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Conserved domains on  [gi|1002277704|ref|XP_015643194|]
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autophagy-related protein 2 [Oryza sativa Japonica Group]

Protein Classification

ATG_C domain-containing protein( domain architecture ID 10558407)

ATG_C domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ATG_C pfam09333
Autophagy-related protein C terminal domain; ATG2 (also known as Apg2) is a peripheral ...
 1819-1913 8.32e-32

Autophagy-related protein C terminal domain; ATG2 (also known as Apg2) is a peripheral membrane protein. It functions in both cytoplasm-to-vacuole targeting and in autophagy.


:

Pssm-ID: 462761 [Multi-domain]  Cd Length: 96  Bit Score: 120.30  E-value: 8.32e-32
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002277704 1819 NVRANQPESAQEGLKKAYESLTDGFGRTASALIGNPIKVYNRGaGAGSALATAICGAPGAAVAPLSASFRAAHYTLLGIR 1898
Cdd:pfam09333    2 SLYANQPEDVREGLQQAYSSLERGLGSAADAIIAVPGEVYESK-GAGGAAKAVLRAVPVAVLRPAIGATEAVSKTLLGVR 80

                           90
                   ....*....|....*
gi 1002277704 1899 NSLDPERKKESMYKY 1913
Cdd:pfam09333   81 NQLDPENRRESEDKY 95
 
Name Accession Description Interval E-value
ATG_C pfam09333
Autophagy-related protein C terminal domain; ATG2 (also known as Apg2) is a peripheral ...
 1819-1913 8.32e-32

Autophagy-related protein C terminal domain; ATG2 (also known as Apg2) is a peripheral membrane protein. It functions in both cytoplasm-to-vacuole targeting and in autophagy.


Pssm-ID: 462761 [Multi-domain]  Cd Length: 96  Bit Score: 120.30  E-value: 8.32e-32
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002277704 1819 NVRANQPESAQEGLKKAYESLTDGFGRTASALIGNPIKVYNRGaGAGSALATAICGAPGAAVAPLSASFRAAHYTLLGIR 1898
Cdd:pfam09333    2 SLYANQPEDVREGLQQAYSSLERGLGSAADAIIAVPGEVYESK-GAGGAAKAVLRAVPVAVLRPAIGATEAVSKTLLGVR 80

                           90
                   ....*....|....*
gi 1002277704 1899 NSLDPERKKESMYKY 1913
Cdd:pfam09333   81 NQLDPENRRESEDKY 95
 
Name Accession Description Interval E-value
ATG_C pfam09333
Autophagy-related protein C terminal domain; ATG2 (also known as Apg2) is a peripheral ...
 1819-1913 8.32e-32

Autophagy-related protein C terminal domain; ATG2 (also known as Apg2) is a peripheral membrane protein. It functions in both cytoplasm-to-vacuole targeting and in autophagy.


Pssm-ID: 462761 [Multi-domain]  Cd Length: 96  Bit Score: 120.30  E-value: 8.32e-32
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002277704 1819 NVRANQPESAQEGLKKAYESLTDGFGRTASALIGNPIKVYNRGaGAGSALATAICGAPGAAVAPLSASFRAAHYTLLGIR 1898
Cdd:pfam09333    2 SLYANQPEDVREGLQQAYSSLERGLGSAADAIIAVPGEVYESK-GAGGAAKAVLRAVPVAVLRPAIGATEAVSKTLLGVR 80

                           90
                   ....*....|....*
gi 1002277704 1899 NSLDPERKKESMYKY 1913
Cdd:pfam09333   81 NQLDPENRRESEDKY 95
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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