NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1002263637|ref|XP_015636163|]
View 

uncharacterized protein [Oryza sativa Japonica Group]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
RST pfam12174
RCD1-SRO-TAF4 (RST) plant domain; This domain is found in plant RCD1, SRO and TAF4 proteins, ...
 461-526 2.12e-25

RCD1-SRO-TAF4 (RST) plant domain; This domain is found in plant RCD1, SRO and TAF4 proteins, hence its name of RST. It is required for interaction with multiple plant transcription factors. Radical-Induced Cell Death1 (RCD1) is an important regulator of stress and hormonal and developmental responses in Arabidopsis thaliana, as is its closest homolog, SRO1 - Similar To RCD-One1. TBP-Associated Factor 4 (TAF4) and TAF4-b are components of the transcription initiation factor complex TFIID.


:

Pssm-ID: 432383  Cd Length: 67  Bit Score: 99.87  E-value: 2.12e-25
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1002263637 461 PTSPWISFRVLFAMIQENISSVARELLFHHYEELKENKITREEMVKQMIILVGEKLLLETLKRLHY 526
Cdd:pfam12174   2 PKSPWMPFPMLLSALSKKLPPSDMDLLQKHYEDFKEKKISREEFVRKLRQIVGDQLLKSTIKSLQQ 67
PARP super family cl27334
Poly(ADP-ribose) polymerase catalytic domain; Poly(ADP-ribose) polymerase catalyzes the ...
 211-391 2.66e-06

Poly(ADP-ribose) polymerase catalytic domain; Poly(ADP-ribose) polymerase catalyzes the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region of the protein. Experiments have shown that a carboxyl 40 kDa fragment is still catalytically active.


The actual alignment was detected with superfamily member pfam00644:

Pssm-ID: 395519 [Multi-domain]  Cd Length: 195  Bit Score: 49.25  E-value: 2.66e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002263637 211 SEGFLFAQDLFLSGMGP-FATPNNILHIHRYSpnDITAQCRLQAFEKQMmstkeergdaNVRYGWLGSRKNDIVRILING 289
Cdd:pfam00644   1 SEEYQIIEKYFLSTHDPtHGYPLFILEIFRVQ--RDGEWERFQPKKKLR----------NRRLLWHGSRLTNFLGILSQG 68

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002263637 290 FgnngKPA-EKAGLSA-----GVYLSpEDRAFSSVGLCDVDEKGVQYMLLCRLILGNMEAV------------------- 344
Cdd:pfam00644  69 L----RIApPEAPVTGymfgkGIYFA-DDASKSANYCPPSEAHGNGLMLLSEVALGDMNELkkadyaeklppgkhsvkgl 143

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1002263637 345 ---MPGSQ---DSFPSSDIYDSGVDDCS-NPKCYVMWPSHlstHIRLEYLVSFR 391
Cdd:pfam00644 144 gktAPESFvdlDGVPLGKLVATGYDSSVlLYNEYVVYNVN---QVRPKYLLEVK 194
WWE pfam02825
WWE domain; The WWE domain is named after three of its conserved residues and is predicted to ...
 72-129 7.47e-04

WWE domain; The WWE domain is named after three of its conserved residues and is predicted to mediate specific protein- protein interactions in ubiquitin and ADP ribose conjugation systems.


:

Pssm-ID: 460715 [Multi-domain]  Cd Length: 66  Bit Score: 38.82  E-value: 7.47e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1002263637  72 FYK--QGSWHNFPEQIMkSLIEE-FRSNKSSV--VAVMDDEPVLVDFLSMTLVNLKSRKQRSV 129
Cdd:pfam02825   3 EWEddNGGWHPYDPEVS-SLIEEaYQKGKPSVdlSITTAGFPYTIDFKSMTQTNKDTGTTRPV 64
 
Name Accession Description Interval E-value
RST pfam12174
RCD1-SRO-TAF4 (RST) plant domain; This domain is found in plant RCD1, SRO and TAF4 proteins, ...
 461-526 2.12e-25

RCD1-SRO-TAF4 (RST) plant domain; This domain is found in plant RCD1, SRO and TAF4 proteins, hence its name of RST. It is required for interaction with multiple plant transcription factors. Radical-Induced Cell Death1 (RCD1) is an important regulator of stress and hormonal and developmental responses in Arabidopsis thaliana, as is its closest homolog, SRO1 - Similar To RCD-One1. TBP-Associated Factor 4 (TAF4) and TAF4-b are components of the transcription initiation factor complex TFIID.


Pssm-ID: 432383  Cd Length: 67  Bit Score: 99.87  E-value: 2.12e-25
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1002263637 461 PTSPWISFRVLFAMIQENISSVARELLFHHYEELKENKITREEMVKQMIILVGEKLLLETLKRLHY 526
Cdd:pfam12174   2 PKSPWMPFPMLLSALSKKLPPSDMDLLQKHYEDFKEKKISREEFVRKLRQIVGDQLLKSTIKSLQQ 67
PARP pfam00644
Poly(ADP-ribose) polymerase catalytic domain; Poly(ADP-ribose) polymerase catalyzes the ...
 211-391 2.66e-06

Poly(ADP-ribose) polymerase catalytic domain; Poly(ADP-ribose) polymerase catalyzes the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region of the protein. Experiments have shown that a carboxyl 40 kDa fragment is still catalytically active.


Pssm-ID: 395519 [Multi-domain]  Cd Length: 195  Bit Score: 49.25  E-value: 2.66e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002263637 211 SEGFLFAQDLFLSGMGP-FATPNNILHIHRYSpnDITAQCRLQAFEKQMmstkeergdaNVRYGWLGSRKNDIVRILING 289
Cdd:pfam00644   1 SEEYQIIEKYFLSTHDPtHGYPLFILEIFRVQ--RDGEWERFQPKKKLR----------NRRLLWHGSRLTNFLGILSQG 68

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002263637 290 FgnngKPA-EKAGLSA-----GVYLSpEDRAFSSVGLCDVDEKGVQYMLLCRLILGNMEAV------------------- 344
Cdd:pfam00644  69 L----RIApPEAPVTGymfgkGIYFA-DDASKSANYCPPSEAHGNGLMLLSEVALGDMNELkkadyaeklppgkhsvkgl 143

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1002263637 345 ---MPGSQ---DSFPSSDIYDSGVDDCS-NPKCYVMWPSHlstHIRLEYLVSFR 391
Cdd:pfam00644 144 gktAPESFvdlDGVPLGKLVATGYDSSVlLYNEYVVYNVN---QVRPKYLLEVK 194
WWE pfam02825
WWE domain; The WWE domain is named after three of its conserved residues and is predicted to ...
 72-129 7.47e-04

WWE domain; The WWE domain is named after three of its conserved residues and is predicted to mediate specific protein- protein interactions in ubiquitin and ADP ribose conjugation systems.


Pssm-ID: 460715 [Multi-domain]  Cd Length: 66  Bit Score: 38.82  E-value: 7.47e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1002263637  72 FYK--QGSWHNFPEQIMkSLIEE-FRSNKSSV--VAVMDDEPVLVDFLSMTLVNLKSRKQRSV 129
Cdd:pfam02825   3 EWEddNGGWHPYDPEVS-SLIEEaYQKGKPSVdlSITTAGFPYTIDFKSMTQTNKDTGTTRPV 64
 
Name Accession Description Interval E-value
RST pfam12174
RCD1-SRO-TAF4 (RST) plant domain; This domain is found in plant RCD1, SRO and TAF4 proteins, ...
 461-526 2.12e-25

RCD1-SRO-TAF4 (RST) plant domain; This domain is found in plant RCD1, SRO and TAF4 proteins, hence its name of RST. It is required for interaction with multiple plant transcription factors. Radical-Induced Cell Death1 (RCD1) is an important regulator of stress and hormonal and developmental responses in Arabidopsis thaliana, as is its closest homolog, SRO1 - Similar To RCD-One1. TBP-Associated Factor 4 (TAF4) and TAF4-b are components of the transcription initiation factor complex TFIID.


Pssm-ID: 432383  Cd Length: 67  Bit Score: 99.87  E-value: 2.12e-25
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1002263637 461 PTSPWISFRVLFAMIQENISSVARELLFHHYEELKENKITREEMVKQMIILVGEKLLLETLKRLHY 526
Cdd:pfam12174   2 PKSPWMPFPMLLSALSKKLPPSDMDLLQKHYEDFKEKKISREEFVRKLRQIVGDQLLKSTIKSLQQ 67
PARP pfam00644
Poly(ADP-ribose) polymerase catalytic domain; Poly(ADP-ribose) polymerase catalyzes the ...
 211-391 2.66e-06

Poly(ADP-ribose) polymerase catalytic domain; Poly(ADP-ribose) polymerase catalyzes the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region of the protein. Experiments have shown that a carboxyl 40 kDa fragment is still catalytically active.


Pssm-ID: 395519 [Multi-domain]  Cd Length: 195  Bit Score: 49.25  E-value: 2.66e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002263637 211 SEGFLFAQDLFLSGMGP-FATPNNILHIHRYSpnDITAQCRLQAFEKQMmstkeergdaNVRYGWLGSRKNDIVRILING 289
Cdd:pfam00644   1 SEEYQIIEKYFLSTHDPtHGYPLFILEIFRVQ--RDGEWERFQPKKKLR----------NRRLLWHGSRLTNFLGILSQG 68

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002263637 290 FgnngKPA-EKAGLSA-----GVYLSpEDRAFSSVGLCDVDEKGVQYMLLCRLILGNMEAV------------------- 344
Cdd:pfam00644  69 L----RIApPEAPVTGymfgkGIYFA-DDASKSANYCPPSEAHGNGLMLLSEVALGDMNELkkadyaeklppgkhsvkgl 143

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1002263637 345 ---MPGSQ---DSFPSSDIYDSGVDDCS-NPKCYVMWPSHlstHIRLEYLVSFR 391
Cdd:pfam00644 144 gktAPESFvdlDGVPLGKLVATGYDSSVlLYNEYVVYNVN---QVRPKYLLEVK 194
WWE pfam02825
WWE domain; The WWE domain is named after three of its conserved residues and is predicted to ...
 72-129 7.47e-04

WWE domain; The WWE domain is named after three of its conserved residues and is predicted to mediate specific protein- protein interactions in ubiquitin and ADP ribose conjugation systems.


Pssm-ID: 460715 [Multi-domain]  Cd Length: 66  Bit Score: 38.82  E-value: 7.47e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1002263637  72 FYK--QGSWHNFPEQIMkSLIEE-FRSNKSSV--VAVMDDEPVLVDFLSMTLVNLKSRKQRSV 129
Cdd:pfam02825   3 EWEddNGGWHPYDPEVS-SLIEEaYQKGKPSVdlSITTAGFPYTIDFKSMTQTNKDTGTTRPV 64
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH