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Conserved domains on  [gi|1002264378|ref|XP_015636525|]
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hsp70-Hsp90 organizing protein [Oryza sativa Japonica Group]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 252-516 8.07e-19

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 86.71  E-value: 8.07e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 252 EAGNAAYKKDFETAIQHYTKAMELDDEDVSYLTNRAAVYLEMGKYDECINDCDKAVERGRELHadfkiisRALTRkgtaL 331
Cdd:COG2956    14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRA-------EALLE----L 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 332 AKIAKCFKDYDVAIETYQKAL-TEHRNPDTLKKL-------NDAEIAKKELEQQEYYDPKIADEEREKGNEFFKQQKYPE 403
Cdd:COG2956    83 AQDYLKAGLLDRAEELLEKLLeLDPDDAEALRLLaeiyeqeGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 404 AVKHYSEALRRNPKDPRVYSNRAACYTKLGAMPEGLKDAEKCIELDPTFSKGYTRKGAIQFFMKEYDKALETYQAGLKHD 483
Cdd:COG2956   163 AIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELD 242

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1002264378 484 PNNQELLDGVRRCVQRINKASRGELSQEELQER 516
Cdd:COG2956   243 PSDDLLLALADLLERKEGLEAALALLERQLRRH 275
Spy super family cl27809
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 9-115 1.66e-18

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG3914:

Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 89.28  E-value: 1.66e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378   9 GNAAFSAGRFEEAAAHFTDAIALAPDNHVLYSNRSAAYASLHRYPEALADAERTVALRPDWAKGCSRLGAARLGLGDAAG 88
Cdd:COG3914   119 GNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEE 198

                          90       100
                  ....*....|....*....|....*..
gi 1002264378  89 AVAAYEKGLALEPSNGALKDGLAHARQ 115
Cdd:COG3914   199 AIAAYRRALELDPDNADAHSNLLFALR 225
STI1 pfam17830
STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 ...
 134-188 7.33e-18

STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 protein.


:

Pssm-ID: 436075  Cd Length: 55  Bit Score: 77.60  E-value: 7.33e-18
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1002264378 134 GPELWSRMAADPTTRPYLDQPDFMRMLRDVQRNPSSLNNYLSDPRMVQVLSLMLN 188
Cdd:pfam17830   1 DPELLAKLAANPETRALLSDPEFVAKLQQIQKNPSSLQQYMQDPRVMTKLGVLMG 55
STI1 pfam17830
STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 ...
 514-567 9.16e-15

STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 protein.


:

Pssm-ID: 436075  Cd Length: 55  Bit Score: 68.74  E-value: 9.16e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1002264378 514 QERQNKAMQDPEIQNILKDPIMQQVLTDFQENPKAAQAHLKNPGVMQKIQKLVS 567
Cdd:pfam17830   2 PELLAKLAANPETRALLSDPEFVAKLQQIQKNPSSLQQYMQDPRVMTKLGVLMG 55
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 252-516 8.07e-19

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 86.71  E-value: 8.07e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 252 EAGNAAYKKDFETAIQHYTKAMELDDEDVSYLTNRAAVYLEMGKYDECINDCDKAVERGRELHadfkiisRALTRkgtaL 331
Cdd:COG2956    14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRA-------EALLE----L 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 332 AKIAKCFKDYDVAIETYQKAL-TEHRNPDTLKKL-------NDAEIAKKELEQQEYYDPKIADEEREKGNEFFKQQKYPE 403
Cdd:COG2956    83 AQDYLKAGLLDRAEELLEKLLeLDPDDAEALRLLaeiyeqeGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 404 AVKHYSEALRRNPKDPRVYSNRAACYTKLGAMPEGLKDAEKCIELDPTFSKGYTRKGAIQFFMKEYDKALETYQAGLKHD 483
Cdd:COG2956   163 AIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELD 242

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1002264378 484 PNNQELLDGVRRCVQRINKASRGELSQEELQER 516
Cdd:COG2956   243 PSDDLLLALADLLERKEGLEAALALLERQLRRH 275
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 9-115 1.66e-18

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 89.28  E-value: 1.66e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378   9 GNAAFSAGRFEEAAAHFTDAIALAPDNHVLYSNRSAAYASLHRYPEALADAERTVALRPDWAKGCSRLGAARLGLGDAAG 88
Cdd:COG3914   119 GNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEE 198

                          90       100
                  ....*....|....*....|....*..
gi 1002264378  89 AVAAYEKGLALEPSNGALKDGLAHARQ 115
Cdd:COG3914   199 AIAAYRRALELDPDNADAHSNLLFALR 225
STI1 pfam17830
STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 ...
 134-188 7.33e-18

STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 protein.


Pssm-ID: 436075  Cd Length: 55  Bit Score: 77.60  E-value: 7.33e-18
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1002264378 134 GPELWSRMAADPTTRPYLDQPDFMRMLRDVQRNPSSLNNYLSDPRMVQVLSLMLN 188
Cdd:pfam17830   1 DPELLAKLAANPETRALLSDPEFVAKLQQIQKNPSSLQQYMQDPRVMTKLGVLMG 55
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 1-108 4.57e-15

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 76.75  E-value: 4.57e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378   1 MADEAKAKGNAAFSAGRFEEAAAHFTDAIALAPDNHVLYSNRSAAYASLHRYPEALADAERTVALRPDWAKGCSRLGAAR 80
Cdd:PLN03088    1 MAKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTAC 80

                          90       100
                  ....*....|....*....|....*...
gi 1002264378  81 LGLGDAAGAVAAYEKGLALEPSNGALKD 108
Cdd:PLN03088   81 MKLEEYQTAKAALEKGASLAPGDSRFTK 108
STI1 pfam17830
STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 ...
 514-567 9.16e-15

STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 protein.


Pssm-ID: 436075  Cd Length: 55  Bit Score: 68.74  E-value: 9.16e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1002264378 514 QERQNKAMQDPEIQNILKDPIMQQVLTDFQENPKAAQAHLKNPGVMQKIQKLVS 567
Cdd:pfam17830   2 PELLAKLAANPETRALLSDPEFVAKLQQIQKNPSSLQQYMQDPRVMTKLGVLMG 55
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 385-525 4.60e-14

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 73.67  E-value: 4.60e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 385 ADEEREKGNEFFKQQKYPEAVKHYSEALRRNPKDPRVYSNRAACYTKLGAMPEGLKDAEKCIELDPTFSKGYTRKGAIQF 464
Cdd:PLN03088    2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACM 81

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1002264378 465 FMKEYDKALETYQAGLKHDPNNQELLDGVRRCVQRInkasrgelsQEELQERQNKAMQDPE 525
Cdd:PLN03088   82 KLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI---------AEEEKDLVQPVPSDLP 133
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 251-489 2.03e-13

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 73.09  E-value: 2.03e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 251 KEAGNAAYK-KDFETAIQHYTKAMELdDEDVSYLTNRAAVYLEMGKYDECINDCDKAVergrELHADFkiiSRALTRKGT 329
Cdd:TIGR00990 131 KEKGNKAYRnKDFNKAIKLYSKAIEC-KPDPVYYSNRAACHNALGDWEKVVEDTTAAL----ELDPDY---SKALNRRAN 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 330 A---LAKIAKCFKDYDV--------------AIETYQKALTEHRNPDTLK----KL-------NDAEIAKKELEQQEYYD 381
Cdd:TIGR00990 203 AydgLGKYADALLDLTAsciidgfrneqsaqAVERLLKKFAESKAKEILEtkpeNLpsvtfvgNYLQSFRPKPRPAGLED 282

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 382 PKIADEEREKG--NEFFKQQK------YPEAVKHYSEALRRN---PKDPRVYSNRAACYTKLGAMPEGLKDAEKCIELDP 450
Cdd:TIGR00990 283 SNELDEETGNGqlQLGLKSPEskadesYEEAARAFEKALDLGklgEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP 362

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 1002264378 451 TFSKGYTRKGAIQFFMKEYDKALETYQAGLKHDPNNQEL 489
Cdd:TIGR00990 363 RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDI 401
TPR_11 pfam13414
TPR repeat;
392-433 1.36e-07

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 47.85  E-value: 1.36e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1002264378 392 GNEFFKQQKYPEAVKHYSEALRRNPKDPRVYSNRAACYTKLG 433
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 6-90 4.89e-07

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 52.68  E-value: 4.89e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378   6 KAKGNAAFSAGRFEEAAAHFTDAIALAPDNhVLYSNRSAAYASLHRYPEALADAERTVALRPDWAKGCSRLGAARLGLGD 85
Cdd:TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIECKPDP-VYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK 209


                  ....*
gi 1002264378  86 AAGAV 90
Cdd:TIGR00990 210 YADAL 214
STI1 smart00727
Heat shock chaperonin-binding motif;
523-562 5.51e-07

Heat shock chaperonin-binding motif;


Pssm-ID: 128966  Cd Length: 41  Bit Score: 46.11  E-value: 5.51e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 1002264378  523 DPEIQNILKDPIMQQVLTDFQENPKAAQAHLK-NPGVMQKI 562
Cdd:smart00727   1 DPEMALRLQNPQVQSLLQDMQQNPDMLAQMLQeNPQLLQLI 41
BTAD smart01043
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. ...
 4-120 2.52e-05

Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.


Pssm-ID: 198111 [Multi-domain]  Cd Length: 145  Bit Score: 44.60  E-value: 2.52e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378    4 EAKAKGNAAFSAGRFEEAAAHFTDAIALApdnhvlysnRSAAYASLHRYPEALADAERtvaLRPDWAKGCSRLGAARLGL 83
Cdd:smart01043   7 ERLVAAARAALAADPEAALALLEAALALY---------RGPLLADVPDEDWAEAERER---LRELRLEALEALAEALLAL 74

                           90       100       110
                   ....*....|....*....|....*....|....*....
gi 1002264378   84 GDAAGAVAAYEKGLALEPSNGALKDGL--AHARQARRPA 120
Cdd:smart01043  75 GRHEEALALLERLLALDPLRERLHRLLmrALYRAGRRAE 113
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 390-495 3.26e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 43.00  E-value: 3.26e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 390 EKGNEFFKQQKYPEAVKHYSEALRRNPKDPRVYSNRAACYTKLGAMPEGLKDAEKCIELDPtfSKGYTR----------K 459
Cdd:cd24142     5 EKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDP--DGGYEKylylgqlsggE 82

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1002264378 460 GAIQFFMKEYDKALETYQAGLKHDPNNQELLDGVRR 495
Cdd:cd24142    83 EALQYYEKGIEILEEELQALQAASAEAEEEAEELKR 118
MamA NF040959
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise ...
 374-485 4.04e-04

magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise magnetic mineral crystals in magnetotactic bacteria (MTB). Magnetosomes are important for MTB to search for preferred microaerophilic environment. Proteins of this family typically contain five tetra-trico-peptide repeat (TPR) motifs. Based on structural analyses, MamA forms a large homooligomer through self-recognition to regulate protein-protein interaction in magnetosomes.


Pssm-ID: 468889 [Multi-domain]  Cd Length: 204  Bit Score: 41.98  E-value: 4.04e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 374 LEQQEYYDPKIADEEREKGNEFFKQQKYPEAVKHYSEALRRNPKDPRVYSNRAACYTKLGAMPEGLKDAEKCIELDPTFS 453
Cdd:NF040959   60 LEQVARIDPDDVEALYRLGVAYLKTGQYDRAIKVLEKVLSLAPDHVKAAYRKGVALLKIKDYEKAVEDLEEALEEKPDNF 139

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1002264378 454 KGYTRKGAIQFFMKEYDKALETYQAGLKHDPN 485
Cdd:NF040959  140 NLNYRLGLALDGLGQYDKAIEAFQKALELDPN 171
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 453-486 9.69e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 36.66  E-value: 9.69e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1002264378  453 SKGYTRKGAIQFFMKEYDKALETYQAGLKHDPNN 486
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
BTAD pfam03704
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. ...
 4-101 2.15e-03

Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.


Pssm-ID: 397662 [Multi-domain]  Cd Length: 146  Bit Score: 38.80  E-value: 2.15e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378   4 EAKAKGNAAFSAGRFEEAAAHFTDAIALApdnhvlysnRSAAYASLHRYPEALADAERTVALRPDwakGCSRLGAARLGL 83
Cdd:pfam03704   8 RLVRAGRAALAAGDPAEAARLLRAALALW---------RGPALADLPAGPWLEAERARLEELRLE---ALEARAEADLRL 75

                          90
                  ....*....|....*...
gi 1002264378  84 GDAAGAVAAYEKGLALEP 101
Cdd:pfam03704  76 GRHEEALPELEALVAAHP 93
MamA NF040959
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise ...
 8-100 7.85e-03

magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise magnetic mineral crystals in magnetotactic bacteria (MTB). Magnetosomes are important for MTB to search for preferred microaerophilic environment. Proteins of this family typically contain five tetra-trico-peptide repeat (TPR) motifs. Based on structural analyses, MamA forms a large homooligomer through self-recognition to regulate protein-protein interaction in magnetosomes.


Pssm-ID: 468889 [Multi-domain]  Cd Length: 204  Bit Score: 38.13  E-value: 7.85e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378   8 KGNAAFSAGRFEEAAAHFTDAIALAPDNHVLYSNRSAAYASLHRYPEALADAERTVALRPDWAKGCSRLGAARLGLGDAA 87
Cdd:NF040959  111 KGVALLKIKDYEKAVEDLEEALEEKPDNFNLNYRLGLALDGLGQYDKAIEAFQKALELDPNEIKYHQAIGFMYVQKGDHE 190

                          90
                  ....*....|...
gi 1002264378  88 GAVAAYEKGLALE 100
Cdd:NF040959  191 TAAEHFKKAMELE 203
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 252-516 8.07e-19

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 86.71  E-value: 8.07e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 252 EAGNAAYKKDFETAIQHYTKAMELDDEDVSYLTNRAAVYLEMGKYDECINDCDKAVERGRELHadfkiisRALTRkgtaL 331
Cdd:COG2956    14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRA-------EALLE----L 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 332 AKIAKCFKDYDVAIETYQKAL-TEHRNPDTLKKL-------NDAEIAKKELEQQEYYDPKIADEEREKGNEFFKQQKYPE 403
Cdd:COG2956    83 AQDYLKAGLLDRAEELLEKLLeLDPDDAEALRLLaeiyeqeGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 404 AVKHYSEALRRNPKDPRVYSNRAACYTKLGAMPEGLKDAEKCIELDPTFSKGYTRKGAIQFFMKEYDKALETYQAGLKHD 483
Cdd:COG2956   163 AIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELD 242

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1002264378 484 PNNQELLDGVRRCVQRINKASRGELSQEELQER 516
Cdd:COG2956   243 PSDDLLLALADLLERKEGLEAALALLERQLRRH 275
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 9-115 1.66e-18

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 89.28  E-value: 1.66e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378   9 GNAAFSAGRFEEAAAHFTDAIALAPDNHVLYSNRSAAYASLHRYPEALADAERTVALRPDWAKGCSRLGAARLGLGDAAG 88
Cdd:COG3914   119 GNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEE 198

                          90       100
                  ....*....|....*....|....*..
gi 1002264378  89 AVAAYEKGLALEPSNGALKDGLAHARQ 115
Cdd:COG3914   199 AIAAYRRALELDPDNADAHSNLLFALR 225
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
274-551 1.71e-18

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 85.06  E-value: 1.71e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 274 ELDDEDVSYLTNRAAVYLEMGKYDECINDCDKAVERGRELHadfkiisRALTRKGTALAKIakcfKDYDVAIETYQKALt 353
Cdd:COG0457     2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDA-------EALYNLGLAYLRL----GRYEEALADYEQAL- 69

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 354 eHRNPDTLKKLNDaeiakkeleqqeyydpkiadeereKGNEFFKQQKYPEAVKHYSEALRRNPKDPRVYSNRAACYTKLG 433
Cdd:COG0457    70 -ELDPDDAEALNN------------------------LGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELG 124

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 434 AMPEGLKDAEKCIELDPTFSKGYTRKGAIQFFMKEYDKALETYQAGLKHDPNNQELLDGVRRCVQRINKASRGELSQEEL 513
Cdd:COG0457   125 RYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALE 204

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1002264378 514 QERQNKAMQDPEIQNILKDPIMQQVLTDFQENPKAAQA 551
Cdd:COG0457   205 QALRKKLAILTLAALAELLLLALALLLALRLAALALYQ 242
STI1 pfam17830
STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 ...
 134-188 7.33e-18

STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 protein.


Pssm-ID: 436075  Cd Length: 55  Bit Score: 77.60  E-value: 7.33e-18
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1002264378 134 GPELWSRMAADPTTRPYLDQPDFMRMLRDVQRNPSSLNNYLSDPRMVQVLSLMLN 188
Cdd:pfam17830   1 DPELLAKLAANPETRALLSDPEFVAKLQQIQKNPSSLQQYMQDPRVMTKLGVLMG 55
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 9-121 4.08e-16

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 81.58  E-value: 4.08e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378   9 GNAAFSAGRFEEAAAHFTDAIALAPDNHVLYSNRSAAYASLHRYPEALADAERTVALRPDWAKGCSRLGAARLGLGDAAG 88
Cdd:COG3914    85 ALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEE 164

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1002264378  89 AVAAYEKGLALEPSN--------------GALKDGLAHARQARRPAP 121
Cdd:COG3914   165 AIAALRRALELDPDNaealnnlgnalqdlGRLEEAIAAYRRALELDP 211
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
260-520 8.26e-16

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 77.35  E-value: 8.26e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 260 KDFETAIQHYTKAMELDDEDVSYLTNRAAVYLEMGKYDECINDCDKAVERGRELhadfkiiSRALTRKGTALAKIakcfK 339
Cdd:COG0457    22 GRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD-------AEALNNLGLALQAL----G 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 340 DYDVAIETYQKALTehrnpdtlkklndaeiakkeleqqeyYDPKIADEEREKGNEFFKQQKYPEAVKHYSEALRRNPKDP 419
Cdd:COG0457    91 RYEEALEDYDKALE--------------------------LDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDA 144

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 420 RVYSNRAACYTKLGAMPEGLKDAEKCIELDPTFSKGYTRKGAIQFFMKEYDKALETYQAGLKHDPNNQELLDGVRRCVQR 499
Cdd:COG0457   145 DALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLL 224

                         250       260
                  ....*....|....*....|.
gi 1002264378 500 INKASRGELSQEELQERQNKA 520
Cdd:COG0457   225 LALALLLALRLAALALYQYRA 245
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
313-488 2.33e-15

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 75.34  E-value: 2.33e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 313 LHADFKIISRALTRKGTALAKIAKCFKDYDVAIETYQKALTEHRNPDTLKKLNDAEIAKKELEQQEYYDPKIADEEREKG 392
Cdd:COG4785     1 LYALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 393 NEFFKQQKYPEAVKHYSEALRRNPKDPRVYSNRAACYTKLGAMPEGLKDAEKCIELDPTFSKGYTRKGAIQFFMKEYDKA 472
Cdd:COG4785    81 VAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELA 160

                         170
                  ....*....|....*.
gi 1002264378 473 LETYQAGLKHDPNNQE 488
Cdd:COG4785   161 IADLEKALELDPNDPE 176
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 361-518 2.51e-15

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 79.27  E-value: 2.51e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 361 LKKLNDAEIAKKELEQQEYYDPKIADEEREKGNEFFKQQKYPEAVKHYSEALRRNPKDPRVYSNRAACYTKLGAMPEGLK 440
Cdd:COG3914    88 LQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIA 167

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1002264378 441 DAEKCIELDPTFSKGYTRKGAIQFFMKEYDKALETYQAGLKHDPNNQELLDGVRRCVQRINKASRGELSQEELQERQN 518
Cdd:COG3914   168 ALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALAR 245
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 1-108 4.57e-15

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 76.75  E-value: 4.57e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378   1 MADEAKAKGNAAFSAGRFEEAAAHFTDAIALAPDNHVLYSNRSAAYASLHRYPEALADAERTVALRPDWAKGCSRLGAAR 80
Cdd:PLN03088    1 MAKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTAC 80

                          90       100
                  ....*....|....*....|....*...
gi 1002264378  81 LGLGDAAGAVAAYEKGLALEPSNGALKD 108
Cdd:PLN03088   81 MKLEEYQTAKAALEKGASLAPGDSRFTK 108
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
8-116 5.88e-15

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 74.66  E-value: 5.88e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378   8 KGNAAFSAGRFEEAAAHFTDAIALAPDNHVLYSNRSAAYASLHRYPEALADAERTVALRPDWAKGCSRLGAARLGLGDAA 87
Cdd:COG0457    14 LGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYE 93

                          90       100
                  ....*....|....*....|....*....
gi 1002264378  88 GAVAAYEKGLALEPSNGALKDGLAHARQA 116
Cdd:COG0457    94 EALEDYDKALELDPDDAEALYNLGLALLE 122
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
9-116 7.87e-15

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 74.27  E-value: 7.87e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378   9 GNAAFSAGRFEEAAAHFTDAIALAPDNHVLYSNRSAAYASLHRYPEALADAERTVALRPDWAKGCSRLGAARLGLGDAAG 88
Cdd:COG0457    49 GLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDE 128

                          90       100
                  ....*....|....*....|....*...
gi 1002264378  89 AVAAYEKGLALEPSNGALKDGLAHARQA 116
Cdd:COG0457   129 AIEAYERALELDPDDADALYNLGIALEK 156
STI1 pfam17830
STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 ...
 514-567 9.16e-15

STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 protein.


Pssm-ID: 436075  Cd Length: 55  Bit Score: 68.74  E-value: 9.16e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1002264378 514 QERQNKAMQDPEIQNILKDPIMQQVLTDFQENPKAAQAHLKNPGVMQKIQKLVS 567
Cdd:pfam17830   2 PELLAKLAANPETRALLSDPEFVAKLQQIQKNPSSLQQYMQDPRVMTKLGVLMG 55
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
322-553 3.55e-14

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 72.35  E-value: 3.55e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 322 RALTRKGTALAKIakcfKDYDVAIETYQKALTEhrnpdtlkklndaeiakkeleqqeyyDPKIADEEREKGNEFFKQQKY 401
Cdd:COG0457     9 EAYNNLGLAYRRL----GRYEEAIEDYEKALEL--------------------------DPDDAEALYNLGLAYLRLGRY 58

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 402 PEAVKHYSEALRRNPKDPRVYSNRAACYTKLGAMPEGLKDAEKCIELDPTFSKGYTRKGAIQFFMKEYDKALETYQAGLK 481
Cdd:COG0457    59 EEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALE 138

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1002264378 482 HDPNNQELLDGVRRCVQRINKASRGELSQEELQERQNKAMQDPEIQNILKDPIMQQVLTDFQENPKAAQAHL 553
Cdd:COG0457   139 LDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKK 210
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 385-525 4.60e-14

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 73.67  E-value: 4.60e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 385 ADEEREKGNEFFKQQKYPEAVKHYSEALRRNPKDPRVYSNRAACYTKLGAMPEGLKDAEKCIELDPTFSKGYTRKGAIQF 464
Cdd:PLN03088    2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACM 81

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1002264378 465 FMKEYDKALETYQAGLKHDPNNQELLDGVRRCVQRInkasrgelsQEELQERQNKAMQDPE 525
Cdd:PLN03088   82 KLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI---------AEEEKDLVQPVPSDLP 133
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 366-490 8.98e-14

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 74.26  E-value: 8.98e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 366 DAEIAKKELEQQEYYDPKIADEEREKGNEFFKQQKYPEAVKHYSEALRRNPKDPRVYSNRAACYTKLGAMPEGLKDAEKC 445
Cdd:COG3914    59 LLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRA 138

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1002264378 446 IELDPTFSKGYTRKGAIQFFMKEYDKALETYQAGLKHDPNNQELL 490
Cdd:COG3914   139 LALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEAL 183
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 251-489 2.03e-13

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 73.09  E-value: 2.03e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 251 KEAGNAAYK-KDFETAIQHYTKAMELdDEDVSYLTNRAAVYLEMGKYDECINDCDKAVergrELHADFkiiSRALTRKGT 329
Cdd:TIGR00990 131 KEKGNKAYRnKDFNKAIKLYSKAIEC-KPDPVYYSNRAACHNALGDWEKVVEDTTAAL----ELDPDY---SKALNRRAN 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 330 A---LAKIAKCFKDYDV--------------AIETYQKALTEHRNPDTLK----KL-------NDAEIAKKELEQQEYYD 381
Cdd:TIGR00990 203 AydgLGKYADALLDLTAsciidgfrneqsaqAVERLLKKFAESKAKEILEtkpeNLpsvtfvgNYLQSFRPKPRPAGLED 282

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 382 PKIADEEREKG--NEFFKQQK------YPEAVKHYSEALRRN---PKDPRVYSNRAACYTKLGAMPEGLKDAEKCIELDP 450
Cdd:TIGR00990 283 SNELDEETGNGqlQLGLKSPEskadesYEEAARAFEKALDLGklgEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP 362

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 1002264378 451 TFSKGYTRKGAIQFFMKEYDKALETYQAGLKHDPNNQEL 489
Cdd:TIGR00990 363 RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDI 401
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 7-103 1.83e-12

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 64.83  E-value: 1.83e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378   7 AKGNAAFSAGRFEEAAAHFTDAIALAPDNHVLYSNRSAAYASLHRYPEALADAERTVALRPDWAKGCSRLGAARLGLGDA 86
Cdd:COG4783    43 LLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRP 122

                          90
                  ....*....|....*..
gi 1002264378  87 AGAVAAYEKGLALEPSN 103
Cdd:COG4783   123 DEAIAALEKALELDPDD 139
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
9-133 2.12e-12

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 66.86  E-value: 2.12e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378   9 GNAAFSAGRFEEAAAHFTDAIALAPDNHVLYSNRSAAYASLHRYPEALADAERTVALRPDWAKGCSRLGAARLGLGDAAG 88
Cdd:COG4785    80 GVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYEL 159

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1002264378  89 AVAAYEKGLALEPSN--GALKDGLAHARQARRPAPASGAGAIGKVFQ 133
Cdd:COG4785   160 AIADLEKALELDPNDpeRALWLYLAERKLDPEKALALLLEDWATAYL 206
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 347-473 2.17e-12

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 69.63  E-value: 2.17e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 347 TYQKALTEHRNP-----DTLKKLNDAEIAKKELEQQEYYDPKIadeeREKGNEFFKQQKYPEAVKHYSEALRRNPkDPRV 421
Cdd:TIGR00990  88 TEEKKSTAPKNApvepaDELPEIDESSVANLSEEERKKYAAKL----KEKGNKAYRNKDFNKAIKLYSKAIECKP-DPVY 162

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1002264378 422 YSNRAACYTKLGAMPEGLKDAEKCIELDPTFSKGYTRKGAIQFFMKEYDKAL 473
Cdd:TIGR00990 163 YSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADAL 214
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
8-120 1.08e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 65.03  E-value: 1.08e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378   8 KGNAAFSAGRFEEAAAHFTDAIALAPDNHVLYSNRSAAYASLHRYPEALADAERTVALRPDWAKGCSRLGAARLGLGDAA 87
Cdd:COG0457    82 LGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYE 161

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1002264378  88 GAVAAYEKGLALEPSNGALKDGLAHARQARRPA 120
Cdd:COG0457   162 EALELLEKLEAAALAALLAAALGEAALALAAAE 194
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 349-486 1.57e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 62.13  E-value: 1.57e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 349 QKALTEHRNPDTLKKLNDAEIAKKELEQQEYYDPKIADEEREKGNEFFKQQKYPEAVKHYSEALRRNPKDPRVYSNRAAC 428
Cdd:COG4783     2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1002264378 429 YTKLGAMPEGLKDAEKCIELDPTFSKGYTRKGAIQFFMKEYDKALETYQAGLKHDPNN 486
Cdd:COG4783    82 LLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 2-116 2.79e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 61.36  E-value: 2.79e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378   2 ADEAKAKGNAAFSAGRFEEAAAHFTDAIALAPDNHVLYSNRSAAYASLHRYPEALADAERTVALRPDWAKGCSRLGAARL 81
Cdd:COG4783     4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1002264378  82 GLGDAAGAVAAYEKGLALEPSNGALKDGLAHARQA 116
Cdd:COG4783    84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRA 118
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 392-488 5.88e-11

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 60.40  E-value: 5.88e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 392 GNEFFKQQKYPEAVKHYSEALRRNPKDPRVYSNRAACYTKLGAMPEGLKDAEKCIELDPTFSKGYTRKGAIQFFMKEYDK 471
Cdd:COG4235    24 GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAE 103

                          90
                  ....*....|....*..
gi 1002264378 472 ALETYQAGLKHDPNNQE 488
Cdd:COG4235   104 AIAAWQKLLALLPADAP 120
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 385-517 6.35e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 60.59  E-value: 6.35e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 385 ADEEREKGNEFFKQQKYPEAVKHYSEALRRNPKDPRVYSNRAACYTKLGAMPEGLKDAEKCIELDPTFSKGYTRKGAIQF 464
Cdd:COG4783     4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1002264378 465 FMKEYDKALETYQAGLKHDPNNQELLDGVRRCVQRINKASRGELSQEELQERQ 517
Cdd:COG4783    84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 9-103 1.08e-10

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 59.63  E-value: 1.08e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378   9 GNAAFSAGRFEEAAAHFTDAIALAPDNHVLYSNRSAAYASLHRYPEALADAERTVALRPDWAKGCSRLGAARLGLGDAAG 88
Cdd:COG4235    24 GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAE 103

                          90
                  ....*....|....*
gi 1002264378  89 AVAAYEKGLALEPSN 103
Cdd:COG4235   104 AIAAWQKLLALLPAD 118
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 2-101 2.17e-10

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 59.20  E-value: 2.17e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378   2 ADEAKAKGNAAFSAGRFEEAAAHFTDAIALAPDNHVLYSNRSAAYASLHRYPEALADAERTVALRPDWAKGCSRLGAARL 81
Cdd:COG5010    54 FAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLL 133

                          90       100
                  ....*....|....*....|
gi 1002264378  82 GLGDAAGAVAAYEKGLALEP 101
Cdd:COG5010   134 SLGQDDEAKAALQRALGTSP 153
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 340-454 2.25e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 63.47  E-value: 2.25e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 340 DYDVAIETYQKALTehRNPD----------TLKKLNDAEIAKKELEQQEYYDPKIADEEREKGNEFFKQQKYPEAVKHYS 409
Cdd:COG3914    93 RYEEALALYRRALA--LNPDnaealfnlgnLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALR 170

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1002264378 410 EALRRNPKDPRVYSNRAACYTKLGAMPEGLKDAEKCIELDPTFSK 454
Cdd:COG3914   171 RALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNAD 215
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
29-117 7.07e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 59.64  E-value: 7.07e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378  29 IALAPDNHVLYSNRSAAYASLHRYPEALADAERTVALRPDWAKGCSRLGAARLGLGDAAGAVAAYEKGLALEPSNGALKD 108
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80


                  ....*....
gi 1002264378 109 GLAHARQAR 117
Cdd:COG0457    81 NLGLALQAL 89
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
11-102 2.19e-09

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 54.79  E-value: 2.19e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378  11 AAFSAGRFEEAAAHFTDAIALAPDNHVLYSNRSAAYASLHRYPEALAdAERTVALRPDWAKGCSRLGAARLGLGDAAGAV 90
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                          90
                  ....*....|..
gi 1002264378  91 AAYEKGLALEPS 102
Cdd:COG3063    80 AYLERALELDPS 91
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
395-488 4.74e-09

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 53.64  E-value: 4.74e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 395 FFKQQKYPEAVKHYSEALRRNPKDPRVYSNRAACYTKLGAMPEGLKdAEKCIELDPTFSKGYTRKGAIQFFMKEYDKALE 474
Cdd:COG3063     2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80

                          90
                  ....*....|....
gi 1002264378 475 TYQAGLKHDPNNQE 488
Cdd:COG3063    81 YLERALELDPSALR 94
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
412-490 2.54e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 55.01  E-value: 2.54e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1002264378 412 LRRNPKDPRVYSNRAACYTKLGAMPEGLKDAEKCIELDPTFSKGYTRKGAIQFFMKEYDKALETYQAGLKHDPNNQELL 490
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEAL 79
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 9-103 2.99e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 55.12  E-value: 2.99e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378   9 GNAAFSAGRFEEAAAHFTDAIALAPDNHVLYSNRSAAYASLHRYPEALADAERTVALRPDWAKGCSRLGAARLGLGDAAG 88
Cdd:COG2956    83 AQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDE 162

                          90
                  ....*....|....*
gi 1002264378  89 AVAAYEKGLALEPSN 103
Cdd:COG2956   163 AIEALEKALKLDPDC 177
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 261-490 3.20e-08

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 56.63  E-value: 3.20e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 261 DFETAIQHYTKAMEL--DDEDVSYLTNRAavYLEMGKYDECINDCDKAVERGRELHADFKIisralTRKGTALAKiakcf 338
Cdd:TIGR02917  71 DYAAAEKELRKALSLgyPKNQVLPLLARA--YLLQGKFQQVLDELPGKTLLDDEGAAELLA-----LRGLAYLGL----- 138

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 339 KDYDVAIETYQKALT-EHRNPDTLKKL-------NDAEIAKKELEQQEYYDPKIADEEREKGNEFFKQQKYPEAVKHYSE 410
Cdd:TIGR02917 139 GQLELAQKSYEQALAiDPRSLYAKLGLaqlalaeNRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRK 218

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 411 ALRRNPKDPRVYSNRAACYTKLGAMPEGLKDAEKCIELDPTFSKGYTRKGAIQFFMKEYDKALETYQAGLKHDPNNQELL 490
Cdd:TIGR02917 219 AIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPAL 298
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 361-484 3.78e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 53.04  E-value: 3.78e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 361 LKKLNDAEIAKKELEQQEYYDPKIADEEREKGNEFFKQQKYPEAVKHYSEALRRNPKDPRVYSNRAACYTKLGAMPEGLK 440
Cdd:COG5010    30 ALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKE 109

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1002264378 441 DAEKCIELDPTFSKGYTRKGAIQFFMKEYDKALETYQAGLKHDP 484
Cdd:COG5010   110 YYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 403-490 5.42e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 51.93  E-value: 5.42e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 403 EAVKHYSEALRRNPKDPRVYSNRAACYTKLGAMPEGLKDAEKCIELDPTFSKGYTRKGAIQFFMKEYDKALETYQAGLKH 482
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80


                  ....*...
gi 1002264378 483 DPNNQELL 490
Cdd:COG4235    81 DPDNPEAL 88
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 9-122 7.50e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 53.96  E-value: 7.50e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378   9 GNAAFSAGRFEEAAAHFTDAIALAPDNHVLYSNRSAAYASLHRYPEALADAERTVALRPDWAKGCSRLGAARLGLGDAAG 88
Cdd:COG2956   151 AELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEE 230

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1002264378  89 AVAAYEKGLALEPSNGALKDGLAHARQARRPAPA 122
Cdd:COG2956   231 ALELLRKALELDPSDDLLLALADLLERKEGLEAA 264
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 258-485 8.90e-08

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 55.09  E-value: 8.90e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 258 YKKDFETAIQHYTKAMELDDEDVSYLTNRAAVYLEMGKYDECINDCDKAVERGRelhadfkiiSRALTRKGTALAKIAKc 337
Cdd:TIGR02917 205 SLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAP---------NSPLAHYLKALVDFQK- 274

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 338 fKDYDVAIETYQKALTEhrNPDTLK----------KLNDAEIAKKELEQQEYYDPKIADEEREKGNEFFKQQKYPEAVKH 407
Cdd:TIGR02917 275 -KNYEDARETLQDALKS--APEYLPalllagaseyQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIAT 351

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1002264378 408 YSEALRRNPKDPRVYSNRAACYTKLGAMPEGLKDAEKCIELDPTFSKGYTRKGAIQFFMKEYDKALETYQAGLKHDPN 485
Cdd:TIGR02917 352 LSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE 429
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 2-121 9.00e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 55.00  E-value: 9.00e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378   2 ADEAKAKGNAAFSAGRFEEAAAHFTDAIALAPDNHVLYSNRSAAYASLHRYPEALADAERTVALRPDWAKGCSRLGAARL 81
Cdd:COG3914    44 ALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLL 123

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1002264378  82 GLGDAAGAVAAYEKGLALEPSN--------------GALKDGLAHARQARRPAP 121
Cdd:COG3914   124 ALGRLEEALAALRRALALNPDFaeaylnlgealrrlGRLEEAIAALRRALELDP 177
TPR_11 pfam13414
TPR repeat;
392-433 1.36e-07

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 47.85  E-value: 1.36e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1002264378 392 GNEFFKQQKYPEAVKHYSEALRRNPKDPRVYSNRAACYTKLG 433
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 259-555 1.43e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 54.70  E-value: 1.43e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 259 KKDFETAIQHYTKAMELDDEDVSYLTNRAAVYLEMGKYDECINDCDKAVERGREL-HADFKIISRALTR----KGTALAK 333
Cdd:TIGR02917 376 LGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELgRADLLLILSYLRSgqfdKALAAAK 455

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 334 ------------------IAKCFKDYDVAIETYQKALTehRNPDTLKKL----------NDAEIAKKELEQQEYYDPK-- 383
Cdd:TIGR02917 456 klekkqpdnaslhnllgaIYLGKGDLAKAREAFEKALS--IEPDFFPAAanlaridiqeGNPDDAIQRFEKVLTIDPKnl 533

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 384 -----IADEEREKGNEffkqqkyPEAVKHYSEALRRNPKD----------------------------------PRVYSN 424
Cdd:TIGR02917 534 railaLAGLYLRTGNE-------EEAVAWLEKAAELNPQEiepalalaqyylgkgqlkkalailneaadaapdsPEAWLM 606

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 425 RAACYTKLGAMPEGLKDAEKCIELDPTFSKGYTRKGAIQFFMKEYDKALETYQAGLKHDPNNQELLdgvRRCVQRINKAS 504
Cdd:TIGR02917 607 LGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQ---IGLAQLLLAAK 683

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1002264378 505 RGELSQEELQERQNKAMQDPEIQNILKDPIMQqvltdfQENPKAAQAHLKN 555
Cdd:TIGR02917 684 RTESAKKIAKSLQKQHPKAALGFELEGDLYLR------QKDYPAAIQAYRK 728
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 390-522 1.64e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 52.81  E-value: 1.64e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 390 EKGNEFFKQQKYPEAVKHYSEALRRNPKDPRVYSNRAACYTKLGAMPEGLKDAEKCIELDPTFSKGYTRKGAIQFFMKEY 469
Cdd:COG2956    13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLL 92

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1002264378 470 DKALETYQAGLKHDPNNQELLDGVRRCVQRINKASRGELSQEELQERQNKAMQ 522
Cdd:COG2956    93 DRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAH 145
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 6-90 4.89e-07

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 52.68  E-value: 4.89e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378   6 KAKGNAAFSAGRFEEAAAHFTDAIALAPDNhVLYSNRSAAYASLHRYPEALADAERTVALRPDWAKGCSRLGAARLGLGD 85
Cdd:TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIECKPDP-VYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK 209


                  ....*
gi 1002264378  86 AAGAV 90
Cdd:TIGR00990 210 YADAL 214
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 259-486 5.13e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 52.78  E-value: 5.13e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 259 KKDFETAIQHYTKAMELDDEDVSYLTNRAAVYLEMGKYDECINDCDKAVERGRELHadfkiisraLTRKGTALAKIAKcf 338
Cdd:TIGR02917 274 KKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSH---------QARRLLASIQLRL-- 342

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 339 KDYDVAIETYQKAL-TEHRNPDTLK-------KLNDAEIAKKELEQQEYYDPKIADEEREKGNEFFKQQKYPEAVKHYSE 410
Cdd:TIGR02917 343 GRVDEAIATLSPALgLDPDDPAALSllgeaylALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLET 422

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1002264378 411 ALRRNPKDPRVYSNRAACYTKLGAMPEGLKDAEKCIELDPTFSKGYTRKGAIQFFMKEYDKALETYQAGLKHDPNN 486
Cdd:TIGR02917 423 AAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDF 498
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 2-489 5.36e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 52.78  E-value: 5.36e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378   2 ADEAKAKGNAAFSAGRFEEAAAHFTDAIALAPDNHVLYSNRSAAYASLHRYPEALADAERTVALRPDWAKGCSRLGAARL 81
Cdd:TIGR02917 397 AAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYL 476

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378  82 GLGDAAGAVAAYEKGLALEPSNGALKDGLAH-ARQARRPAPASgagaigKVFQgpelwSRMAADPTTRPYLDQpdfMRML 160
Cdd:TIGR02917 477 GKGDLAKAREAFEKALSIEPDFFPAAANLARiDIQEGNPDDAI------QRFE-----KVLTIDPKNLRAILA---LAGL 542

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 161 RDVQRNPSSLNNYLSDP--RMVQVLSLMLNL---RLPNNDAPPRPPAQSTPPPPPQQQQHQPETKAREPEPEpepmevte 235
Cdd:TIGR02917 543 YLRTGNEEEAVAWLEKAaeLNPQEIEPALALaqyYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAA-------- 614

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 236 eekerkerkaaaqeekeagnaaykKDFETAIQHYTKAMELDDEDVSYLTNRAAVYLEMGKYDECIndcdKAVERGRELHA 315
Cdd:TIGR02917 615 ------------------------GDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAI----TSLKRALELKP 666

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 316 DFKIISRALTR------KGTALAKIAKCF---------------------KDYDVAIETYQKALTEHRNPDTLKKLNDAE 368
Cdd:TIGR02917 667 DNTEAQIGLAQlllaakRTESAKKIAKSLqkqhpkaalgfelegdlylrqKDYPAAIQAYRKALKRAPSSQNAIKLHRAL 746

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 369 I-------AKKELEQQEYYDPKIADEEREKGNEFFKQQKYPEAVKHYSEALRRNPKDPRVYSNRAACYTKLGAmPEGLKD 441
Cdd:TIGR02917 747 LasgntaeAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKD-PRALEY 825

                         490       500       510       520       530
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1002264378 442 AEKCIEL---DPTFSKGYtrkGAIQFFMKEYDKALETYQAGLKHDPNNQEL 489
Cdd:TIGR02917 826 AERALKLapnIPAILDTL---GWLLVEKGEADRALPLLRKAVNIAPEAAAI 873
STI1 smart00727
Heat shock chaperonin-binding motif;
523-562 5.51e-07

Heat shock chaperonin-binding motif;


Pssm-ID: 128966  Cd Length: 41  Bit Score: 46.11  E-value: 5.51e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 1002264378  523 DPEIQNILKDPIMQQVLTDFQENPKAAQAHLK-NPGVMQKI 562
Cdd:smart00727   1 DPEMALRLQNPQVQSLLQDMQQNPDMLAQMLQeNPQLLQLI 41
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 20-103 1.18e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 48.08  E-value: 1.18e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378  20 EAAAHFTDAIALAPDNHVLYSNRSAAYASLHRYPEALADAERTVALRPDWAKGCSRLGAARLGLGDAAGAVAAYEKGLAL 99
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80


                  ....
gi 1002264378 100 EPSN 103
Cdd:COG4235    81 DPDN 84
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 248-450 1.50e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 47.88  E-value: 1.50e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 248 QEEKEAGNAAYKKDFETAIQHYTKAMELDDEDVSYLTNRAAVYLEMGKYDEcindcdkavergrelhadfkiisraltrk 327
Cdd:COG4783     6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDE----------------------------- 56

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 328 gtalakiakcfkdydvAIETYQKALtehrnpdtlkklndaEIAKKELEQQEYYdpkiadeerekGNEFFKQQKYPEAVKH 407
Cdd:COG4783    57 ----------------AIVLLHEAL---------------ELDPDEPEARLNL-----------GLALLKAGDYDEALAL 94

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1002264378 408 YSEALRRNPKDPRVYSNRAACYTKLGAMPEGLKDAEKCIELDP 450
Cdd:COG4783    95 LEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 16-113 2.15e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 50.85  E-value: 2.15e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378  16 GRFEEAAAHFTDAIALAPDNHVLYSNrsAAYASLHRY-PEALADAERTVALRPDWAKGCSRLGAARLGLGDAAGAVAAYE 94
Cdd:TIGR02917 784 KDYDKAIKHYQTVVKKAPDNAVVLNN--LAWLYLELKdPRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLR 861

                          90
                  ....*....|....*....
gi 1002264378  95 KGLALEPSNGALKDGLAHA 113
Cdd:TIGR02917 862 KAVNIAPEAAAIRYHLALA 880
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 250-351 2.46e-06

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 49.79  E-value: 2.46e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 250 EKEAGNAAYKKDFETAIQHYTKAMELDDEDVSYLTNRAAVYLEMGKYDECINDCDKAVERGRELHadfkiisRALTRKGT 329
Cdd:PLN03088    6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLA-------KAYLRKGT 78

                          90       100
                  ....*....|....*....|..
gi 1002264378 330 AlakiakCFKdydvaIETYQKA 351
Cdd:PLN03088   79 A------CMK-----LEEYQTA 89
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
11-120 2.59e-06

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 48.76  E-value: 2.59e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378  11 AAFSAGRFEEAAAHFTDAIALAPDNHVLYSNRSAAYASLHRYPEALADAERTVALRPDWAKGCSRLGAARLGLGDAAGAV 90
Cdd:COG4785    48 LAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAAL 127

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1002264378  91 AAYEKGLALEPSNGA--LKDGLAHARQARRPA 120
Cdd:COG4785   128 EDFDRALELDPDYAYayLNRGIALYYLGRYEL 159
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
8-120 3.68e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 48.46  E-value: 3.68e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378   8 KGNAAFSAGRFEEAAAHFTDAIALAPDNHVLYSNRSAAYASLHRYPEALADAERTVALRPDWAKGCSRLGAARLGLGDAA 87
Cdd:COG0457   116 LGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEV 195

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1002264378  88 GAVAAYEKGLALEPSNGALKDGLAHARQARRPA 120
Cdd:COG0457   196 LLALLLALEQALRKKLAILTLAALAELLLLALA 228
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 254-362 4.00e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 49.61  E-value: 4.00e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 254 GNAAYK-KDFETAIQHYTKAMELDDEDVSYLTNRAAVYLEMGKYDECINDCDKAVergrELHADFkiiSRALTRKGTALA 332
Cdd:COG3914   119 GNLLLAlGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRAL----ELDPDN---AEALNNLGNALQ 191

                          90       100       110
                  ....*....|....*....|....*....|
gi 1002264378 333 KIakcfKDYDVAIETYQKALTehRNPDTLK 362
Cdd:COG3914   192 DL----GRLEEAIAAYRRALE--LDPDNAD 215
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 304-450 9.83e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 45.72  E-value: 9.83e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 304 DKAVERGRELHADFKIISRALTRKGTALAKIAKCFKDYDVAIETYQKALTEHRNPDTLKKLNDAEIAKKELEQQEYYDPK 383
Cdd:COG5010     7 FDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPN 86

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1002264378 384 IADEEREKGNEFFKQQKYPEAVKHYSEALRRNPKDPRVYSNRAACYTKLGAMPEGLKDAEKCIELDP 450
Cdd:COG5010    87 NPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 16-486 1.63e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 47.77  E-value: 1.63e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378  16 GRFEEAAAHFTDAIALAPDNHVLYSNRSAAYASLHRYPEALADAERTVALRPDWAKGCSRLGAARLGLGDAAGAVAAYEK 95
Cdd:TIGR02917 343 GRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLET 422

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378  96 GLALEPSNGalKDGLAHARQARRPAPASGAGAIGKvfqgpELWSRMAADPTTRPYLDQPDFMRmlRDVQRNPSSLNNYLS 175
Cdd:TIGR02917 423 AAQLDPELG--RADLLLILSYLRSGQFDKALAAAK-----KLEKKQPDNASLHNLLGAIYLGK--GDLAKAREAFEKALS 493

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 176 -DPRMVQVLSLMLNLRLPNNDAPprppaqstpppppqqqqhqpETKAREPEPEPEPMEVTEEEKerkerkaaaqeeKEAG 254
Cdd:TIGR02917 494 iEPDFFPAAANLARIDIQEGNPD--------------------DAIQRFEKVLTIDPKNLRAIL------------ALAG 541

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 255 NAAYKKDFETAIQHYTKAMELDDEDVSYLTNRAAVYLEMGKYDECINDCDKAVE-----------RGRELHA--DFKIIS 321
Cdd:TIGR02917 542 LYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADaapdspeawlmLGRAQLAagDLNKAV 621

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 322 RALTR-------KGTALAKIAK---CFKDYDVAIETYQKALTEHRNPDTLKKL--------NDAEIAKKELEQQEYYDPK 383
Cdd:TIGR02917 622 SSFKKllalqpdSALALLLLADayaVMKNYAKAITSLKRALELKPDNTEAQIGlaqlllaaKRTESAKKIAKSLQKQHPK 701

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 384 IADEEREKGNEFFKQQKYPEAVKHYSEALRRNPKDPRVySNRAACYTKLGAMPEGLKDAEKCIELDPTFSKGYTRKGAIQ 463
Cdd:TIGR02917 702 AALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNA-IKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELY 780

                         490       500
                  ....*....|....*....|...
gi 1002264378 464 FFMKEYDKALETYQAGLKHDPNN 486
Cdd:TIGR02917 781 LAQKDYDKAIKHYQTVVKKAPDN 803
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 9-117 1.83e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 46.65  E-value: 1.83e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378   9 GNAAFSAGRFEEAAAHFTDAIALAPDNHVLYSNRSAAYASLHRYPEALADAERTVALRPDWAKGCSRLGAARLGLGDAAG 88
Cdd:COG2956   117 AEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEE 196

                          90       100
                  ....*....|....*....|....*....
gi 1002264378  89 AVAAYEKGLALEPSNGALKDGLAHARQAR 117
Cdd:COG2956   197 AIAALERALEQDPDYLPALPRLAELYEKL 225
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 261-352 2.23e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 44.23  E-value: 2.23e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 261 DFETAIQHYTKAMELDDEDVSYLTNRAAVYLEMGKYDECINDCDKAVergrELHADFkiiSRALTRKGTALAKIakcfKD 340
Cdd:COG4235    32 RYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERAL----ALDPDN---PEALYLLGLAAFQQ----GD 100

                          90
                  ....*....|..
gi 1002264378 341 YDVAIETYQKAL 352
Cdd:COG4235   101 YAEAIAAWQKLL 112
BTAD smart01043
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. ...
 4-120 2.52e-05

Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.


Pssm-ID: 198111 [Multi-domain]  Cd Length: 145  Bit Score: 44.60  E-value: 2.52e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378    4 EAKAKGNAAFSAGRFEEAAAHFTDAIALApdnhvlysnRSAAYASLHRYPEALADAERtvaLRPDWAKGCSRLGAARLGL 83
Cdd:smart01043   7 ERLVAAARAALAADPEAALALLEAALALY---------RGPLLADVPDEDWAEAERER---LRELRLEALEALAEALLAL 74

                           90       100       110
                   ....*....|....*....|....*....|....*....
gi 1002264378   84 GDAAGAVAAYEKGLALEPSNGALKDGL--AHARQARRPA 120
Cdd:smart01043  75 GRHEEALALLERLLALDPLRERLHRLLmrALYRAGRRAE 113
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
259-398 3.48e-05

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 45.29  E-value: 3.48e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 259 KKDFETAIQHYTKAMELDDEDVSYLTNRAAVYLEMGKYDECINDCDKAVERGRElHADfkiisrALTRKGTALAKIakcf 338
Cdd:COG4785    86 LGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPD-YAY------AYLNRGIALYYL---- 154

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1002264378 339 KDYDVAIETYQKALTEHRNPDT------LKKLNDAEIAKKELEQQEYYDPKIADEEREKGNEFFKQ 398
Cdd:COG4785   155 GRYELAIADLEKALELDPNDPEralwlyLAERKLDPEKALALLLEDWATAYLLQGDTEEARELFKL 220
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
363-450 4.34e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 42.46  E-value: 4.34e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 363 KLNDAEIAKKELEQQEYYDPKIADEEREKGNEFFKQQKYPEAVKhYSEALRRNPKDPRVYSNRAACYTKLGAMPEGLKDA 442
Cdd:COG3063     4 KLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYL 82


                  ....*...
gi 1002264378 443 EKCIELDP 450
Cdd:COG3063    83 ERALELDP 90
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 7-118 6.06e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 45.11  E-value: 6.06e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378   7 AKGNAAFSAGRFEEAAAHFTDAIALAPDNHVLYSNRSAAYASLHRYPEALADAERTVALRPDWAKGCSRLGAARLGLGDA 86
Cdd:COG2956    13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLL 92

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1002264378  87 AGAVAAYEKGLALEPSNGALKDGLAHARQARR 118
Cdd:COG2956    93 DRAEELLEKLLELDPDDAEALRLLAEIYEQEG 124
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 344-463 7.63e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 42.69  E-value: 7.63e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 344 AIETYQKALteHRNPD----------TLKKLNDAEIAKKELEQQEYYDPKIADEEREKGNEFFKQQKYPEAVKHYSEALR 413
Cdd:COG4235     2 AIARLRQAL--AANPNdaegwlllgrAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALA 79

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1002264378 414 RNPKDPRVYSNRAACYTKLGAMPEGLKDAEKCIELDPTFSKGYTRKGAIQ 463
Cdd:COG4235    80 LDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASIA 129
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 2-117 8.93e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 43.03  E-value: 8.93e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378   2 ADEAKAKGNAAFSAGRFEEAAAHFTDAIALAPDNHVLYSNRSAAYASLHRYPEALADAERTVALRPDWAKGCSRLGAARL 81
Cdd:COG5010    20 LRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYS 99

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1002264378  82 GLGDAAGAVAAYEKGLALEPSNGALKDGLAHARQAR 117
Cdd:COG5010   100 RSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSL 135
TPR_12 pfam13424
Tetratricopeptide repeat;
283-352 9.84e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 40.83  E-value: 9.84e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1002264378 283 LTNRAAVYLEMGKYDECINDCDKAVERGRELH-ADFKIISRALtrkgTALAKIAKCFKDYDVAIETYQKAL 352
Cdd:pfam13424   6 LNNLAAVLRRLGRYDEALELLEKALEIARRLLgPDHPLTATTL----LNLGRLYLELGRYEEALELLERAL 72
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 394-488 1.10e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 41.90  E-value: 1.10e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 394 EFFKQQKYPEAVKHYSEALRRNPKD---PRVYSNRAACYTKLGAMPEGLKDAEKCIELDPTFSK---GYTRKGAIQFFMK 467
Cdd:COG1729     2 ALLKAGDYDEAIAAFKAFLKRYPNSplaPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELG 81

                          90       100
                  ....*....|....*....|.
gi 1002264378 468 EYDKALETYQAGLKHDPNNQE 488
Cdd:COG1729    82 DYDKARATLEELIKKYPDSEA 102
TPR_1 pfam00515
Tetratricopeptide repeat;
453-486 2.17e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 38.56  E-value: 2.17e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1002264378 453 SKGYTRKGAIQFFMKEYDKALETYQAGLKHDPNN 486
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
259-352 3.02e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 40.15  E-value: 3.02e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 259 KKDFETAIQHYTKAMELDDEDVSYLTNRAAVYLEMGKYDECInDCDKAVErgrelhadfkiISRALTRKGTALAKIAKCF 338
Cdd:COG3063     5 LGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALK-----------LDPNNAEALLNLAELLLEL 72

                          90
                  ....*....|....
gi 1002264378 339 KDYDVAIETYQKAL 352
Cdd:COG3063    73 GDYDEALAYLERAL 86
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 7-111 3.12e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 42.79  E-value: 3.12e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378   7 AKGNAAFSAGRFEEAAAHFTDAIALAPDNHVLYSNRSAAYASLHRYPEALADAERTVALRPDWAKGCSRLGAARLGLGDA 86
Cdd:COG2956    47 ALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDW 126

                          90       100
                  ....*....|....*....|....*
gi 1002264378  87 AGAVAAYEKGLALEPSNGALKDGLA 111
Cdd:COG2956   127 EKAIEVLERLLKLGPENAHAYCELA 151
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 390-495 3.26e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 43.00  E-value: 3.26e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 390 EKGNEFFKQQKYPEAVKHYSEALRRNPKDPRVYSNRAACYTKLGAMPEGLKDAEKCIELDPtfSKGYTR----------K 459
Cdd:cd24142     5 EKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDP--DGGYEKylylgqlsggE 82

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1002264378 460 GAIQFFMKEYDKALETYQAGLKHDPNNQELLDGVRR 495
Cdd:cd24142    83 EALQYYEKGIEILEEELQALQAASAEAEEEAEELKR 118
MamA NF040959
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise ...
 374-485 4.04e-04

magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise magnetic mineral crystals in magnetotactic bacteria (MTB). Magnetosomes are important for MTB to search for preferred microaerophilic environment. Proteins of this family typically contain five tetra-trico-peptide repeat (TPR) motifs. Based on structural analyses, MamA forms a large homooligomer through self-recognition to regulate protein-protein interaction in magnetosomes.


Pssm-ID: 468889 [Multi-domain]  Cd Length: 204  Bit Score: 41.98  E-value: 4.04e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 374 LEQQEYYDPKIADEEREKGNEFFKQQKYPEAVKHYSEALRRNPKDPRVYSNRAACYTKLGAMPEGLKDAEKCIELDPTFS 453
Cdd:NF040959   60 LEQVARIDPDDVEALYRLGVAYLKTGQYDRAIKVLEKVLSLAPDHVKAAYRKGVALLKIKDYEKAVEDLEEALEEKPDNF 139

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1002264378 454 KGYTRKGAIQFFMKEYDKALETYQAGLKHDPN 485
Cdd:NF040959  140 NLNYRLGLALDGLGQYDKAIEAFQKALELDPN 171
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 265-427 5.69e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 40.37  E-value: 5.69e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 265 AIQHYTKAMELDDEDVSYLTNRAAVYLEMGKYDECINDCDKAVERGRElHADfkiisrALTRKGTALAKIAkcfkDYDVA 344
Cdd:COG4235     2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPD-NAD------ALLDLAEALLAAG----DTEEA 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 345 IETYQKALT-EHRNPDTLKKLndaeiakkeleqqeyydpkiadeerekGNEFFKQQKYPEAVKHYSEALRRNPKDPRVYS 423
Cdd:COG4235    71 EELLERALAlDPDNPEALYLL---------------------------GLAAFQQGDYAEAIAAWQKLLALLPADAPARL 123


                  ....
gi 1002264378 424 NRAA 427
Cdd:COG4235   124 LEAS 127
COG3899 COG3899
Predicted ATPase [General function prediction only];
9-99 6.18e-04

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 42.92  E-value: 6.18e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378    9 GNAAFSAGRFEEAAAHFTDAIALAPDNHV------LYSNRSAAYASLHRYPEALADAERTVALRPDWAKGCSRLG----- 77
Cdd:COG3899    712 ARRALARGAYAEALRYLERALELLPPDPEeeyrlaLLLELAEALYLAGRFEEAEALLERALAARALAALAALRHGnppas 791

                           90       100
                   ....*....|....*....|....*...
gi 1002264378   78 ------AARLGLGDAAGAVAAYEKGLAL 99
Cdd:COG3899    792 arayanLGLLLLGDYEEAYEFGELALAL 819
TPR_1 pfam00515
Tetratricopeptide repeat;
391-418 6.99e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 37.40  E-value: 6.99e-04
                          10        20
                  ....*....|....*....|....*...
gi 1002264378 391 KGNEFFKQQKYPEAVKHYSEALRRNPKD 418
Cdd:pfam00515   7 LGNAYFKLGKYDEALEYYEKALELNPNN 34
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
45-118 7.35e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 39.00  E-value: 7.35e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1002264378  45 AYASLHRYPEALADAERTVALRPDWAKGCSRLGAARLGLGDAAGAVAaYEKGLALEPSNGALKDGLAHARQARR 118
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELG 73
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 256-355 8.93e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 40.33  E-value: 8.93e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 256 AAYKKDFETAIQHYTKAMELDDEDVSYLTNRAAVYLEMGKYDECINDCDKAVERGRELHADFKIISRALTRKGtalakia 335
Cdd:COG5010    64 YNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLG------- 136

                          90       100
                  ....*....|....*....|
gi 1002264378 336 kcfkDYDVAIETYQKALTEH 355
Cdd:COG5010   137 ----QDDEAKAALQRALGTS 152
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 453-486 9.69e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 36.66  E-value: 9.69e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1002264378  453 SKGYTRKGAIQFFMKEYDKALETYQAGLKHDPNN 486
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR_1 pfam00515
Tetratricopeptide repeat;
419-452 1.39e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 36.24  E-value: 1.39e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1002264378 419 PRVYSNRAACYTKLGAMPEGLKDAEKCIELDPTF 452
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 11-118 1.94e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 38.05  E-value: 1.94e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378  11 AAFSAGRFEEAAAHFTDAIALAPDNHVL---YSNRSAAYASLHRYPEALADAERTVALRPDWAKGCS---RLGAARLGLG 84
Cdd:COG1729     2 ALLKAGDYDEAIAAFKAFLKRYPNSPLApdaLYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDallKLGLSYLELG 81

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1002264378  85 DAAGAVAAYEKGLALEPSNgalkdglAHARQARR 118
Cdd:COG1729    82 DYDKARATLEELIKKYPDS-------EAAKEARA 108
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
9-68 1.99e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 37.84  E-value: 1.99e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378   9 GNAAFSAGRFEEAAAhFTDAIALAPDNHVLYSNRSAAYASLHRYPEALADAERTVALRPD 68
Cdd:COG3063    33 GLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPS 91
BTAD pfam03704
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. ...
 4-101 2.15e-03

Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.


Pssm-ID: 397662 [Multi-domain]  Cd Length: 146  Bit Score: 38.80  E-value: 2.15e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378   4 EAKAKGNAAFSAGRFEEAAAHFTDAIALApdnhvlysnRSAAYASLHRYPEALADAERTVALRPDwakGCSRLGAARLGL 83
Cdd:pfam03704   8 RLVRAGRAALAAGDPAEAARLLRAALALW---------RGPALADLPAGPWLEAERARLEELRLE---ALEARAEADLRL 75

                          90
                  ....*....|....*...
gi 1002264378  84 GDAAGAVAAYEKGLALEP 101
Cdd:pfam03704  76 GRHEEALPELEALVAAHP 93
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
9-95 2.31e-03

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 39.87  E-value: 2.31e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378   9 GNAAFSAGRFEEAAAHFTDAIA--LAPDNHVLYSNRSAAYAsLHRYPEALADAERTVALRPDWAKGCSRLGAARL--GLG 84
Cdd:COG4700    96 ADALLELGRYDEAIELYEEALTgiFADDPHILLGLAQALFE-LGRYAEALETLEKLIAKNPDFKSSDAHLLYARAleALG 174

                          90
                  ....*....|.
gi 1002264378  85 DAAGAVAAYEK 95
Cdd:COG4700   175 DLEAAEAELEA 185
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 391-418 2.39e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 35.89  E-value: 2.39e-03
                           10        20
                   ....*....|....*....|....*...
gi 1002264378  391 KGNEFFKQQKYPEAVKHYSEALRRNPKD 418
Cdd:smart00028   7 LGNAYLKLGDYDEALEYYEKALELDPNN 34
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
248-433 2.53e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 39.51  E-value: 2.53e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 248 QEEKEAGNAAYKKDFETAIQHYTKAMELDDedVSYLTNRAAVYLEMGKYDECINDCDKAVErgreLHADFkiiSRALTRK 327
Cdd:COG4785    43 DLALALAAAALAAAALAAERIDRALALPDL--AQLYYERGVAYDSLGDYDLAIADFDQALE----LDPDL---AEAYNNR 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378 328 GTALAKIakcfKDYDVAIETYQKALtehrnpdtlkklndaeiakkELeqqeyyDPKIADEEREKGNEFFKQQKYPEAVKH 407
Cdd:COG4785   114 GLAYLLL----GDYDAALEDFDRAL--------------------EL------DPDYAYAYLNRGIALYYLGRYELAIAD 163

                         170       180
                  ....*....|....*....|....*.
gi 1002264378 408 YSEALRRNPKDPRVYSNRAACYTKLG 433
Cdd:COG4785   164 LEKALELDPNDPERALWLYLAERKLD 189
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 261-308 4.82e-03

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 39.15  E-value: 4.82e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1002264378 261 DFETAIQHYTKAMELDDEDVSYLTNRAAVYLEMGKYDECINDCDKAVE 308
Cdd:cd24142    15 NFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIE 62
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 7-98 5.85e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 38.94  E-value: 5.85e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378   7 AKGNAAFSAGRFEEAAAHFTDAIALAPDNHVLYSNRSAAYASLHRYPEALADAERTVALRPDwAKGCSRLGAARLGLGDA 86
Cdd:COG2956   183 LLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-DDLLLALADLLERKEGL 261

                          90
                  ....*....|..
gi 1002264378  87 AGAVAAYEKGLA 98
Cdd:COG2956   262 EAALALLERQLR 273
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 280-308 5.87e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 34.73  E-value: 5.87e-03
                           10        20
                   ....*....|....*....|....*....
gi 1002264378  280 VSYLTNRAAVYLEMGKYDECINDCDKAVE 308
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALE 29
TPR_1 pfam00515
Tetratricopeptide repeat;
283-308 5.97e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 34.70  E-value: 5.97e-03
                          10        20
                  ....*....|....*....|....*.
gi 1002264378 283 LTNRAAVYLEMGKYDECINDCDKAVE 308
Cdd:pfam00515   4 LYNLGNAYFKLGKYDEALEYYEKALE 29
TPR_11 pfam13414
TPR repeat;
254-294 6.08e-03

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 34.75  E-value: 6.08e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1002264378 254 GNAAYKK-DFETAIQHYTKAMELDDEDVSYLTNRAAVYLEMG 294
Cdd:pfam13414   1 GDAYYEQgKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
YfgM COG2976
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal ...
 10-110 6.78e-03

Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms];


Pssm-ID: 442215 [Multi-domain]  Cd Length: 207  Bit Score: 38.30  E-value: 6.78e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378  10 NAAFSAGRFEEAAAHFTDAIALAPDN---HVLYSNRSAAYASLHRYPEALA-----DAERTVALRPDwakgcsRLGAARL 81
Cdd:COG2976    98 KAAVDAGDLDKAAAQLQWVLDNAKDPalkALARLRLARVLLAQKKYDEALAtldavKPEAFAALYAE------LRGDILL 171

                          90       100
                  ....*....|....*....|....*....
gi 1002264378  82 GLGDAAGAVAAYEKGLALEPSNGALKDGL 110
Cdd:COG2976   172 AQGDKAEARAAYQKALAALPEDAPLRQLL 200
MamA NF040959
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise ...
 8-100 7.85e-03

magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise magnetic mineral crystals in magnetotactic bacteria (MTB). Magnetosomes are important for MTB to search for preferred microaerophilic environment. Proteins of this family typically contain five tetra-trico-peptide repeat (TPR) motifs. Based on structural analyses, MamA forms a large homooligomer through self-recognition to regulate protein-protein interaction in magnetosomes.


Pssm-ID: 468889 [Multi-domain]  Cd Length: 204  Bit Score: 38.13  E-value: 7.85e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378   8 KGNAAFSAGRFEEAAAHFTDAIALAPDNHVLYSNRSAAYASLHRYPEALADAERTVALRPDWAKGCSRLGAARLGLGDAA 87
Cdd:NF040959  111 KGVALLKIKDYEKAVEDLEEALEEKPDNFNLNYRLGLALDGLGQYDKAIEAFQKALELDPNEIKYHQAIGFMYVQKGDHE 190

                          90
                  ....*....|...
gi 1002264378  88 GAVAAYEKGLALE 100
Cdd:NF040959  191 TAAEHFKKAMELE 203
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 7-123 9.42e-03

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 38.91  E-value: 9.42e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002264378    7 AKGNAAFSAGRFEEAAAHFTDAIALAPD-------NHVLYSNR--------SAAYASlHRYPEALADAERTVALRPDWAK 71
Cdd:PRK11447   308 ALGQAYSQQGDRARAVAQFEKALALDPHssnrdkwESLLKVNRywlliqqgDAALKA-NNLAQAERLYQQARQVDNTDSY 386

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1002264378   72 GCSRLGAARLGLGDAAGAVAAYEKGLALEPSNGALKDGLAHARQARRPAPAS 123
Cdd:PRK11447   387 AVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKAL 438
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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