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Conserved domains on  [gi|1002258481|ref|XP_015633576|]
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uncharacterized protein [Oryza sativa Japonica Group]

Protein Classification

C2H2-type zinc finger protein( domain architecture ID 10482057)

Cys2His2 (C2H2)-type zinc finger protein may be involved in transcriptional regulation

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
G-patch pfam01585
G-patch domain; This domain is found in a number of RNA binding proteins, and is also found in ...
 61-102 1.53e-15

G-patch domain; This domain is found in a number of RNA binding proteins, and is also found in proteins that contain RNA binding domains. This suggests that this domain may have an RNA binding function. This domain has seven highly conserved glycines.


:

Pssm-ID: 396249 [Multi-domain]  Cd Length: 45  Bit Score: 69.07  E-value: 1.53e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1002258481  61 SSNVGFRLLQKMGWK-GKGLGKNEQGITEPIKAGIRDAKLGVG 102
Cdd:pfam01585   1 TSNIGFKLLQKMGWKeGQGLGKNEQGIAEPIEAKIKKDRRGLG 43
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
 156-189 5.92e-03

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


:

Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 33.77  E-value: 5.92e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1002258481  156 FFCSLCNKQYKLAHEFESHLSSydHNHRKRFKEM 189
Cdd:smart00451   4 FYCKLCNVTFTDEISVEAHLKG--KKHKKNVKKR 35
 
Name Accession Description Interval E-value
G-patch pfam01585
G-patch domain; This domain is found in a number of RNA binding proteins, and is also found in ...
 61-102 1.53e-15

G-patch domain; This domain is found in a number of RNA binding proteins, and is also found in proteins that contain RNA binding domains. This suggests that this domain may have an RNA binding function. This domain has seven highly conserved glycines.


Pssm-ID: 396249 [Multi-domain]  Cd Length: 45  Bit Score: 69.07  E-value: 1.53e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1002258481  61 SSNVGFRLLQKMGWK-GKGLGKNEQGITEPIKAGIRDAKLGVG 102
Cdd:pfam01585   1 TSNIGFKLLQKMGWKeGQGLGKNEQGIAEPIEAKIKKDRRGLG 43
G_patch smart00443
glycine rich nucleic binding domain; A predicted glycine rich nucleic binding domain found in ...
 59-103 2.20e-15

glycine rich nucleic binding domain; A predicted glycine rich nucleic binding domain found in the splicing factor 45, SON DNA binding protein and D-type Retrovirus- polyproteins.


Pssm-ID: 197727 [Multi-domain]  Cd Length: 47  Bit Score: 68.73  E-value: 2.20e-15
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 1002258481   59 LTSSNVGFRLLQKMGWK-GKGLGKNEQGITEPIKAGIRDAKLGVGK 103
Cdd:smart00443   1 ISTSNIGAKLLRKMGWKeGQGLGKNEQGIVEPISAEIKKDRKGLGA 46
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
 156-189 5.92e-03

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 33.77  E-value: 5.92e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1002258481  156 FFCSLCNKQYKLAHEFESHLSSydHNHRKRFKEM 189
Cdd:smart00451   4 FYCKLCNVTFTDEISVEAHLKG--KKHKKNVKKR 35
 
Name Accession Description Interval E-value
G-patch pfam01585
G-patch domain; This domain is found in a number of RNA binding proteins, and is also found in ...
 61-102 1.53e-15

G-patch domain; This domain is found in a number of RNA binding proteins, and is also found in proteins that contain RNA binding domains. This suggests that this domain may have an RNA binding function. This domain has seven highly conserved glycines.


Pssm-ID: 396249 [Multi-domain]  Cd Length: 45  Bit Score: 69.07  E-value: 1.53e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1002258481  61 SSNVGFRLLQKMGWK-GKGLGKNEQGITEPIKAGIRDAKLGVG 102
Cdd:pfam01585   1 TSNIGFKLLQKMGWKeGQGLGKNEQGIAEPIEAKIKKDRRGLG 43
G_patch smart00443
glycine rich nucleic binding domain; A predicted glycine rich nucleic binding domain found in ...
 59-103 2.20e-15

glycine rich nucleic binding domain; A predicted glycine rich nucleic binding domain found in the splicing factor 45, SON DNA binding protein and D-type Retrovirus- polyproteins.


Pssm-ID: 197727 [Multi-domain]  Cd Length: 47  Bit Score: 68.73  E-value: 2.20e-15
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 1002258481   59 LTSSNVGFRLLQKMGWK-GKGLGKNEQGITEPIKAGIRDAKLGVGK 103
Cdd:smart00443   1 ISTSNIGAKLLRKMGWKeGQGLGKNEQGIVEPISAEIKKDRKGLGA 46
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
 156-189 5.92e-03

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 33.77  E-value: 5.92e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1002258481  156 FFCSLCNKQYKLAHEFESHLSSydHNHRKRFKEM 189
Cdd:smart00451   4 FYCKLCNVTFTDEISVEAHLKG--KKHKKNVKKR 35
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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