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Conserved domains on  [gi|1002258853|ref|XP_015633768|]
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probable disease resistance RPP8-like protein 2 [Oryza sativa Japonica Group]

Protein Classification

NB-LRR family disease resistance protein( domain architecture ID 16059275)

NB-LRR family disease resistance protein guards the plant against pathogens via an indirect interaction with an avirulence protein contained in the plant, triggering a defense response that restricts the pathogen growth; similar to Oryza sativa Japonica Group disease resistance protein RGA4

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NB-ARC super family cl26397
NB-ARC domain;
219-337 1.04e-04

NB-ARC domain;


The actual alignment was detected with superfamily member pfam00931:

Pssm-ID: 395745 [Multi-domain]  Cd Length: 245  Bit Score: 43.14  E-value: 1.04e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002258853 219 GVGKTALAQHALRHVD-VQARFDHVIWASVPHKYRNKDLLAEIWmsgpgatatAATHRCADQ---MSFGALQAEFVRLvs 294
Cdd:pfam00931  28 GVGKTTLAAQIFNDFDeVEGHFDSVAWVVVSKTFTISTLQQTIL---------QNLGLSEDDwdnKEEGELARKIRRA-- 96

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1002258853 295 LSSQRYLLVLDDVCnDESDdddhqrsrkeWEDVLAPFKQGERG 337
Cdd:pfam00931  97 LLTKRFLLVLDDVW-DEED----------WDKIGIPLPDRENG 128
Rx_N pfam18052
Rx N-terminal domain; This entry represents the N-terminal domain found in many plant ...
 25-109 1.16e-04

Rx N-terminal domain; This entry represents the N-terminal domain found in many plant resistance proteins. This domain has been predicted to be a coiled-coil, however the structure shows that it adopts a four helical bundle fold.


:

Pssm-ID: 436239  Cd Length: 93  Bit Score: 40.33  E-value: 1.16e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002258853  25 SFVARKYRRLRDYRKDVAQLVGEVGKIAVAVDTVEEQEqfMSDRRIVGQLSELMDAIHEAEDILDAVDYRDSIWARKHKV 104
Cdd:pfam18052  11 SLLAEEAKLLKGVKDDLEKLKDELESIQAFLEDAERKQ--ITDEQVKLWLKQLRDVAYDAEDVLDEFLYEALRRKSSPKK 88


                  ....*
gi 1002258853 105 RQVIH 109
Cdd:pfam18052  89 LKFRH 93
 
Name Accession Description Interval E-value
NB-ARC pfam00931
NB-ARC domain;
219-337 1.04e-04

NB-ARC domain;


Pssm-ID: 395745 [Multi-domain]  Cd Length: 245  Bit Score: 43.14  E-value: 1.04e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002258853 219 GVGKTALAQHALRHVD-VQARFDHVIWASVPHKYRNKDLLAEIWmsgpgatatAATHRCADQ---MSFGALQAEFVRLvs 294
Cdd:pfam00931  28 GVGKTTLAAQIFNDFDeVEGHFDSVAWVVVSKTFTISTLQQTIL---------QNLGLSEDDwdnKEEGELARKIRRA-- 96

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1002258853 295 LSSQRYLLVLDDVCnDESDdddhqrsrkeWEDVLAPFKQGERG 337
Cdd:pfam00931  97 LLTKRFLLVLDDVW-DEED----------WDKIGIPLPDRENG 128
Rx_N pfam18052
Rx N-terminal domain; This entry represents the N-terminal domain found in many plant ...
 25-109 1.16e-04

Rx N-terminal domain; This entry represents the N-terminal domain found in many plant resistance proteins. This domain has been predicted to be a coiled-coil, however the structure shows that it adopts a four helical bundle fold.


Pssm-ID: 436239  Cd Length: 93  Bit Score: 40.33  E-value: 1.16e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002258853  25 SFVARKYRRLRDYRKDVAQLVGEVGKIAVAVDTVEEQEqfMSDRRIVGQLSELMDAIHEAEDILDAVDYRDSIWARKHKV 104
Cdd:pfam18052  11 SLLAEEAKLLKGVKDDLEKLKDELESIQAFLEDAERKQ--ITDEQVKLWLKQLRDVAYDAEDVLDEFLYEALRRKSSPKK 88


                  ....*
gi 1002258853 105 RQVIH 109
Cdd:pfam18052  89 LKFRH 93
 
Name Accession Description Interval E-value
NB-ARC pfam00931
NB-ARC domain;
219-337 1.04e-04

NB-ARC domain;


Pssm-ID: 395745 [Multi-domain]  Cd Length: 245  Bit Score: 43.14  E-value: 1.04e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002258853 219 GVGKTALAQHALRHVD-VQARFDHVIWASVPHKYRNKDLLAEIWmsgpgatatAATHRCADQ---MSFGALQAEFVRLvs 294
Cdd:pfam00931  28 GVGKTTLAAQIFNDFDeVEGHFDSVAWVVVSKTFTISTLQQTIL---------QNLGLSEDDwdnKEEGELARKIRRA-- 96

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1002258853 295 LSSQRYLLVLDDVCnDESDdddhqrsrkeWEDVLAPFKQGERG 337
Cdd:pfam00931  97 LLTKRFLLVLDDVW-DEED----------WDKIGIPLPDRENG 128
Rx_N pfam18052
Rx N-terminal domain; This entry represents the N-terminal domain found in many plant ...
 25-109 1.16e-04

Rx N-terminal domain; This entry represents the N-terminal domain found in many plant resistance proteins. This domain has been predicted to be a coiled-coil, however the structure shows that it adopts a four helical bundle fold.


Pssm-ID: 436239  Cd Length: 93  Bit Score: 40.33  E-value: 1.16e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002258853  25 SFVARKYRRLRDYRKDVAQLVGEVGKIAVAVDTVEEQEqfMSDRRIVGQLSELMDAIHEAEDILDAVDYRDSIWARKHKV 104
Cdd:pfam18052  11 SLLAEEAKLLKGVKDDLEKLKDELESIQAFLEDAERKQ--ITDEQVKLWLKQLRDVAYDAEDVLDEFLYEALRRKSSPKK 88


                  ....*
gi 1002258853 105 RQVIH 109
Cdd:pfam18052  89 LKFRH 93
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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