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Conserved domains on  [gi|1002279027|ref|XP_015643831|]
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diphthamide biosynthesis protein 3 [Oryza sativa Japonica Group]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zf-CSL super family cl21704
CSL zinc finger; This is a zinc binding motif which contains four cysteine residues which ...
 1-65 3.04e-26

CSL zinc finger; This is a zinc binding motif which contains four cysteine residues which chelate zinc. This domain is often found associated with a pfam00226 domain. This domain is named after the conserved motif of the final cysteine.


The actual alignment was detected with superfamily member COG5216:

Pssm-ID: 419794  Cd Length: 67  Bit Score: 91.06  E-value: 3.04e-26
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1002279027  1 MSAYDEVEIEDMEWNAELGAYTYPCPCGDLFQITLADLRLGEEIARCPSCSLFLTVVYNEEDFAD 65
Cdd:COG5216    1 MSFYDEIEIEDFTFSREEKTFTYPCPCGDRFEISLEDLRNGEVVARCPSCSLIVCVVYDAEDLEE 65
 
Name Accession Description Interval E-value
COG5216 COG5216
Uncharacterized conserved protein [Function unknown];
1-65 3.04e-26

Uncharacterized conserved protein [Function unknown];


Pssm-ID: 227541  Cd Length: 67  Bit Score: 91.06  E-value: 3.04e-26
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1002279027  1 MSAYDEVEIEDMEWNAELGAYTYPCPCGDLFQITLADLRLGEEIARCPSCSLFLTVVYNEEDFAD 65
Cdd:COG5216    1 MSFYDEIEIEDFTFSREEKTFTYPCPCGDRFEISLEDLRNGEVVARCPSCSLIVCVVYDAEDLEE 65
zf-CSL pfam05207
CSL zinc finger; This is a zinc binding motif which contains four cysteine residues which ...
 5-59 1.54e-24

CSL zinc finger; This is a zinc binding motif which contains four cysteine residues which chelate zinc. This domain is often found associated with a pfam00226 domain. This domain is named after the conserved motif of the final cysteine.


Pssm-ID: 398744  Cd Length: 55  Bit Score: 86.52  E-value: 1.54e-24
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 1002279027  5 DEVEIEDMEWNAELGAYTYPCPCGDLFQITLADLRLGEEIARCPSCSLFLTVVYN 59
Cdd:pfam05207  1 DEVELEDFEFDEEEESYYYPCRCGDEFEITEEDLEEGEVVVQCPSCSLWIKVIYD 55
 
Name Accession Description Interval E-value
COG5216 COG5216
Uncharacterized conserved protein [Function unknown];
1-65 3.04e-26

Uncharacterized conserved protein [Function unknown];


Pssm-ID: 227541  Cd Length: 67  Bit Score: 91.06  E-value: 3.04e-26
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1002279027  1 MSAYDEVEIEDMEWNAELGAYTYPCPCGDLFQITLADLRLGEEIARCPSCSLFLTVVYNEEDFAD 65
Cdd:COG5216    1 MSFYDEIEIEDFTFSREEKTFTYPCPCGDRFEISLEDLRNGEVVARCPSCSLIVCVVYDAEDLEE 65
zf-CSL pfam05207
CSL zinc finger; This is a zinc binding motif which contains four cysteine residues which ...
 5-59 1.54e-24

CSL zinc finger; This is a zinc binding motif which contains four cysteine residues which chelate zinc. This domain is often found associated with a pfam00226 domain. This domain is named after the conserved motif of the final cysteine.


Pssm-ID: 398744  Cd Length: 55  Bit Score: 86.52  E-value: 1.54e-24
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 1002279027  5 DEVEIEDMEWNAELGAYTYPCPCGDLFQITLADLRLGEEIARCPSCSLFLTVVYN 59
Cdd:pfam05207  1 DEVELEDFEFDEEEESYYYPCRCGDEFEITEEDLEEGEVVVQCPSCSLWIKVIYD 55
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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