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Conserved domains on  [gi|1002257275|ref|XP_015632958|]
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ubiquitin carboxyl-terminal hydrolase 12 [Oryza sativa Japonica Group]

Protein Classification

USP7_ICP0_bdg superfamily-containing protein( domain architecture ID 49406)

USP7_ICP0_bdg superfamily-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
USP7_ICP0_bdg super family cl13823
ICP0-binding domain of Ubiquitin-specific protease 7; This domain is one of two C-terminal ...
 71-125 2.48e-06

ICP0-binding domain of Ubiquitin-specific protease 7; This domain is one of two C-terminal domains on the much longer ubiquitin-specific proteases. This particular one is found to interact with the herpesvirus 1 trans-acting transcriptional protein ICP0/VMW110.


The actual alignment was detected with superfamily member pfam12436:

Pssm-ID: 463580 [Multi-domain]  Cd Length: 239  Bit Score: 44.81  E-value: 2.48e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1002257275  71 QHLWWWARRLNKTYRVDRPLTTEEEKLSVSSLR----HGGDHLNFFLEVLHPHSQPLRD 125
Cdd:pfam12436   1 IRLWPMVNRQNKTVRPDQPLPEADPAKTVEEIRdkmaTRDNPLRLFLEVAEELPPFDKN 59
 
Name Accession Description Interval E-value
USP7_ICP0_bdg pfam12436
ICP0-binding domain of Ubiquitin-specific protease 7; This domain is one of two C-terminal ...
 71-125 2.48e-06

ICP0-binding domain of Ubiquitin-specific protease 7; This domain is one of two C-terminal domains on the much longer ubiquitin-specific proteases. This particular one is found to interact with the herpesvirus 1 trans-acting transcriptional protein ICP0/VMW110.


Pssm-ID: 463580 [Multi-domain]  Cd Length: 239  Bit Score: 44.81  E-value: 2.48e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1002257275  71 QHLWWWARRLNKTYRVDRPLTTEEEKLSVSSLR----HGGDHLNFFLEVLHPHSQPLRD 125
Cdd:pfam12436   1 IRLWPMVNRQNKTVRPDQPLPEADPAKTVEEIRdkmaTRDNPLRLFLEVAEELPPFDKN 59
 
Name Accession Description Interval E-value
USP7_ICP0_bdg pfam12436
ICP0-binding domain of Ubiquitin-specific protease 7; This domain is one of two C-terminal ...
 71-125 2.48e-06

ICP0-binding domain of Ubiquitin-specific protease 7; This domain is one of two C-terminal domains on the much longer ubiquitin-specific proteases. This particular one is found to interact with the herpesvirus 1 trans-acting transcriptional protein ICP0/VMW110.


Pssm-ID: 463580 [Multi-domain]  Cd Length: 239  Bit Score: 44.81  E-value: 2.48e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1002257275  71 QHLWWWARRLNKTYRVDRPLTTEEEKLSVSSLR----HGGDHLNFFLEVLHPHSQPLRD 125
Cdd:pfam12436   1 IRLWPMVNRQNKTVRPDQPLPEADPAKTVEEIRdkmaTRDNPLRLFLEVAEELPPFDKN 59
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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