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Conserved domains on  [gi|1002263082|ref|XP_015635892|]
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pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Oryza sativa Japonica Group]

Protein Classification

pentatricopeptide repeat-containing protein( domain architecture ID 1000098)

pentatricopeptide repeat (PPR)-containing protein may form anti-parallel alpha helices and bind single-stranded RNA in a sequence-specific and modular manner

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03218 super family cl33664
maturation of RBCL 1; Provisional
 178-417 2.48e-13

maturation of RBCL 1; Provisional


The actual alignment was detected with superfamily member PLN03218:

Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 72.22  E-value: 2.48e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002263082  178 KTYNLLLRGWAKTRAWARLRQLWFDMDSRGVAKDLHSYSIYMDALAKSGKPWKAFKVFKEMKQKGMAIDVVAYNTAIHSV 257
Cdd:PLN03218   473 KLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISAC 552

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002263082  258 GLAQGVDFAIRLYRQMVDAG--CKPNASTFNTIVKLLCKEG---RFKEGYafvQQMHKFGIE--PNVLTYHCFFQYLSRP 330
Cdd:PLN03218   553 GQSGAVDRAFDVLAEMKAEThpIDPDHITVGALMKACANAGqvdRAKEVY---QMIHEYNIKgtPEVYTIAVNSCSQKGD 629

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002263082  331 QE-VLGLFEKMLERGCRPRMDTYVMLIKRFGRWGFLRPVFIVWKAMEKQGLSPDAFAYNSLIDALLQKGMVDLARKYDEE 409
Cdd:PLN03218   630 WDfALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYED 709


                   ....*...
gi 1002263082  410 MLSKGLSP 417
Cdd:PLN03218   710 IKSIKLRP 717
 
Name Accession Description Interval E-value
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 178-417 2.48e-13

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 72.22  E-value: 2.48e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002263082  178 KTYNLLLRGWAKTRAWARLRQLWFDMDSRGVAKDLHSYSIYMDALAKSGKPWKAFKVFKEMKQKGMAIDVVAYNTAIHSV 257
Cdd:PLN03218   473 KLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISAC 552

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002263082  258 GLAQGVDFAIRLYRQMVDAG--CKPNASTFNTIVKLLCKEG---RFKEGYafvQQMHKFGIE--PNVLTYHCFFQYLSRP 330
Cdd:PLN03218   553 GQSGAVDRAFDVLAEMKAEThpIDPDHITVGALMKACANAGqvdRAKEVY---QMIHEYNIKgtPEVYTIAVNSCSQKGD 629

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002263082  331 QE-VLGLFEKMLERGCRPRMDTYVMLIKRFGRWGFLRPVFIVWKAMEKQGLSPDAFAYNSLIDALLQKGMVDLARKYDEE 409
Cdd:PLN03218   630 WDfALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYED 709


                   ....*...
gi 1002263082  410 MLSKGLSP 417
Cdd:PLN03218   710 IKSIKLRP 717
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 280-320 3.54e-09

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 52.37  E-value: 3.54e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1002263082 280 PNASTFNTIVKLLCKEGRFKEGYAFVQQMHKFGIEPNVLTY 320
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTY 41
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 284-317 2.87e-07

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 46.68  E-value: 2.87e-07
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1002263082 284 TFNTIVKLLCKEGRFKEGYAFVQQMHKFGIEPNV 317
Cdd:TIGR00756   2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
 
Name Accession Description Interval E-value
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 178-417 2.48e-13

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 72.22  E-value: 2.48e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002263082  178 KTYNLLLRGWAKTRAWARLRQLWFDMDSRGVAKDLHSYSIYMDALAKSGKPWKAFKVFKEMKQKGMAIDVVAYNTAIHSV 257
Cdd:PLN03218   473 KLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISAC 552

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002263082  258 GLAQGVDFAIRLYRQMVDAG--CKPNASTFNTIVKLLCKEG---RFKEGYafvQQMHKFGIE--PNVLTYHCFFQYLSRP 330
Cdd:PLN03218   553 GQSGAVDRAFDVLAEMKAEThpIDPDHITVGALMKACANAGqvdRAKEVY---QMIHEYNIKgtPEVYTIAVNSCSQKGD 629

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002263082  331 QE-VLGLFEKMLERGCRPRMDTYVMLIKRFGRWGFLRPVFIVWKAMEKQGLSPDAFAYNSLIDALLQKGMVDLARKYDEE 409
Cdd:PLN03218   630 WDfALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYED 709


                   ....*...
gi 1002263082  410 MLSKGLSP 417
Cdd:PLN03218   710 IKSIKLRP 717
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 214-419 3.17e-11

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 65.67  E-value: 3.17e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002263082  214 SYSIYMDALAKSGKPWKAFKVFKEMKQKGMAIDVVAYNTAIHSVGLAQGVDFAIRLYRQMVDAGCKPNASTFNTIVKLLC 293
Cdd:PLN03218   581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAG 660

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002263082  294 KEGRFKEGYAFVQQMHKFGIEPNVLTYHCFFQYLSRP---QEVLGLFEKMLERGCRPRMDTYVMLIKRFGRWGFLRPVFI 370
Cdd:PLN03218   661 HAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAknwKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALE 740

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*....
gi 1002263082  371 VWKAMEKQGLSPDAFAYNSLIDALLQKGMVDLARKYDEEMLSKGLSPKP 419
Cdd:PLN03218   741 VLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNL 789
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 175-417 1.01e-10

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 64.13  E-value: 1.01e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002263082  175 PVTKTYNLLLRGWAKTRAWARLRQLWFDMDSRGVAKDLHSYSIYMDALAKSGKPWKAFKVFKEMKQKGMAIDVVAYNTAI 254
Cdd:PLN03218   435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002263082  255 HSVGLAQGVDFAIRLYRQMVDAGCKPNASTFNTIVKLLCKEGRFKEGYAFVQQM--HKFGIEPNVLTYHCFFQYLSRPQE 332
Cdd:PLN03218   515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMkaETHPIDPDHITVGALMKACANAGQ 594

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002263082  333 V---LGLFEKMLERGCRPRMDTYVMLIK---RFGRWGFLRPVFivwKAMEKQGLSPDAFAYNSLIDALLQKGMVDLARKY 406
Cdd:PLN03218   595 VdraKEVYQMIHEYNIKGTPEVYTIAVNscsQKGDWDFALSIY---DDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEI 671

                          250
                   ....*....|.
gi 1002263082  407 DEEMLSKGLSP 417
Cdd:PLN03218   672 LQDARKQGIKL 682
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 280-320 3.54e-09

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 52.37  E-value: 3.54e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1002263082 280 PNASTFNTIVKLLCKEGRFKEGYAFVQQMHKFGIEPNVLTY 320
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTY 41
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 246-294 7.52e-09

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 51.21  E-value: 7.52e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1002263082 246 DVVAYNTAIHSVgLAQG-VDFAIRLYRQMVDAGCKPNASTFNTIVKLLCK 294
Cdd:pfam13041   2 DVVTYNTLINGY-CKKGkVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 141-397 1.09e-08

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 57.58  E-value: 1.09e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002263082  141 DEASFHALVDALCDHRRVDEAHHLC--FGKDPPPFPPVTKTYNLLLRGWAKTRAWARLRQLWFDMDSRGVAKDLHSYSIY 218
Cdd:PLN03218   541 DRVVFNALISACGQSGAVDRAFDVLaeMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIA 620

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002263082  219 MDALAKSGKPWKAFKVFKEMKQKGMAIDVVAYNTAIHSVGLAQGVDFAIRLYRQMVDAGCKPNASTFNTIVKLLCKEGRF 298
Cdd:PLN03218   621 VNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNW 700

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002263082  299 KEGYAFVQQMHKFGIEPNVLTYH------CFFQYLSRPQEVLglfEKMLERGCRPRMDTYVMLIKRFGRWGFLRPVFIVW 372
Cdd:PLN03218   701 KKALELYEDIKSIKLRPTVSTMNalitalCEGNQLPKALEVL---SEMKRLGLCPNTITYSILLVASERKDDADVGLDLL 777

                          250       260
                   ....*....|....*....|....*
gi 1002263082  373 KAMEKQGLSPDAFAYNSLIDALLQK 397
Cdd:PLN03218   778 SQAKEDGIKPNLVMCRCITGLCLRR 802
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 111-403 1.24e-08

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 57.19  E-value: 1.24e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002263082 111 RSLLNRLAAANLIDdAIRAFDStagsIGLRDEASFHALVDALCDHRRVDEAHHLcF------GKDPPPfppvtKTYNLLL 184
Cdd:PLN03081  163 RVLLMHVKCGMLID-ARRLFDE----MPERNLASWGTIIGGLVDAGNYREAFAL-FremwedGSDAEP-----RTFVVML 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002263082 185 RGWAKTRAWARLRQLWFDMDSRGVAKDLHSYSIYMDALAKSGKPWKAFKVFKEMKQKgmaiDVVAYNTAIHSVGLAQGVD 264
Cdd:PLN03081  232 RASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK----TTVAWNSMLAGYALHGYSE 307

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002263082 265 FAIRLYRQMVDAGCKPNASTFNTI-----------------------------------VKLLCKEGRFKEG-YAFVQQM 308
Cdd:PLN03081  308 EALCLYYEMRDSGVSIDQFTFSIMirifsrlallehakqahaglirtgfpldivantalVDLYSKWGRMEDArNVFDRMP 387

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002263082 309 HKFGIEPNVLTyhCFFQYLSRPQEVLGLFEKMLERGCRPRMDTYVMLIKRFGRWGFLRPVFIVWKAM-EKQGLSPDAFAY 387
Cdd:PLN03081  388 RKNLISWNALI--AGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMsENHRIKPRAMHY 465

                         330
                  ....*....|....*.
gi 1002263082 388 NSLIDALLQKGMVDLA 403
Cdd:PLN03081  466 ACMIELLGREGLLDEA 481
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 210-261 1.80e-08

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 50.44  E-value: 1.80e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1002263082 210 KDLHSYSIYMDALAKSGKPWKAFKVFKEMKQKGMAIDVVAYNTAIHsvGLAQ 261
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILIN--GLCK 50
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 93-417 4.74e-08

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 55.26  E-value: 4.74e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002263082  93 VSHHDPGRADPSFLRPALRSL---LNRLAAANLIDDAIRAFD-STAGSIGLRDEASFHALVDALCDHRRVDEAHHLCFGK 168
Cdd:PLN03081   70 VSESKDARLDDTQIRKSGVSLcsqIEKLVACGRHREALELFEiLEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHV 149

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002263082 169 DPPPFPPVTKTYNLLLRGWAKTRAWARLRQLWFDMDSRgvakDLHSYSIYMDALAKSGKPWKAFKVFKEMKQKGMAID-- 246
Cdd:PLN03081  150 ESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEpr 225

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002263082 247 --VVAYNTA-----------IHSVGLAQGV---DFA----IRLYRQ---MVDAGCK----PNAST--FNTIVKLLCKEGR 297
Cdd:PLN03081  226 tfVVMLRASaglgsaragqqLHCCVLKTGVvgdTFVscalIDMYSKcgdIEDARCVfdgmPEKTTvaWNSMLAGYALHGY 305

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002263082 298 FKEGYAFVQQMHKFGIEPNVLTYHCFFQYLSRpqevLGLFE-------KMLERGCRPRMDTYVMLIKRFGRWGFLRPVFI 370
Cdd:PLN03081  306 SEEALCLYYEMRDSGVSIDQFTFSIMIRIFSR----LALLEhakqahaGLIRTGFPLDIVANTALVDLYSKWGRMEDARN 381

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*..
gi 1002263082 371 VWKAMEKQGLspdaFAYNSLIDALLQKGMVDLARKYDEEMLSKGLSP 417
Cdd:PLN03081  382 VFDRMPRKNL----ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP 424
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 219-357 7.69e-08

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 52.78  E-value: 7.69e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002263082 219 MDALAKSGKPWKAFKVFKEMKQKGMAIDVVAYNTAIH--------SVGLAQ-GVDFAIRLYRQMVDAGCKPNASTFNTIV 289
Cdd:pfam17177  18 LDKCSKHADATGALALYDAAKAEGVRLAQYHYNVLLYlcskaadaTDLKPQlAADRGFEVFEAMKAQGVSPNEATYTAVA 97

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1002263082 290 KLLCKEGRFKEGYAFVQQMHKFGIEPNVLTY----HCFFQyLSRPQEVLGLFEKMLERGCRPRMDTYVMLIK 357
Cdd:pfam17177  98 RLAAAKGDGDLAFDLVKEMEAAGVSPRLRSYspalHAYCE-AGDADKAYEVEEHMLAHGVELEEPELAALLK 168
PLN03077 PLN03077
Protein ECB2; Provisional
 112-384 9.67e-08

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 54.47  E-value: 9.67e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002263082 112 SLLNRLAAANLIDDAIRAFDStagsIGLRDEASFHALVDALCDHRRVDEAHHLcFGKDPPPFPPVTKTYNLLLRGWAKTR 191
Cdd:PLN03077  429 ALIEMYSKCKCIDKALEVFHN----IPEKDVISWTSIIAGLRLNNRCFEALIF-FRQMLLTLKPNSVTLIAALSACARIG 503

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002263082 192 AWARLRQLWFDMDSRGVAKDLHSYSIYMDALAKSGKPWKAFKVFKEMKQkgmaiDVVAYNTAIHS-VGLAQGvDFAIRLY 270
Cdd:PLN03077  504 ALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEK-----DVVSWNILLTGyVAHGKG-SMAVELF 577

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002263082 271 RQMVDAGCKPNASTFntiVKLLC---KEGRFKEGYAFVQQM-HKFGIEPNVLTYHCFFQYLSRP---QEVLGLFEKM--- 340
Cdd:PLN03077  578 NRMVESGVNPDEVTF---ISLLCacsRSGMVTQGLEYFHSMeEKYSITPNLKHYACVVDLLGRAgklTEAYNFINKMpit 654

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1002263082 341 --------LERGCRP---------------RMDT-----YVMLIKRFGRWGFLRPVFIVWKAMEKQGLSPDA 384
Cdd:PLN03077  655 pdpavwgaLLNACRIhrhvelgelaaqhifELDPnsvgyYILLCNLYADAGKWDEVARVRKTMRENGLTVDP 726
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 277-308 1.69e-07

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 46.96  E-value: 1.69e-07
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1002263082 277 GCKPNASTFNTIVKLLCKEGRFKEGYAFVQQM 308
Cdd:pfam12854   2 GLKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 128-345 1.76e-07

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 53.73  E-value: 1.76e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002263082  128 RAFD------STAGSIgLRDEASFHALVDALCDHRRVD---EAHHLCFGKDPPPFPPVtktYNLLLRGWAKTRAWARLRQ 198
Cdd:PLN03218   560 RAFDvlaemkAETHPI-DPDHITVGALMKACANAGQVDrakEVYQMIHEYNIKGTPEV---YTIAVNSCSQKGDWDFALS 635

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002263082  199 LWFDMDSRGVAKDLHSYSIYMDALAKSGKPWKAFKVFKEMKQKGMAIDVVAYNTAIHSVGLAQGVDFAIRLYRQMVDAGC 278
Cdd:PLN03218   636 IYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKL 715

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002263082  279 KPNASTFNTIVKLLC-----------------------------------KEGRFKEGYAFVQQMHKFGIEPNVLTYHCf 323
Cdd:PLN03218   716 RPTVSTMNALITALCegnqlpkalevlsemkrlglcpntitysillvaseRKDDADVGLDLLSQAKEDGIKPNLVMCRC- 794

                          250       260
                   ....*....|....*....|..
gi 1002263082  324 fqylsrpqeVLGLFEKMLERGC 345
Cdd:PLN03218   795 ---------ITGLCLRRFEKAC 807
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 284-317 2.87e-07

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 46.68  E-value: 2.87e-07
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1002263082 284 TFNTIVKLLCKEGRFKEGYAFVQQMHKFGIEPNV 317
Cdd:TIGR00756   2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 233-295 1.19e-06

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 45.43  E-value: 1.19e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1002263082 233 KVFKEMKQKGMAIDVVAYNTAIHSVGLAQGVDFAIRLYRQMVDAGCKPNASTFNTIVKLLCKE 295
Cdd:pfam13812   1 SILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGGR 63
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 382-417 3.00e-06

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 43.89  E-value: 3.00e-06
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1002263082 382 PDAFAYNSLIDALLQKGMVDLARKYDEEMLSKGLSP 417
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKP 36
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 213-247 4.16e-06

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 43.21  E-value: 4.16e-06
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1002263082 213 HSYSIYMDALAKSGKPWKAFKVFKEMKQKGMAIDV 247
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 214-243 4.97e-06

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 42.84  E-value: 4.97e-06
                          10        20        30
                  ....*....|....*....|....*....|
gi 1002263082 214 SYSIYMDALAKSGKPWKAFKVFKEMKQKGM 243
Cdd:pfam01535   2 TYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 379-410 1.39e-04

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 38.87  E-value: 1.39e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1002263082 379 GLSPDAFAYNSLIDALLQKGMVDLARKYDEEM 410
Cdd:pfam12854   2 GLKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
PLN03077 PLN03077
Protein ECB2; Provisional
 142-290 1.52e-04

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 44.07  E-value: 1.52e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002263082 142 EASFH---ALVDALCDHRRVDEAHHLCFGKDPPPFPPVTKTYNLLLRGWAKTRAWARLRQLWFDMDSRGVAKDLHSYSIY 218
Cdd:PLN03077   48 SSSTHdsnSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1002263082 219 MDALAKSGKPWKAFKVFKEMKQKgmaiDVVAYNTAIHSVGLAQGVDFAIRLYRQMVDAGCKPNASTFNTIVK 290
Cdd:PLN03077  128 LSMFVRFGELVHAWYVFGKMPER----DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLR 195
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 175-224 3.10e-04

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 38.50  E-value: 3.10e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1002263082 175 PVTKTYNLLLRGWAKTRAWARLRQLWFDMDSRGVAKDLHSYSIYMDALAK 224
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 201-381 3.24e-04

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 42.94  E-value: 3.24e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002263082 201 FDMDSRgvaKDLHSYSIYMDALAKSGKPWKAFKVFKEMKQKGMAIDVVAYNTAIHSVGLAQGVDFAIRLYRQMV-DAGCK 279
Cdd:PLN03081  383 FDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSeNHRIK 459

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002263082 280 PNASTFNTIVKLLCKEGRFKEGYAFVQQmhkfgiEPNVLTYHCFFQYL--SRPQEVLGL----FEKMLERGCRpRMDTYV 353
Cdd:PLN03081  460 PRAMHYACMIELLGREGLLDEAYAMIRR------APFKPTVNMWAALLtaCRIHKNLELgrlaAEKLYGMGPE-KLNNYV 532

                         170       180
                  ....*....|....*....|....*...
gi 1002263082 354 MLIKRFGRWGFLRPVFIVWKAMEKQGLS 381
Cdd:PLN03081  533 VLLNLYNSSGRQAEAAKVVETLKRKGLS 560
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 202-258 3.82e-04

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 38.49  E-value: 3.82e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1002263082 202 DMDSRGVAKDLHSYSIYMDALAKSGKPWKAFKVFKEMKQKGMAIDVVAYNTAIHSVG 258
Cdd:pfam13812   5 EMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIG 61
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 305-360 4.99e-04

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 38.11  E-value: 4.99e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002263082 305 VQQMHKFGIEPNVLTY----HCFFQYLSRpQEVLGLFEKMLERGCRPRMDTYVMLIKRFG 360
Cdd:pfam13812   3 LREMVRDGIQLNVNTYthllHAYANVGNL-KLALEIFERMKKKGIKPTLDTYNAILGVIG 61
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 385-417 5.81e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 37.05  E-value: 5.81e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1002263082 385 FAYNSLIDALLQKGMVDLARKYDEEMLSKGLSP 417
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 351-394 8.22e-04

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 36.96  E-value: 8.22e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1002263082 351 TYVMLIKRFGRWGFLRPVFIVWKAMEKQGLSPDAFAYNSLIDAL 394
Cdd:pfam13041   5 TYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 268-320 9.64e-04

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 37.34  E-value: 9.64e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1002263082 268 RLYRQMVDAGCKPNASTFNTIVKLLCKEGRFKEGYAFVQQMHKFGIEPNVLTY 320
Cdd:pfam13812   1 SILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTY 53
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 283-313 1.61e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 35.90  E-value: 1.61e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1002263082 283 STFNTIVKLLCKEGRFKEGYAFVQQMHKFGI 313
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 336-393 2.08e-03

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 36.57  E-value: 2.08e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1002263082 336 LFEKMLERGCRPRMDTYVMLIKRFGRWGFLRPVFIVWKAMEKQGLSPDAFAYNSLIDA 393
Cdd:pfam13812   2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGV 59
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 385-415 3.09e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 35.13  E-value: 3.09e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1002263082 385 FAYNSLIDALLQKGMVDLARKYDEEMLSKGL 415
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 206-239 4.36e-03

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 34.63  E-value: 4.36e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1002263082 206 RGVAKDLHSYSIYMDALAKSGKPWKAFKVFKEMK 239
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 248-282 5.99e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 34.35  E-value: 5.99e-03
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1002263082 248 VAYNTAIHsvGLAQG--VDFAIRLYRQMVDAGCKPNA 282
Cdd:TIGR00756   1 VTYNTLID--GLCKAgrVEEALELFKEMKERGIEPDV 35
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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