPEPLGNLTN-LEELDLSGNQLT-DLPEPLANLTNlETLDLSNNQLT-DLPELGNltNLEELDLSNNQLTD-LPPLANLT 272

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 581 NLGKLILFSNHINGSIPQSLCKMHNLGALDLADNFLVGELPHCLPTELKPSTGGSFIHSTSLNIHILLLSKNQLSGEFPM 660
Cdd:COG4886   273 NLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTL 352


                  ....
gi 1002224252 661 LLQS 664
Cdd:COG4886   353 LLLL 356
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
256-654 6.31e-15

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 77.67  E-value: 6.31e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 256 LTNLTSLETLDLSENTLFGTVIPNWVWSMKTVKMLNLASCQLSGSFPDGLGNLTLLEGLNLGGDSYHGSNSFEGTLPSTL 335
Cdd:COG4886     2 LLLLLSLTLKLLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 336 NNTCNLRVLYLnENLIGVEIKDLMDKLPSCTWNKLEELDLSYNDITGNLDWLGSQTSLTSLYLSWNKFSgHLPLLIREMA 415
Cdd:COG4886    82 LSLLLLGLTDL-GDLTNLTELDLSGNEELSNLTNLESLDLSGNQLTDLPEELANLTNLKELDLSNNQLT-DLPEPLGNLT 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 416 NLTTLILHNNNISGVisNQHLSGLESLERIIMSYNPLKvvldeswsppfglfdvyfascqlgpEFPVWIKSLNNCYSIDV 495
Cdd:COG4886   160 NLKSLDLSNNQLTDL--PEELGNLTNLKELDLSNNQIT-------------------------DLPEPLGNLTNLEELDL 212

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 496 SSSGIKDeLPNWFWNLVSdVANVNISHNQIRgKLPDSFQGMSTEKLILASNQLTGrLPSLQE--NLYYLDISRNLLSgpl 573
Cdd:COG4886   213 SGNQLTD-LPEPLANLTN-LETLDLSNNQLT-DLPELGNLTNLEELDLSNNQLTD-LPPLANltNLKTLDLSNNQLT--- 285

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 574 pfhfgGANLGKLILFSNHINGSIPQSLCKMHNLGALDLADNFLVGELPHCLPTELKPSTGGSFIHSTSLNIHILLLSKNQ 653
Cdd:COG4886   286 -----DLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLS 360


                  .
gi 1002224252 654 L 654
Cdd:COG4886   361 L 361
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 121-334 3.12e-12

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 70.26  E-value: 3.12e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 121 LYGYISSSLVSLRQLKRLDLSGNVLGESMPEFLGSFQSLTHLNLARMGFYGRVPHQLGNLSNLQFLDIT---------SE 191
Cdd:PLN00113  368 LTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISnnnlqgrinSR 447

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 192 IYDHPPMHTADIS---WLARLP------SLKYLDMSYVNLSSVVDwvRPVNMLSRLEVLRLTGCWIMSSSSTGLTNLTSL 262
Cdd:PLN00113  448 KWDMPSLQMLSLArnkFFGGLPdsfgskRLENLDLSRNQFSGAVP--RKLGSLSELMQLKLSENKLSGEIPDELSSCKKL 525

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1002224252 263 ETLDLSENTLFGTvIPNWVWSMKTVKMLNLASCQLSGSFPDGLGNLTLLEGLNLGGDSYHGSnsfegtLPST 334
Cdd:PLN00113  526 VSLDLSHNQLSGQ-IPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGS------LPST 590
PLN03150 PLN03150
hypothetical protein; Provisional
 472-644 1.36e-07

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 54.82  E-value: 1.36e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 472 ASCQLGPEFPVWIKSlnncySIDVSSSGIKDELPNwFWNLVSDVANVNISHNQIRGKLPDSFqgmsteklilasnqltGR 551
Cdd:PLN03150  407 ADCQFDSTKGKWFID-----GLGLDNQGLRGFIPN-DISKLRHLQSINLSGNSIRGNIPPSL----------------GS 464

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 552 LPSLQenlyYLDISRNLLsgplpfhfgganlgklilfsnhiNGSIPQSLCKMHNLGALDLADNFLVGELPHCLptelkps 631
Cdd:PLN03150  465 ITSLE----VLDLSYNSF-----------------------NGSIPESLGQLTSLRILNLNGNSLSGRVPAAL------- 510

                         170
                  ....*....|...
gi 1002224252 632 tGGSFIHSTSLNI 644
Cdd:PLN03150  511 -GGRLLHRASFNF 522
PLN03150 PLN03150
hypothetical protein; Provisional
 74-188 2.00e-07

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 54.44  E-value: 2.00e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252  74 WLGENCCQ----WSGVRCS--NRTGHVII--LNLSNTylyyddphyykcahvdfPLYGYISSSLVSLRQLKRLDLSGNVL 145
Cdd:PLN03150  392 WNGDPCVPqqhpWSGADCQfdSTKGKWFIdgLGLDNQ-----------------GLRGFIPNDISKLRHLQSINLSGNSI 454

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1002224252 146 GESMPEFLGSFQSLTHLNLARMGFYGRVPHQLGNLSNLQFLDI 188
Cdd:PLN03150  455 RGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497
LRRNT_2 pfam08263
Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence ...
 52-88 3.16e-07

Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats.


Pssm-ID: 462411 [Multi-domain]  Cd Length: 41  Bit Score: 47.29  E-value: 3.16e-07
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1002224252  52 ERDALLSFKAGITrDPKKRLSSWL--GENCCQWSGVRCS 88
Cdd:pfam08263   4 DGQALLAFKSSLN-DPPGALSSWNssSSDPCSWTGVTCD 41
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
 131-404 1.09e-06

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 51.20  E-value: 1.09e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 131 SLRQLKRLDLSGNVLGESMPEFLGS----FQSLTHLNLARM------GFYGRVPHQLGNLSNLQFLDI-TSEIYDHPPmh 199
Cdd:cd00116    21 KLLCLQVLRLEGNTLGEEAAKALASalrpQPSLKELCLSLNetgripRGLQSLLQGLTKGCGLQELDLsDNALGPDGC-- 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 200 tADISWLARLPSLKYLDMSYVNLSSvvdwvRPVNML--------SRLEVLRLTGCWIMSSSSTGLTNL----TSLETLDL 267
Cdd:cd00116    99 -GVLESLLRSSSLQELKLNNNGLGD-----RGLRLLakglkdlpPALEKLVLGRNRLEGASCEALAKAlranRDLKELNL 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 268 SENTLFGTVIPNWVWSMKtvkmlnlASCQLSgsfPDGLGNLTLLEglnlggdsyHGSNSFEGTLPSTlnntCNLRVLYLN 347
Cdd:cd00116   173 ANNGIGDAGIRALAEGLK-------ANCNLE---VLDLNNNGLTD---------EGASALAETLASL----KSLEVLNLG 229

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1002224252 348 ENLIGVE-IKDLMDKLPScTWNKLEELDLSYNDITGN-----LDWLGSQTSLTSLYLSWNKFS 404
Cdd:cd00116   230 DNNLTDAgAAALASALLS-PNISLLTLSLSCNDITDDgakdlAEVLAEKESLLELDLRGNKFG 291
PLN03150 PLN03150
hypothetical protein; Provisional
 259-335 2.30e-06

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 50.97  E-value: 2.30e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1002224252 259 LTSLETLDLSENTLFGtVIPNWVWSMKTVKMLNLASCQLSGSFPDGLGNLTLLEGLNLGGdsyhgsNSFEGTLPSTL 335
Cdd:PLN03150  441 LRHLQSINLSGNSIRG-NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG------NSLSGRVPAAL 510
PLN03150 PLN03150
hypothetical protein; Provisional
 347-429 2.48e-06

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 50.97  E-value: 2.48e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 347 NENLIGVeIKDLMDKLpsctwNKLEELDLSYNDITGNLDW-LGSQTSLTSLYLSWNKFSGHLPLLIREMANLTTLILHNN 425
Cdd:PLN03150  427 NQGLRGF-IPNDISKL-----RHLQSINLSGNSIRGNIPPsLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500


                  ....
gi 1002224252 426 NISG 429
Cdd:PLN03150  501 SLSG 504
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
501-714 6.55e-06

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 49.70  E-value: 6.55e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 501 KDELPNWFWNLVSDVANVNISHNQ---IRGKLPDSFQGM----------------STEKLILASNQLTGRLPSLQENLYY 561
Cdd:PRK15370  208 NNELKSLPENLQGNIKTLYANSNQltsIPATLPDTIQEMelsinritelperlpsALQSLDLFHNKISCLPENLPEELRY 287

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 562 LDISRNLLSGpLPFHFgGANLGKLILFSNHINgSIPQSLCKmhNLGALDLADNFLVGeLPHCLPTELKpstggsfihsts 641
Cdd:PRK15370  288 LSVYDNSIRT-LPAHL-PSGITHLNVQSNSLT-ALPETLPP--GLKTLEAGENALTS-LPASLPPELQ------------ 349

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1002224252 642 lnihILLLSKNQLSgEFPMLLQScqSITILDLAWNKYSgKLPewigEKLPSIVILLSGLISSLVISQVVLPNL 714
Cdd:PRK15370  350 ----VLDVSKNQIT-VLPETLPP--TITTLDVSRNALT-NLP----ENLPAALQIMQASRNNLVRLPESLPHF 410
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 344-443 6.77e-06

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 47.86  E-value: 6.77e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 344 LYLNENLIgveikDLMDKLPSCTwnKLEELDLSYNDITgNLDWLGSQTSLTSLYLSWNKfsghlpllIREMANLTTLI-- 421
Cdd:cd21340     7 LYLNDKNI-----TKIDNLSLCK--NLKVLYLYDNKIT-KIENLEFLTNLTHLYLQNNQ--------IEKIENLENLVnl 70

                          90       100
                  ....*....|....*....|....*.
gi 1002224252 422 ----LHNNNISgVISNqhLSGLESLE 443
Cdd:cd21340    71 kklyLGGNRIS-VVEG--LENLTNLE 93
PLN03150 PLN03150
hypothetical protein; Provisional
 594-690 1.10e-05

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 48.66  E-value: 1.10e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 594 GSIPQSLCKMHNLGALDLADNFLVGELPhclptelkPSTGgsfihsTSLNIHILLLSKNQLSGEFPMLLQSCQSITILDL 673
Cdd:PLN03150  432 GFIPNDISKLRHLQSINLSGNSIRGNIP--------PSLG------SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497

                          90
                  ....*....|....*..
gi 1002224252 674 AWNKYSGKLPEWIGEKL 690
Cdd:PLN03150  498 NGNSLSGRVPAALGGRL 514
PLN03150 PLN03150
hypothetical protein; Provisional
 265-349 2.29e-05

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 47.89  E-value: 2.29e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 265 LDLSENTLFGtVIPNWVWSMKTVKMLNLASCQLSGSFPDGLGNLTLLEGLNLggdSYhgsNSFEGTLPSTLNNTCNLRVL 344
Cdd:PLN03150  423 LGLDNQGLRG-FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDL---SY---NSFNGSIPESLGQLTSLRIL 495


                  ....*
gi 1002224252 345 YLNEN 349
Cdd:PLN03150  496 NLNGN 500
PLN03150 PLN03150
hypothetical protein; Provisional
 270-408 1.29e-04

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 45.19  E-value: 1.29e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 270 NTLFGTVIPNWVwsmktVKMLNLASCQLSGSFPDGLGNLTLLEGLNLGGdsyhgsNSFEGTLPSTLNNTCNLRVLylnen 349
Cdd:PLN03150  408 DCQFDSTKGKWF-----IDGLGLDNQGLRGFIPNDISKLRHLQSINLSG------NSIRGNIPPSLGSITSLEVL----- 471

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 350 ligveikdlmdklpsctwnkleelDLSYNDITGNL-DWLGSQTSLTSLYLSWNKFSGHLP 408
Cdd:PLN03150  472 ------------------------DLSYNSFNGSIpESLGQLTSLRILNLNGNSLSGRVP 507
PLN03150 PLN03150
hypothetical protein; Provisional
 630-697 1.66e-04

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 44.81  E-value: 1.66e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1002224252 630 PSTGGSFIHSTSLNihillLSKNQLSGEFPMLLQSCQSITILDLAWNKYSGKLPEWIGEkLPSIVILL 697
Cdd:PLN03150  435 PNDISKLRHLQSIN-----LSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ-LTSLRILN 496
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 129-270 2.83e-04

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 42.85  E-value: 2.83e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 129 LVSLRQLKRLDLSGNVLgESMpEFLGSFQSLTHLNLArmGFYGRVPHQLGNLSNLQFLDITSEIYDHP-PMHTADISWLA 207
Cdd:cd21340    42 LEFLTNLTHLYLQNNQI-EKI-ENLENLVNLKKLYLG--GNRISVVEGLENLTNLEELHIENQRLPPGeKLTFDPRSLAA 117

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1002224252 208 RLPSLKYLDMSYVNLSSVvdwvRPVNMLSRLEVLRLTGCWIMSSSSTG--LTNLTSLETLDLSEN 270
Cdd:cd21340   118 LSNSLRVLNISGNNIDSL----EPLAPLRNLEQLDASNNQISDLEELLdlLSSWPSLRELDLTGN 178
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 335-452 1.08e-03

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 40.92  E-value: 1.08e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 335 LNNTCNLRVLYLNENLIGvEIKDLmDKLPsctwnKLEELDLSYNDITgNLDWLGSQTSLTSLYLSWNKFSGHLPLLIREM 414
Cdd:cd21340    42 LEFLTNLTHLYLQNNQIE-KIENL-ENLV-----NLKKLYLGGNRIS-VVEGLENLTNLEELHIENQRLPPGEKLTFDPR 113

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1002224252 415 A------NLTTLILHNNNISgviSNQHLSGLESLERIIMSYNPL 452
Cdd:cd21340   114 SlaalsnSLRVLNISGNNID---SLEPLAPLRNLEQLDASNNQI 154
LRR_8 pfam13855
Leucine rich repeat;
391-452 1.44e-03

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 37.50  E-value: 1.44e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1002224252 391 TSLTSLYLSWNKFSGHLPLLIREMANLTTLILHNNNISgVISNQHLSGLESLERIIMSYNPL 452
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLT-TLSPGAFSGLPSLRYLDLSGNRL 61
RNA1 COG5238
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ...
 260-560 1.81e-03

Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];


Pssm-ID: 444072 [Multi-domain]  Cd Length: 434  Bit Score: 41.31  E-value: 1.81e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 260 TSLETLDLSENTLFGTVIPNWVWSMKTVKM----LNLASCQLSGSFPDGLGNL-TLLEGLNLGGDsYHGSNSFEGtLPST 334
Cdd:COG5238   126 TLEDSLILYLALPRRINLIQVLKDPLGGNAvhllGLAARLGLLAAISMAKALQnNSVETVYLGCN-QIGDEGIEE-LAEA 203

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 335 LNNTCNLRVLYLNENLIGVE-IKDLMDKLpsCTWNKLEELDLSYNDITGN-----LDWLGSQTSLTSLYLSWNKfsghlp 408
Cdd:COG5238   204 LTQNTTVTTLWLKRNPIGDEgAEILAEAL--KGNKSLTTLDLSNNQIGDEgvialAEALKNNTTVETLYLSGNQ------ 275

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 409 lliremanlttlILHNnnisGVIS-NQHLSGLESLERIIMSYNPLK----VVLDESWSPPFGLFDVYFASCQLGPEFPVW 483
Cdd:COG5238   276 ------------IGAE----GAIAlAKALQGNTTLTSLDLSVNRIGdegaIALAEGLQGNKTLHTLNLAYNGIGAQGAIA 339

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 484 I----KSLNNCYSIDVSSSGIKDE----LPNwFWNLVSDVANVNISHNQI----RGKLPDSFQGMSTEKLILASNQLTGR 551
Cdd:COG5238   340 LakalQENTTLHSLDLSDNQIGDEgaiaLAK-YLEGNTTLRELNLGKNNIgkqgAEALIDALQTNRLHTLILDGNLIGAE 418


                  ....*....
gi 1002224252 552 LPSLQENLY 560
Cdd:COG5238   419 AQQRLEQLL 427
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 335-428 4.79e-03

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 39.00  E-value: 4.79e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224252 335 LNNTCNLRVLYLNENLIGVeIKDLmDKLPSctwnkLEELDLSYN-------------------------DITGN----LD 385
Cdd:cd21340    64 LENLVNLKKLYLGGNRISV-VEGL-ENLTN-----LEELHIENQrlppgekltfdprslaalsnslrvlNISGNnidsLE 136

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1002224252 386 WLGSQTSLTSLYLSWNKFSGHLPL--LIREMANLTTLILHNNNIS 428
Cdd:cd21340   137 PLAPLRNLEQLDASNNQISDLEELldLLSSWPSLRELDLTGNPVC 181
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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