|
Name |
Accession |
Description |
Interval |
E-value |
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
177-469 |
2.57e-19 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 93.79 E-value: 2.57e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 177 YTSLIAAYARNALHEEARELLDQMKASGVAPTAATYNTVLAACARATDPPVPFdmllGLFAEMRhdpSPSVRPDLTTYNT 256
Cdd:PLN03218 475 YTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF----GAYGIMR---SKNVKPDRVVFNA 547
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 257 LLAAAAVRALSDQSEMLLRTM-LEAG-VLPDTASYRHIVDAFAGAGNLSRVAELFAEMSATGHTPDPSAYLGLMEAHTLV 334
Cdd:PLN03218 548 LISACGQSGAVDRAFDVLAEMkAETHpIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQK 627
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 335 GATAEAVAVLRQMQADGCPPTAATYRVLLDLYGRQGRFDGVRELFREMRTT-VPPDTATYNVLFRVFGDGGFFKEVVELF 413
Cdd:PLN03218 628 GDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQgIKLGTVSYSSLMGACSNAKNWKKALELY 707
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 1002254315 414 QDMLHSEVEPDIDTCENVMVACGRGGLHEDAREVLDYITTEGMVPTAKAYTGLVEA 469
Cdd:PLN03218 708 EDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
340-629 |
1.89e-13 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 74.53 E-value: 1.89e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 340 AVAVLRQMQADGCPPTAATYRVLLDLYGRQGRFDGVRELFREMRTT-VPPDTATYNVLFRVFGDGGFFKEVVELFQDMLH 418
Cdd:PLN03218 456 ALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAgVEANVHTFGALIDGCARAGQVAKAFGAYGIMRS 535
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 419 SEVEPDIDTCENVMVACGRGGLHEDAREVLDYITTEG--MVPTAKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIE 496
Cdd:PLN03218 536 KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAEThpIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPE 615
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 497 TYNALANAFAKGGLFQEAEAIFSRMTNNAaIQKDKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLEGVLNAY 576
Cdd:PLN03218 616 VYTIAVNSCSQKGDWDFALSIYDDMKKKG-VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGAC 694
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1002254315 577 CIAGVIDESKEQFEELQSMVTVPSIIAYCMMLSLYARNDRWTDAYDLLEEMKT 629
Cdd:PLN03218 695 SNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR 747
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
176-221 |
4.34e-10 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 55.83 E-value: 4.34e-10
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 1002254315 176 SYTSLIAAYARNALHEEARELLDQMKASGVAPTAATYNTVLAACAR 221
Cdd:pfam13041 5 TYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
458-700 |
6.09e-08 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 55.12 E-value: 6.09e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 458 PTAKAYTGLVEALGHAA--MYEEAYVAFNMMTEIGSLpTIETYNALANAFAKGGLFQEAEAIFSRmtnnaAIQKDKDSFD 535
Cdd:COG2956 4 PVAAALGWYFKGLNYLLngQPDKAIDLLEEALELDPE-TVEAHLALGNLYRRRGEYDRAIRIHQK-----LLERDPDRAE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 536 ALIE---AYCQGAQLDDAVKAYMEMRKSRFNpDERSLEGVLNAYCIAGVIDESKEQFEELQSMVTVpSIIAYCMMLSLYA 612
Cdd:COG2956 78 ALLElaqDYLKAGLLDRAEELLEKLLELDPD-DAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPE-NAHAYCELAELYL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 613 RNDRWTDAYDLLEE-MKTNRASsthqVIASMIKGE-YDDDSNWQMVEYVLDNSnLEGCDYSLRFFNALLDVLWWFGQKGR 690
Cdd:COG2956 156 EQGDYDEAIEALEKaLKLDPDC----ARALLLLAElYLEQGDYEEAIAALERA-LEQDPDYLPALPRLAELYEKLGDPEE 230
|
250
....*....|
gi 1002254315 691 AARVLDQALK 700
Cdd:COG2956 231 ALELLRKALE 240
|
|
| SMR |
smart00463 |
Small MutS-related domain; |
714-800 |
1.00e-05 |
|
Small MutS-related domain;
Pssm-ID: 214676 [Multi-domain] Cd Length: 80 Bit Score: 44.21 E-value: 1.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 714 VWSADVHRMSVGGSLVAVSVWLNKLYDRLkgdedLPQLASVVVLRGqmeKSTVTRGLPIAKVVYSFLndtLSSSFHY-PK 792
Cdd:smart00463 1 KWSLDLHGLTVEEALTALDKFLNNARLKG-----LEQKLVIITGKG---KHSLGGKSGVKPALKEHL---RVESFRFaEE 69
|
....*...
gi 1002254315 793 WNKGRIIC 800
Cdd:smart00463 70 GNSGVLVV 77
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
176-209 |
1.85e-05 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 42.06 E-value: 1.85e-05
10 20 30
....*....|....*....|....*....|....
gi 1002254315 176 SYTSLIAAYARNALHEEARELLDQMKASGVAPTA 209
Cdd:TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
533-577 |
1.38e-04 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 40.04 E-value: 1.38e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 1002254315 533 SFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLEGVLNAYC 577
Cdd:pfam13041 5 TYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLC 49
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
533-566 |
1.77e-03 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 36.66 E-value: 1.77e-03
10 20 30
....*....|....*....|....*....|....
gi 1002254315 533 SFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDE 566
Cdd:TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
320-395 |
5.15e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 38.06 E-value: 5.15e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1002254315 320 DPSAYLGLMEAHTLVGATAEAVAVLRQ-MQADgcpPTAATYRVLL-DLYGRQGRFDGVRELFREMRTTVPPDTATYNV 395
Cdd:COG4235 50 NADALLDLAEALLAAGDTEEAEELLERaLALD---PDNPEALYLLgLAAFQQGDYAEAIAAWQKLLALLPADAPARLL 124
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
177-469 |
2.57e-19 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 93.79 E-value: 2.57e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 177 YTSLIAAYARNALHEEARELLDQMKASGVAPTAATYNTVLAACARATDPPVPFdmllGLFAEMRhdpSPSVRPDLTTYNT 256
Cdd:PLN03218 475 YTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF----GAYGIMR---SKNVKPDRVVFNA 547
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 257 LLAAAAVRALSDQSEMLLRTM-LEAG-VLPDTASYRHIVDAFAGAGNLSRVAELFAEMSATGHTPDPSAYLGLMEAHTLV 334
Cdd:PLN03218 548 LISACGQSGAVDRAFDVLAEMkAETHpIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQK 627
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 335 GATAEAVAVLRQMQADGCPPTAATYRVLLDLYGRQGRFDGVRELFREMRTT-VPPDTATYNVLFRVFGDGGFFKEVVELF 413
Cdd:PLN03218 628 GDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQgIKLGTVSYSSLMGACSNAKNWKKALELY 707
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 1002254315 414 QDMLHSEVEPDIDTCENVMVACGRGGLHEDAREVLDYITTEGMVPTAKAYTGLVEA 469
Cdd:PLN03218 708 EDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
207-565 |
4.75e-19 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 92.63 E-value: 4.75e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 207 PTAATYNTVLAACARATDppvpFDmllGLFAEMRHDPSPSVRPDLTTYNTLLAAAAVRALSDQSEMLLRTMLEAGVLPDT 286
Cdd:PLN03218 435 PTLSTFNMLMSVCASSQD----ID---GALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANV 507
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 287 ASYRHIVDAFAGAGNLSRVAELFAEMSATGHTPDPSAYLGLMEAHTLVGATAEAVAVLRQMQADGCP--PTAATYRVLLD 364
Cdd:PLN03218 508 HTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPidPDHITVGALMK 587
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 365 LYGRQGRFDGVRELFREMR-TTVPPDTATYNVLFRV---FGDGGFFKEVvelFQDMLHSEVEPDIDTCENVMVACGRGGL 440
Cdd:PLN03218 588 ACANAGQVDRAKEVYQMIHeYNIKGTPEVYTIAVNScsqKGDWDFALSI---YDDMKKKGVKPDEVFFSALVDVAGHAGD 664
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 441 HEDAREVLDYITTEGMVPTAKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYNALANAFAKGGLFQEAEAIFSR 520
Cdd:PLN03218 665 LDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSE 744
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 1002254315 521 MtNNAAIQKDKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPD 565
Cdd:PLN03218 745 M-KRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPN 788
|
|
| PLN03081 |
PLN03081 |
pentatricopeptide (PPR) repeat-containing protein; Provisional |
190-628 |
7.46e-17 |
|
pentatricopeptide (PPR) repeat-containing protein; Provisional
Pssm-ID: 215563 [Multi-domain] Cd Length: 697 Bit Score: 85.31 E-value: 7.46e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 190 HEEARELLDQMKASG-VAPTAATYNTVLAACARATDPPvpfdmllGLFAEMRHDPSPSVRPDLTTYNTllaaaavralsd 268
Cdd:PLN03081 103 HREALELFEILEAGCpFTLPASTYDALVEACIALKSIR-------CVKAVYWHVESSGFEPDQYMMNR------------ 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 269 qsemLLRTMLEAGVLPDT------------ASYRHIVDAFAGAGNLSRVAELFAEMSATGHTPDPSAYLGLMEAHTLVGA 336
Cdd:PLN03081 164 ----VLLMHVKCGMLIDArrlfdempernlASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 337 taeaVAVLRQMQAdgCPPTAATYR------VLLDLYGRQGRFDGVRELFREM--RTTVppdtaTYNVLFRVFGDGGFFKE 408
Cdd:PLN03081 240 ----ARAGQQLHC--CVLKTGVVGdtfvscALIDMYSKCGDIEDARCVFDGMpeKTTV-----AWNSMLAGYALHGYSEE 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 409 VVELFQDMLHSEVEPDIDTCENVMVACGRGGLHEDARE-------------------VLDYITTEGMVPTAK-------- 461
Cdd:PLN03081 309 ALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQahaglirtgfpldivantaLVDLYSKWGRMEDARnvfdrmpr 388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 462 ----AYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYNALANAFAKGGLFQEAEAIFSRMTNNAAIQKDKDSFDAL 537
Cdd:PLN03081 389 knliSWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 538 IEAYCQGAQLDDavkAYMEMRKSRFNPDERSLEGVLNAYCIAGVIDESKEQFEELQSMvTVPSIIAYCMMLSLYARNDRW 617
Cdd:PLN03081 469 IELLGREGLLDE---AYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM-GPEKLNNYVVLLNLYNSSGRQ 544
|
490
....*....|.
gi 1002254315 618 TDAYDLLEEMK 628
Cdd:PLN03081 545 AEAAKVVETLK 555
|
|
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
170-504 |
3.01e-14 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 77.20 E-value: 3.01e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 170 ESRTALSYTSLIAAYARNALHEEARELLDQMKASGVAPTAATYNTVLAACA------------------RATDPPVPFDM 231
Cdd:PLN03077 350 ETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACAclgdldvgvklhelaerkGLISYVVVANA 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 232 LLGLFAEMRH-DPSPSV-----RPDLTTYNTLLAAAAVRALSDQSEMLLRTMLeAGVLPDTASYRHIVDAFAGAGNLSRV 305
Cdd:PLN03077 430 LIEMYSKCKCiDKALEVfhnipEKDVISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACARIGALMCG 508
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 306 AELFAEMSATGhtpdpsaylglmeahtlvgataeavavlrqMQADGCPPTAatyrvLLDLYGRQGRFDGVRELFREMRTt 385
Cdd:PLN03077 509 KEIHAHVLRTG------------------------------IGFDGFLPNA-----LLDLYVRCGRMNYAWNQFNSHEK- 552
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 386 vppDTATYNVLFRVFGDGGFFKEVVELFQDMLHSEVEPDIDTCENVMVACGRGGLHEDAREVLDYITTE-GMVPTAKAYT 464
Cdd:PLN03077 553 ---DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKySITPNLKHYA 629
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 1002254315 465 GLVEALGHAAMYEEAYvafNMMTEIGSLPTIETYNALANA 504
Cdd:PLN03077 630 CVVDLLGRAGKLTEAY---NFINKMPITPDPAVWGALLNA 666
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
340-629 |
1.89e-13 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 74.53 E-value: 1.89e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 340 AVAVLRQMQADGCPPTAATYRVLLDLYGRQGRFDGVRELFREMRTT-VPPDTATYNVLFRVFGDGGFFKEVVELFQDMLH 418
Cdd:PLN03218 456 ALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAgVEANVHTFGALIDGCARAGQVAKAFGAYGIMRS 535
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 419 SEVEPDIDTCENVMVACGRGGLHEDAREVLDYITTEG--MVPTAKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIE 496
Cdd:PLN03218 536 KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAEThpIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPE 615
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 497 TYNALANAFAKGGLFQEAEAIFSRMTNNAaIQKDKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLEGVLNAY 576
Cdd:PLN03218 616 VYTIAVNSCSQKGDWDFALSIYDDMKKKG-VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGAC 694
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1002254315 577 CIAGVIDESKEQFEELQSMVTVPSIIAYCMMLSLYARNDRWTDAYDLLEEMKT 629
Cdd:PLN03218 695 SNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR 747
|
|
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
169-642 |
7.01e-13 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 72.57 E-value: 7.01e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 169 SESRTALSYTSLIAAYARNALhEEARELLDQMKASGVAPTAATYNTVL-------------AACARATDPPVPFDMLLG- 234
Cdd:PLN03077 47 SSSSTHDSNSQLRALCSHGQL-EQALKLLESMQELRVPVDEDAYVALFrlcewkraveegsRVCSRALSSHPSLGVRLGn 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 235 -----------------LFAEMrhdpspSVRpDLTTYNTLLAAAAVRALSDQSEMLLRTMLEAGVLPDTASYRHIVDAFA 297
Cdd:PLN03077 126 amlsmfvrfgelvhawyVFGKM------PER-DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCG 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 298 GAGNLSRVAELfaemsatghtpdpsaylglmEAHTLVGATAEAVAVLRqmqadgcpptaatyrVLLDLYGRQGRFDGVRE 377
Cdd:PLN03077 199 GIPDLARGREV--------------------HAHVVRFGFELDVDVVN---------------ALITMYVKCGDVVSARL 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 378 LFREMRTTvppDTATYNVLFRVFGDGGFFKEVVELFQDMLHSEVEPDIDTCENVMVACGRGGLHEDAREVLDYITTEGMV 457
Cdd:PLN03077 244 VFDRMPRR---DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFA 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 458 ptakaytglvealghaamyeeAYVAFnmmteigslptietYNALANAFAKGGLFQEAEAIFSRMTnnaaiQKDKDSFDAL 537
Cdd:PLN03077 321 ---------------------VDVSV--------------CNSLIQMYLSLGSWGEAEKVFSRME-----TKDAVSWTAM 360
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 538 IEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCIAGVIDESKEQFEELQSMVTVPSIIAYCMMLSLYARNDRW 617
Cdd:PLN03077 361 ISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCI 440
|
490 500
....*....|....*....|....*
gi 1002254315 618 TDAYDLLEEMKTNRASSTHQVIASM 642
Cdd:PLN03077 441 DKALEVFHNIPEKDVISWTSIIAGL 465
|
|
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
163-627 |
4.43e-11 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 66.80 E-value: 4.43e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 163 VFHDLPSesRTALSYTSLIAAYARNALHEEARELLDQMKASGVAPTAATYNTVLAACARATDppvpfdmlLGLFAEMRhd 242
Cdd:PLN03077 244 VFDRMPR--RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGD--------ERLGREMH-- 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 243 pSPSVRP----DLTTYNTLLAAAAVRALSDQSEMLLRTMleagVLPDTASYRHIVDAFAGAGNLSRVAELFAEMSATGHT 318
Cdd:PLN03077 312 -GYVVKTgfavDVSVCNSLIQMYLSLGSWGEAEKVFSRM----ETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVS 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 319 PDPSAYLGLMEAHTLVGATAEAVAVLRQMQADGCPPTAATYRVLLDLYGRQGRFDGVRELFREM-RTTVPPDTATYNVL- 396
Cdd:PLN03077 387 PDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIpEKDVISWTSIIAGLr 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 397 --FRVFgdggffkEVVELFQDMLHSeVEPDIDTCENVMVACGRGGLHEDAREVLDYITTEGMvptakaytglvealghaa 474
Cdd:PLN03077 467 lnNRCF-------EALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGI------------------ 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 475 myeeayvAFNmmteiGSLPtietyNALANAFAKGGLFQEAEAIFSrmtnnaAIQKDKDSFDALIEAYCQGAQLDDAVKAY 554
Cdd:PLN03077 521 -------GFD-----GFLP-----NALLDLYVRCGRMNYAWNQFN------SHEKDVVSWNILLTGYVAHGKGSMAVELF 577
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1002254315 555 MEMRKSRFNPDERSLEGVLNAYCIAGVIDESKEQFEELQSMVTV-PSIIAYCMMLSLYARNDRWTDAYDLLEEM 627
Cdd:PLN03077 578 NRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSItPNLKHYACVVDLLGRAGKLTEAYNFINKM 651
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
176-221 |
4.34e-10 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 55.83 E-value: 4.34e-10
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 1002254315 176 SYTSLIAAYARNALHEEARELLDQMKASGVAPTAATYNTVLAACAR 221
Cdd:pfam13041 5 TYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
|
|
| PPR_long |
pfam17177 |
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ... |
193-362 |
1.82e-09 |
|
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.
Pssm-ID: 407303 [Multi-domain] Cd Length: 212 Bit Score: 58.56 E-value: 1.82e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 193 ARELLDQMKASGVAPTAATYNTVLAACARATDPPV--PFDMLLGLFAEMRHDPSPSVRPDLTTYNTLLAAAAVRALSDQS 270
Cdd:pfam17177 30 ALALYDAAKAEGVRLAQYHYNVLLYLCSKAADATDlkPQLAADRGFEVFEAMKAQGVSPNEATYTAVARLAAAKGDGDLA 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 271 EMLLRTMLEAGVLPDTASYRHIVDAFAGAGNLSRVAELFAEMSATGHTPDPSAYLGLMEAHTLVGATAEAVAVLRQMQAD 350
Cdd:pfam17177 110 FDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHGVELEEPELAALLKVSAKAGRADKVYAYLHRLRDA 189
|
170
....*....|..
gi 1002254315 351 GCPPTAATYRVL 362
Cdd:pfam17177 190 VRQVSESTAGVL 201
|
|
| PLN03081 |
PLN03081 |
pentatricopeptide (PPR) repeat-containing protein; Provisional |
113-504 |
9.30e-09 |
|
pentatricopeptide (PPR) repeat-containing protein; Provisional
Pssm-ID: 215563 [Multi-domain] Cd Length: 697 Bit Score: 59.11 E-value: 9.30e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 113 FSRRGDWQRSLRLFKYM-QRQSWCRPDE--------------------HIHAIVIGVLGRQ--GPALLD---KC--LE-- 162
Cdd:PLN03081 199 LVDAGNYREAFALFREMwEDGSDAEPRTfvvmlrasaglgsaragqqlHCCVLKTGVVGDTfvSCALIDmysKCgdIEda 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 163 --VFHDLPSesRTALSYTSLIAAYARNALHEEARELLDQMKASGVAPTAATYNTVLAACARatdppvpfdmlLGLfaemr 240
Cdd:PLN03081 279 rcVFDGMPE--KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSR-----------LAL----- 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 241 hdpspsvrpdlttyntllaaaavralsdqsemllrtmLEagvlpdtasyrHIVDAFAGagnlsrvaelfaeMSATGHTPD 320
Cdd:PLN03081 341 -------------------------------------LE-----------HAKQAHAG-------------LIRTGFPLD 359
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 321 psaylglmeahtLVGATAeavavlrqmqadgcpptaatyrvLLDLYGRQGRFDGVRELFREMRTTvppDTATYNVLFRVF 400
Cdd:PLN03081 360 ------------IVANTA-----------------------LVDLYSKWGRMEDARNVFDRMPRK---NLISWNALIAGY 401
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 401 GDGGFFKEVVELFQDMLHSEVEPDIDTCENVMVACGRGGLHEDAREVLDYIT-TEGMVPTAKAYTGLVEALGHAAMYEEA 479
Cdd:PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSeNHRIKPRAMHYACMIELLGREGLLDEA 481
|
410 420
....*....|....*....|....*
gi 1002254315 480 YvafNMMTEIGSLPTIETYNALANA 504
Cdd:PLN03081 482 Y---AMIRRAPFKPTVNMWAALLTA 503
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
136-383 |
1.44e-08 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 58.74 E-value: 1.44e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 136 RPDEHIHAIVIGVLGRQGPalLDKCLEVFHDLPSESRTAL----SYTSLIAAYARNALHEEARELLDQMKASGVAPTAAT 211
Cdd:PLN03218 539 KPDRVVFNALISACGQSGA--VDRAFDVLAEMKAETHPIDpdhiTVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV 616
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 212 YNTVLAACARATDppvpFDMLLGLFAEMRHDpspSVRPDLTTYNTLLAAAAVRALSDQSEMLLRTMLEAGVLPDTASYRH 291
Cdd:PLN03218 617 YTIAVNSCSQKGD----WDFALSIYDDMKKK---GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSS 689
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 292 IVDAFAGAGNLSRVAELFAEMSATGHTPDPSAYLGLMEAHTLVGATAEAVAVLRQMQADGCPPTAATYRVLLDLYGRQGR 371
Cdd:PLN03218 690 LMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDD 769
|
250
....*....|..
gi 1002254315 372 FDGVRELFREMR 383
Cdd:PLN03218 770 ADVGLDLLSQAK 781
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
88-293 |
2.04e-08 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 58.35 E-value: 2.04e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 88 GSIARCLETAR--HRLTLQDFAAVY----REFSRRGDWQRSLRLFKYMQRQSwCRPDEHIHAIVIGVLGRQGpaLLDKCL 161
Cdd:PLN03218 593 GQVDRAKEVYQmiHEYNIKGTPEVYtiavNSCSQKGDWDFALSIYDDMKKKG-VKPDEVFFSALVDVAGHAG--DLDKAF 669
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 162 EVFHDLPSESRT--ALSYTSLIAAYARNALHEEARELLDQMKASGVAPTAATYNTVLAACARATDPPVPFDMLlglfAEM 239
Cdd:PLN03218 670 EILQDARKQGIKlgTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVL----SEM 745
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1002254315 240 RhdpSPSVRPDLTTYNTLLAAAAVRALSDQSEMLLRTMLEAGVLPDTASYRHIV 293
Cdd:PLN03218 746 K---RLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT 796
|
|
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
157-388 |
4.80e-08 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 56.78 E-value: 4.80e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 157 LDKCLEVFHDLPSesRTALSYTSLIAAYARNALHEEARELLDQMKASgVAPTAATYNTVLAACAR--------------- 221
Cdd:PLN03077 440 IDKALEVFHNIPE--KDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARigalmcgkeihahvl 516
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 222 ----ATDPPVPfDMLLGLFAEM-RHDPS----PSVRPDLTTYNTLLAAAAVRALSDQSEMLLRTMLEAGVLPDTASYRHI 292
Cdd:PLN03077 517 rtgiGFDGFLP-NALLDLYVRCgRMNYAwnqfNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISL 595
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 293 VDAFAGAGNLSRVAELFAEMSATGH-TPDPSAYLGLMEAHTLVGATAEAVAVLRQMQAD-----------GC-------- 352
Cdd:PLN03077 596 LCACSRSGMVTQGLEYFHSMEEKYSiTPNLKHYACVVDLLGRAGKLTEAYNFINKMPITpdpavwgallnACrihrhvel 675
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1002254315 353 ------------PPTAATYRVLLDLYGRQGRFD---GVRELFREMRTTVPP 388
Cdd:PLN03077 676 gelaaqhifeldPNSVGYYILLCNLYADAGKWDevaRVRKTMRENGLTVDP 726
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
458-700 |
6.09e-08 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 55.12 E-value: 6.09e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 458 PTAKAYTGLVEALGHAA--MYEEAYVAFNMMTEIGSLpTIETYNALANAFAKGGLFQEAEAIFSRmtnnaAIQKDKDSFD 535
Cdd:COG2956 4 PVAAALGWYFKGLNYLLngQPDKAIDLLEEALELDPE-TVEAHLALGNLYRRRGEYDRAIRIHQK-----LLERDPDRAE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 536 ALIE---AYCQGAQLDDAVKAYMEMRKSRFNpDERSLEGVLNAYCIAGVIDESKEQFEELQSMVTVpSIIAYCMMLSLYA 612
Cdd:COG2956 78 ALLElaqDYLKAGLLDRAEELLEKLLELDPD-DAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPE-NAHAYCELAELYL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 613 RNDRWTDAYDLLEE-MKTNRASsthqVIASMIKGE-YDDDSNWQMVEYVLDNSnLEGCDYSLRFFNALLDVLWWFGQKGR 690
Cdd:COG2956 156 EQGDYDEAIEALEKaLKLDPDC----ARALLLLAElYLEQGDYEEAIAALERA-LEQDPDYLPALPRLAELYEKLGDPEE 230
|
250
....*....|
gi 1002254315 691 AARVLDQALK 700
Cdd:COG2956 231 ALELLRKALE 240
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
329-627 |
1.98e-07 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 53.58 E-value: 1.98e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 329 EAHTLVGATAEAVAVLRQM-QADgcPPTAATYRVLLDLYGRQGRFDGVRELFREMRTTVPPDTATYNVLFRVFGDGGFFK 407
Cdd:COG2956 16 LNYLLNGQPDKAIDLLEEAlELD--PETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 408 EVVELFQDMLhsEVEPDidtcenvmvacgrgglHEDAREVLdyittegmvptAKAYtglvEALGhaaMYEEAYVAFNMMT 487
Cdd:COG2956 94 RAEELLEKLL--ELDPD----------------DAEALRLL-----------AEIY----EQEG---DWEKAIEVLERLL 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 488 EIGSlPTIETYNALANAFAKGGLFQEAEAIFSRmtnnaAIQKDKDSFDALI---EAYCQGAQLDDAVKAYMEMRKSrfNP 564
Cdd:COG2956 138 KLGP-ENAHAYCELAELYLEQGDYDEAIEALEK-----ALKLDPDCARALLllaELYLEQGDYEEAIAALERALEQ--DP 209
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1002254315 565 D-ERSLEGVLNAYCIAGVIDESKEQFEELQSmvTVPSIIAYCMMLSLYARNDRWTDAYDLLEEM 627
Cdd:COG2956 210 DyLPALPRLAELYEKLGDPEEALELLRKALE--LDPSDDLLLALADLLERKEGLEAALALLERQ 271
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
354-400 |
4.15e-07 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 47.36 E-value: 4.15e-07
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 1002254315 354 PTAATYRVLLDLYGRQGRFDGVRELFREMRTT-VPPDTATYNVLFRVF 400
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRgVKPNVYTYTILINGL 48
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
422-628 |
5.00e-07 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 53.73 E-value: 5.00e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 422 EPDIDTCENVMVACGRGGLHEDAREVLDYITTEGMVPTAKAYTGLVEALGHA----AMYEeayvAFNMMTEIGSLPTIET 497
Cdd:PLN03218 434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSgkvdAMFE----VFHEMVNAGVEANVHT 509
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 498 YNALANAFAKGGLFQEAEAIFSRMTNNaAIQKDKDSFDALIEAYCQGAQLDDAVKAYMEMRKSR--FNPDERSLEGVLNA 575
Cdd:PLN03218 510 FGALIDGCARAGQVAKAFGAYGIMRSK-NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAEThpIDPDHITVGALMKA 588
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1002254315 576 YCIAGVIDESKEQFEELQSMVTVPSIIAYCMMLSLYARNDRWTDAYDLLEEMK 628
Cdd:PLN03218 589 CANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK 641
|
|
| PLN03081 |
PLN03081 |
pentatricopeptide (PPR) repeat-containing protein; Provisional |
370-627 |
6.92e-06 |
|
pentatricopeptide (PPR) repeat-containing protein; Provisional
Pssm-ID: 215563 [Multi-domain] Cd Length: 697 Bit Score: 49.87 E-value: 6.92e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 370 GRFDGVRELFR--EMRTTVPPDTATYNVLFRV---FGDGGFFKEVvelFQDMLHSEVEPDIDTCENVM---VACgrgGLH 441
Cdd:PLN03081 101 GRHREALELFEilEAGCPFTLPASTYDALVEAciaLKSIRCVKAV---YWHVESSGFEPDQYMMNRVLlmhVKC---GML 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 442 EDAREVLDYITTEGMVPTAKAYTGLVEalghAAMYEEAYVAFNMMTEIGSLPTIETYN---------------------- 499
Cdd:PLN03081 175 IDARRLFDEMPERNLASWGTIIGGLVD----AGNYREAFALFREMWEDGSDAEPRTFVvmlrasaglgsaragqqlhccv 250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 500 -------------ALANAFAKGGLFQEAEAIFSRMTnnaaiQKDKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDE 566
Cdd:PLN03081 251 lktgvvgdtfvscALIDMYSKCGDIEDARCVFDGMP-----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ 325
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1002254315 567 RSLEGVLNAYCIAGVIDESKEQFEELQSMVTVPSIIAYCMMLSLYARNDRWTDAYDLLEEM 627
Cdd:PLN03081 326 FTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM 386
|
|
| SMR |
smart00463 |
Small MutS-related domain; |
714-800 |
1.00e-05 |
|
Small MutS-related domain;
Pssm-ID: 214676 [Multi-domain] Cd Length: 80 Bit Score: 44.21 E-value: 1.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 714 VWSADVHRMSVGGSLVAVSVWLNKLYDRLkgdedLPQLASVVVLRGqmeKSTVTRGLPIAKVVYSFLndtLSSSFHY-PK 792
Cdd:smart00463 1 KWSLDLHGLTVEEALTALDKFLNNARLKG-----LEQKLVIITGKG---KHSLGGKSGVKPALKEHL---RVESFRFaEE 69
|
....*...
gi 1002254315 793 WNKGRIIC 800
Cdd:smart00463 70 GNSGVLVV 77
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
176-209 |
1.85e-05 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 42.06 E-value: 1.85e-05
10 20 30
....*....|....*....|....*....|....
gi 1002254315 176 SYTSLIAAYARNALHEEARELLDQMKASGVAPTA 209
Cdd:TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
|
| PPR_3 |
pfam13812 |
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ... |
177-219 |
2.51e-05 |
|
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.
Pssm-ID: 316342 [Multi-domain] Cd Length: 63 Bit Score: 42.73 E-value: 2.51e-05
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 1002254315 177 YTSLIAAYARNALHEEARELLDQMKASGVAPTAATYNTVLAAC 219
Cdd:pfam13812 18 YTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVI 60
|
|
| PPR |
pfam01535 |
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ... |
176-205 |
2.73e-05 |
|
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.
Pssm-ID: 366695 [Multi-domain] Cd Length: 31 Bit Score: 41.68 E-value: 2.73e-05
10 20 30
....*....|....*....|....*....|
gi 1002254315 176 SYTSLIAAYARNALHEEARELLDQMKASGV 205
Cdd:pfam01535 2 TYNSLISGYCKNGKLEEALELFKEMKEKGI 31
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
533-577 |
1.38e-04 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 40.04 E-value: 1.38e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 1002254315 533 SFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLEGVLNAYC 577
Cdd:pfam13041 5 TYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLC 49
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
392-425 |
1.74e-04 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 39.36 E-value: 1.74e-04
10 20 30
....*....|....*....|....*....|....
gi 1002254315 392 TYNVLFRVFGDGGFFKEVVELFQDMLHSEVEPDI 425
Cdd:TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
388-427 |
3.94e-04 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 38.88 E-value: 3.94e-04
10 20 30 40
....*....|....*....|....*....|....*....|
gi 1002254315 388 PDTATYNVLFRVFGDGGFFKEVVELFQDMLHSEVEPDIDT 427
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYT 40
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
295-634 |
1.21e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 42.76 E-value: 1.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 295 AFAGAGNLSRVAELFAEmsATGHTPD-PSAYLGLMEAHTLVGATAEAVAVLRQ-MQADGCPPTAatyRVLLDL-YGRQGR 371
Cdd:TIGR02917 372 AYLALGDFEKAAEYLAK--ATELDPEnAAARTQLGISKLSQGDPSEAIADLETaAQLDPELGRA---DLLLILsYLRSGQ 446
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 372 FDGVRELFREMRTTVPPDTATYNVLFRVFGDGGFFKEVVELFQDMLhsEVEPDI--DTCENVMVACGRGGLhEDAREVLD 449
Cdd:TIGR02917 447 FDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKAL--SIEPDFfpAAANLARIDIQEGNP-DDAIQRFE 523
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 450 YITTE--GMVPTAKAYTGLVEALGH----AAMYEEAYvafnmmteiGSLPT-IETYNALANAFAKGGLFQEAEAIFSRMT 522
Cdd:TIGR02917 524 KVLTIdpKNLRAILALAGLYLRTGNeeeaVAWLEKAA---------ELNPQeIEPALALAQYYLGKGQLKKALAILNEAA 594
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 523 NNAAiqKDKDSFDALIEAYCQGAQLDDAVKAYMEMRKsrFNPDerSLEGVLNAYCIAGVIDESKEQFEELQSMVTVPS-- 600
Cdd:TIGR02917 595 DAAP--DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA--LQPD--SALALLLLADAYAVMKNYAKAITSLKRALELKPdn 668
|
330 340 350
....*....|....*....|....*....|....
gi 1002254315 601 IIAYCMMLSLYARNDRWTDAYDLLEEMKTNRASS 634
Cdd:TIGR02917 669 TEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKA 702
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
460-626 |
1.61e-03 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 41.15 E-value: 1.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 460 AKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSlPTIETYNALANAFAKGGLFQEAEAIFSRmtnnaAIQKDKDSFDALI- 538
Cdd:COG0457 8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDP-DDAEALYNLGLAYLRLGRYEEALADYEQ-----ALELDPDDAEALNn 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 539 --EAYCQGAQLDDAVKAYmemRKS-RFNP-DERSLEGVLNAYCIAGVIDESKEQFEELQSMVTvPSIIAYCMMLSLYARN 614
Cdd:COG0457 82 lgLALQALGRYEEALEDY---DKAlELDPdDAEALYNLGLALLELGRYDEAIEAYERALELDP-DDADALYNLGIALEKL 157
|
170
....*....|..
gi 1002254315 615 DRWTDAYDLLEE 626
Cdd:COG0457 158 GRYEEALELLEK 169
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
358-383 |
1.70e-03 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 36.66 E-value: 1.70e-03
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
533-566 |
1.77e-03 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 36.66 E-value: 1.77e-03
10 20 30
....*....|....*....|....*....|....
gi 1002254315 533 SFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDE 566
Cdd:TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
|
| PPR_3 |
pfam13812 |
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ... |
308-367 |
1.95e-03 |
|
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.
Pssm-ID: 316342 [Multi-domain] Cd Length: 63 Bit Score: 37.34 E-value: 1.95e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 308 LFAEMSATGHTPDPSAYLGLMEAHTLVGATAEAVAVLRQMQADGCPPTAATYRVLLDLYG 367
Cdd:pfam13812 2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIG 61
|
|
| PPR_3 |
pfam13812 |
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ... |
196-255 |
2.09e-03 |
|
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.
Pssm-ID: 316342 [Multi-domain] Cd Length: 63 Bit Score: 37.34 E-value: 2.09e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 196 LLDQMKASGVAPTAATYNTVLAACARATDppvpFDMLLGLFAEMRHDpspSVRPDLTTYN 255
Cdd:pfam13812 2 ILREMVRDGIQLNVNTYTHLLHAYANVGN----LKLALEIFERMKKK---GIKPTLDTYN 54
|
|
| PPR |
pfam01535 |
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ... |
497-521 |
2.10e-03 |
|
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.
Pssm-ID: 366695 [Multi-domain] Cd Length: 31 Bit Score: 36.29 E-value: 2.10e-03
|
| PPR_1 |
pfam12854 |
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ... |
350-383 |
2.41e-03 |
|
PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.
Pssm-ID: 403914 [Multi-domain] Cd Length: 34 Bit Score: 36.17 E-value: 2.41e-03
10 20 30
....*....|....*....|....*....|....
gi 1002254315 350 DGCPPTAATYRVLLDLYGRQGRFDGVRELFREMR 383
Cdd:pfam12854 1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
599-645 |
2.44e-03 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 36.57 E-value: 2.44e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 1002254315 599 PSIIAYCMMLSLYARNDRWTDAYDLLEEMKTNRASSTHQVIASMIKG 645
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILING 47
|
|
| PPR_long |
pfam17177 |
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ... |
336-454 |
3.23e-03 |
|
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.
Pssm-ID: 407303 [Multi-domain] Cd Length: 212 Bit Score: 40.07 E-value: 3.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 336 ATAEAVAVLRQMQADGCPPTAATYRVLLDLYGRQGRFDGVRELFREMRTT-VPPDTATYNVLFRVFGDGGFFKEVVELFQ 414
Cdd:pfam17177 70 AADRGFEVFEAMKAQGVSPNEATYTAVARLAAAKGDGDLAFDLVKEMEAAgVSPRLRSYSPALHAYCEAGDADKAYEVEE 149
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1002254315 415 DMLHSEVEPDIDTCENVMVACGRGGLHEDAREVLDYITTE 454
Cdd:pfam17177 150 HMLAHGVELEEPELAALLKVSAKAGRADKVYAYLHRLRDA 189
|
|
| PLN03081 |
PLN03081 |
pentatricopeptide (PPR) repeat-containing protein; Provisional |
509-644 |
3.35e-03 |
|
pentatricopeptide (PPR) repeat-containing protein; Provisional
Pssm-ID: 215563 [Multi-domain] Cd Length: 697 Bit Score: 41.01 E-value: 3.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 509 GLFQEAEAIFSRMTNNAAIQKDKDSFDALIEAyCQGAQLDDAVKA-YMEMRKSRFNPDERSLEGVLNAYCIAGVIDESKE 587
Cdd:PLN03081 101 GRHREALELFEILEAGCPFTLPASTYDALVEA-CIALKSIRCVKAvYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARR 179
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1002254315 588 QFEELQSMvtvpSIIAYCMMLSLYARNDRWTDAYDLLEEMKTNRASSTHQVIASMIK 644
Cdd:PLN03081 180 LFDEMPER----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLR 232
|
|
| PPR |
pfam01535 |
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ... |
358-383 |
4.06e-03 |
|
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.
Pssm-ID: 366695 [Multi-domain] Cd Length: 31 Bit Score: 35.52 E-value: 4.06e-03
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
320-395 |
5.15e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 38.06 E-value: 5.15e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1002254315 320 DPSAYLGLMEAHTLVGATAEAVAVLRQ-MQADgcpPTAATYRVLL-DLYGRQGRFDGVRELFREMRTTVPPDTATYNV 395
Cdd:COG4235 50 NADALLDLAEALLAAGDTEEAEELLERaLALD---PDNPEALYLLgLAAFQQGDYAEAIAAWQKLLALLPADAPARLL 124
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
458-507 |
5.75e-03 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 35.42 E-value: 5.75e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 1002254315 458 PTAKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYNALANAFAK 507
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
497-521 |
5.88e-03 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 35.12 E-value: 5.88e-03
|
| PPR_3 |
pfam13812 |
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ... |
412-471 |
7.23e-03 |
|
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.
Pssm-ID: 316342 [Multi-domain] Cd Length: 63 Bit Score: 35.80 E-value: 7.23e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 412 LFQDMLHSEVEPDIDTCENVMVACGRGGLHEDAREVLDYITTEGMVPTAKAYTGLVEALG 471
Cdd:pfam13812 2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIG 61
|
|
| PPR_long |
pfam17177 |
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ... |
479-600 |
7.55e-03 |
|
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.
Pssm-ID: 407303 [Multi-domain] Cd Length: 212 Bit Score: 38.92 E-value: 7.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 479 AYVAFNMMTEIGSLPTIETYNALANAFAKGGLFQEAEAIFSRMTNNAAIQKDKdSFDALIEAYCQGAQLDDAVKAYMEMR 558
Cdd:pfam17177 74 GFEVFEAMKAQGVSPNEATYTAVARLAAAKGDGDLAFDLVKEMEAAGVSPRLR-SYSPALHAYCEAGDADKAYEVEEHML 152
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90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1002254315 559 KSRFNPDERSLEGVLNAYCIAGVIDESKEQFEELQSMVTVPS 600
Cdd:pfam17177 153 AHGVELEEPELAALLKVSAKAGRADKVYAYLHRLRDAVRQVS 194
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
493-637 |
7.81e-03 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 39.09 E-value: 7.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002254315 493 PTIETYNALANAFAKGGLFQEAEAIF-----SRMTNNAAIQKdkdsfdALIEAYCQGAQLDDAVKAYMEMRKSrfNPDER 567
Cdd:COG4700 87 DTVQNRVRLADALLELGRYDEAIELYeealtGIFADDPHILL------GLAQALFELGRYAEALETLEKLIAK--NPDFK 158
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90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1002254315 568 SLEGVLnAYCIA----GVIDESKEQFEEL-QSMVTVPSIIAYCMMLslyARNDRWTDAYDLLEEM-KTNRASSTHQ 637
Cdd:COG4700 159 SSDAHL-LYARAlealGDLEAAEAELEALaRRYSGPEARYRYAKFL---ARQGRTAEAKELLEEIlDEAKHMPKHY 230
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