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Conserved domains on  [gi|1002254303|ref|XP_015631408|]
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wound-induced protein 1 [Oryza sativa Japonica Group]

Protein Classification

WI12 superfamily protein( domain architecture ID 1904797)

WI12 superfamily protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
WI12 super family cl42057
Wound-induced protein WI12; This family consists of several plant wound-induced protein ...
 2-124 1.24e-50

Wound-induced protein WI12; This family consists of several plant wound-induced protein sequences related to WI12 from Mesembryanthemum crystallinum. Wounding, methyl jasmonate, and pathogen infection is known to induce local WI12 expression. WI12 expression is also thought to be developmentally controlled in the placenta and developing seeds. WI12 preferentially accumulates in the cell wall and it has been suggested that it plays a role in the reinforcement of cell wall composition after wounding and during plant development. This family seems partly related to the NTF2-like superfamily.


The actual alignment was detected with superfamily member pfam07107:

Pssm-ID: 477929  Cd Length: 104  Bit Score: 155.82  E-value: 1.24e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254303   2 MRLLTGADHGESRFLFSPRSVDAFGSTVIAEGTDDTRQLYWVHAWTVGpDGVITQLREYFNTDLTVTRLSASAAKTTAAI 81
Cdd:pfam07107   1 MRLLTGAPPRQSSFRFEPSSVDVFGSTVIAEGCDETRSIYWVHAWTVK-DGVITQLREYFNTSLTVTRYSLSAAGWDTAS 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1002254303  82 sssnsnhasssapppppsKPKCLWQSRRADRAHKSLPGLVLAI 124
Cdd:pfam07107  80 ------------------HCCSVWESVPRDRAGKSLPGLVLAI 104
 
Name Accession Description Interval E-value
WI12 pfam07107
Wound-induced protein WI12; This family consists of several plant wound-induced protein ...
 2-124 1.24e-50

Wound-induced protein WI12; This family consists of several plant wound-induced protein sequences related to WI12 from Mesembryanthemum crystallinum. Wounding, methyl jasmonate, and pathogen infection is known to induce local WI12 expression. WI12 expression is also thought to be developmentally controlled in the placenta and developing seeds. WI12 preferentially accumulates in the cell wall and it has been suggested that it plays a role in the reinforcement of cell wall composition after wounding and during plant development. This family seems partly related to the NTF2-like superfamily.


Pssm-ID: 429297  Cd Length: 104  Bit Score: 155.82  E-value: 1.24e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254303   2 MRLLTGADHGESRFLFSPRSVDAFGSTVIAEGTDDTRQLYWVHAWTVGpDGVITQLREYFNTDLTVTRLSASAAKTTAAI 81
Cdd:pfam07107   1 MRLLTGAPPRQSSFRFEPSSVDVFGSTVIAEGCDETRSIYWVHAWTVK-DGVITQLREYFNTSLTVTRYSLSAAGWDTAS 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1002254303  82 sssnsnhasssapppppsKPKCLWQSRRADRAHKSLPGLVLAI 124
Cdd:pfam07107  80 ------------------HCCSVWESVPRDRAGKSLPGLVLAI 104
 
Name Accession Description Interval E-value
WI12 pfam07107
Wound-induced protein WI12; This family consists of several plant wound-induced protein ...
 2-124 1.24e-50

Wound-induced protein WI12; This family consists of several plant wound-induced protein sequences related to WI12 from Mesembryanthemum crystallinum. Wounding, methyl jasmonate, and pathogen infection is known to induce local WI12 expression. WI12 expression is also thought to be developmentally controlled in the placenta and developing seeds. WI12 preferentially accumulates in the cell wall and it has been suggested that it plays a role in the reinforcement of cell wall composition after wounding and during plant development. This family seems partly related to the NTF2-like superfamily.


Pssm-ID: 429297  Cd Length: 104  Bit Score: 155.82  E-value: 1.24e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254303   2 MRLLTGADHGESRFLFSPRSVDAFGSTVIAEGTDDTRQLYWVHAWTVGpDGVITQLREYFNTDLTVTRLSASAAKTTAAI 81
Cdd:pfam07107   1 MRLLTGAPPRQSSFRFEPSSVDVFGSTVIAEGCDETRSIYWVHAWTVK-DGVITQLREYFNTSLTVTRYSLSAAGWDTAS 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1002254303  82 sssnsnhasssapppppsKPKCLWQSRRADRAHKSLPGLVLAI 124
Cdd:pfam07107  80 ------------------HCCSVWESVPRDRAGKSLPGLVLAI 104
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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