NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1002271860|ref|XP_015640248|]
View 

B2 protein [Oryza sativa Japonica Group]

Protein Classification

DCD domain-containing protein( domain architecture ID 10654857)

DCD domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DCD smart00767
DCD is a plant specific domain in proteins involved in development and programmed cell death; ...
 179-310 1.35e-76

DCD is a plant specific domain in proteins involved in development and programmed cell death; The domain is shared by several proteins in the Arabidopsis and the rice genomes, which otherwise show a different protein architecture. Biological studies indicate a role of these proteins in phytohormone response, embryo development and programmed cell death by pathogens or ozone.


:

Pssm-ID: 214811  Cd Length: 132  Bit Score: 230.23  E-value: 1.35e-76
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002271860  179 EVLGGYIFVCNNDTMQEDLKRQLFGLPARYRDSVRAIIPGLPLFLYNYTTHQLHGVFEASSFGGSNIDPTAWEDKKckgE 258
Cdd:smart00767   1 ETLGGYIFMCNNDTKEECFRRQLFGLPRGYRDFVRNIKPGLPLFLYNYDTRKLHGIFEATSFGGLNIDPNAFEGKK---E 77

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1002271860  259 SRFPAQVRIRIRKLCKPLEEDAFR-PVLHHYDGP-KFRLELSIAETLSLLDLCE 310
Cdd:smart00767  78 SRFPAQVRFRIRKDCKPLPESEFRsAILENYDGPsKFRFELSHAQVLRLLDLFA 131
 
Name Accession Description Interval E-value
DCD smart00767
DCD is a plant specific domain in proteins involved in development and programmed cell death; ...
 179-310 1.35e-76

DCD is a plant specific domain in proteins involved in development and programmed cell death; The domain is shared by several proteins in the Arabidopsis and the rice genomes, which otherwise show a different protein architecture. Biological studies indicate a role of these proteins in phytohormone response, embryo development and programmed cell death by pathogens or ozone.


Pssm-ID: 214811  Cd Length: 132  Bit Score: 230.23  E-value: 1.35e-76
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002271860  179 EVLGGYIFVCNNDTMQEDLKRQLFGLPARYRDSVRAIIPGLPLFLYNYTTHQLHGVFEASSFGGSNIDPTAWEDKKckgE 258
Cdd:smart00767   1 ETLGGYIFMCNNDTKEECFRRQLFGLPRGYRDFVRNIKPGLPLFLYNYDTRKLHGIFEATSFGGLNIDPNAFEGKK---E 77

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1002271860  259 SRFPAQVRIRIRKLCKPLEEDAFR-PVLHHYDGP-KFRLELSIAETLSLLDLCE 310
Cdd:smart00767  78 SRFPAQVRFRIRKDCKPLPESEFRsAILENYDGPsKFRFELSHAQVLRLLDLFA 131
Dev_Cell_Death pfam10539
Development and cell death domain; The DCD domain is found in plant proteins involved in ...
 182-309 2.94e-65

Development and cell death domain; The DCD domain is found in plant proteins involved in development and cell death. The DCD domain is an approximately 130 amino acid long stretch that contains several mostly invariable motifs. These include a FGLP and a LFL motif at the N-terminus and a PAQV and a PLxE motif towards the C-terminus of the domain. The DCD domain is present in proteins with different architectures. Some of these proteins contain additional recognisable motifs, like the KELCH repeats or the ParB domain.


Pssm-ID: 463141  Cd Length: 126  Bit Score: 201.21  E-value: 2.94e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002271860 182 GGYIFVCNNDTMQEDLKRQLFGLPARYRDSVRAIIPGLPLFLYNYTTHQLHGVFEASSFGGSNIDPTAWEDKKckgeSRF 261
Cdd:pfam10539   1 GGVIFMCNGKTKPECFRYQLFGLPAGHKDFVKKIKPGLPLFLFDYDLRLLYGIFEAASDGGMNIEPYAFTSSG----GPF 76

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1002271860 262 PAQVRIRIRKLCKPLEEDAFRPVLH--HYDGPKFRLELSIAETLSLLDLC 309
Cdd:pfam10539  77 PAQVRFKIRKDCLPLPESEFKPAIKdnYYTKNKFRFELSHAQVRKLLSLF 126
 
Name Accession Description Interval E-value
DCD smart00767
DCD is a plant specific domain in proteins involved in development and programmed cell death; ...
 179-310 1.35e-76

DCD is a plant specific domain in proteins involved in development and programmed cell death; The domain is shared by several proteins in the Arabidopsis and the rice genomes, which otherwise show a different protein architecture. Biological studies indicate a role of these proteins in phytohormone response, embryo development and programmed cell death by pathogens or ozone.


Pssm-ID: 214811  Cd Length: 132  Bit Score: 230.23  E-value: 1.35e-76
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002271860  179 EVLGGYIFVCNNDTMQEDLKRQLFGLPARYRDSVRAIIPGLPLFLYNYTTHQLHGVFEASSFGGSNIDPTAWEDKKckgE 258
Cdd:smart00767   1 ETLGGYIFMCNNDTKEECFRRQLFGLPRGYRDFVRNIKPGLPLFLYNYDTRKLHGIFEATSFGGLNIDPNAFEGKK---E 77

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1002271860  259 SRFPAQVRIRIRKLCKPLEEDAFR-PVLHHYDGP-KFRLELSIAETLSLLDLCE 310
Cdd:smart00767  78 SRFPAQVRFRIRKDCKPLPESEFRsAILENYDGPsKFRFELSHAQVLRLLDLFA 131
Dev_Cell_Death pfam10539
Development and cell death domain; The DCD domain is found in plant proteins involved in ...
 182-309 2.94e-65

Development and cell death domain; The DCD domain is found in plant proteins involved in development and cell death. The DCD domain is an approximately 130 amino acid long stretch that contains several mostly invariable motifs. These include a FGLP and a LFL motif at the N-terminus and a PAQV and a PLxE motif towards the C-terminus of the domain. The DCD domain is present in proteins with different architectures. Some of these proteins contain additional recognisable motifs, like the KELCH repeats or the ParB domain.


Pssm-ID: 463141  Cd Length: 126  Bit Score: 201.21  E-value: 2.94e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002271860 182 GGYIFVCNNDTMQEDLKRQLFGLPARYRDSVRAIIPGLPLFLYNYTTHQLHGVFEASSFGGSNIDPTAWEDKKckgeSRF 261
Cdd:pfam10539   1 GGVIFMCNGKTKPECFRYQLFGLPAGHKDFVKKIKPGLPLFLFDYDLRLLYGIFEAASDGGMNIEPYAFTSSG----GPF 76

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1002271860 262 PAQVRIRIRKLCKPLEEDAFRPVLH--HYDGPKFRLELSIAETLSLLDLC 309
Cdd:pfam10539  77 PAQVRFKIRKDCLPLPESEFKPAIKdnYYTKNKFRFELSHAQVRKLLSLF 126
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH