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Conserved domains on  [gi|1002281383|ref|XP_015644989|]
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protein TsetseEP [Oryza sativa Japonica Group]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK09752 super family cl32407
AIDA-I family autotransporter YfaL;
75-106 4.32e-09

AIDA-I family autotransporter YfaL;


The actual alignment was detected with superfamily member PRK09752:

Pssm-ID: 182059 [Multi-domain]  Cd Length: 1250  Bit Score: 56.61  E-value: 4.32e-09
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1002281383   75 SPqPDPKPTPQPEPKQDPKPNPQPDPKPSPQP 106
Cdd:PRK09752   922 SP-PDPDPTPDPDPTPDPDPTPDPEPTPAYQP 952
kgd super family cl39092
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 34-114 1.59e-05

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


The actual alignment was detected with superfamily member PRK12270:

Pssm-ID: 476867 [Multi-domain]  Cd Length: 1228  Bit Score: 45.65  E-value: 1.59e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002281383   34 KSDPKPADP-------NPKPDPTPKPQPETKPSPQPNPQPNPQPDPKPSPQPDPKPTPQPEPKQDPKPNPQPDPKPSPQP 106
Cdd:PRK12270    19 LADPNSVDPswreffaDYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAA 98


                   ....*...
gi 1002281383  107 DPKPTPQP 114
Cdd:PRK12270    99 PPAAAAAA 106
PspC_subgroup_1 super family cl41462
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...
 87-167 5.64e-03

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.


The actual alignment was detected with superfamily member NF033838:

Pssm-ID: 468201 [Multi-domain]  Cd Length: 684  Bit Score: 37.69  E-value: 5.64e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002281383  87 EPKQDPKPNPQPDPKPSPQPdPKPTPQPDPKQDPQPNPQPDPKPTPQPnpkqDPQPNPQPDPKPTPQPDPKqdPQPNPQP 166
Cdd:NF033838  409 EDKVKEKPAEQPQPAPAPQP-EKPAPKPEKPAEQPKAEKPADQQAEED----YARRSEEEYNRLTQQQPPK--TEKPAQP 481


                  .
gi 1002281383 167 S 167
Cdd:NF033838  482 S 482
 
Name Accession Description Interval E-value
PRK09752 PRK09752
AIDA-I family autotransporter YfaL;
75-106 4.32e-09

AIDA-I family autotransporter YfaL;


Pssm-ID: 182059 [Multi-domain]  Cd Length: 1250  Bit Score: 56.61  E-value: 4.32e-09
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1002281383   75 SPqPDPKPTPQPEPKQDPKPNPQPDPKPSPQP 106
Cdd:PRK09752   922 SP-PDPDPTPDPDPTPDPDPTPDPEPTPAYQP 952
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 34-114 1.59e-05

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 45.65  E-value: 1.59e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002281383   34 KSDPKPADP-------NPKPDPTPKPQPETKPSPQPNPQPNPQPDPKPSPQPDPKPTPQPEPKQDPKPNPQPDPKPSPQP 106
Cdd:PRK12270    19 LADPNSVDPswreffaDYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAA 98


                   ....*...
gi 1002281383  107 DPKPTPQP 114
Cdd:PRK12270    99 PPAAAAAA 106
MSCRAMM_ClfB NF033845
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ...
 28-107 4.27e-05

MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468203 [Multi-domain]  Cd Length: 871  Bit Score: 44.17  E-value: 4.27e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002281383  28 GRVIEAKSDPKPADPNPKPDPTPKPQPEtkpspqpnpqpnpqpdpkpspqPDPKPTPQPEPKQDPKPNPQPDPKPSPQPD 107
Cdd:NF033845  532 GGSADGDSAVNPKDPTPGPPVDPEPSPE----------------------PEPEPTPDPEPSPDPDPEPSPDPDPDSDSD 589
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
 36-114 2.00e-04

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 40.16  E-value: 2.00e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1002281383  36 DPKPADPNPKPDPTPKPQPEtkpspqpnpqpnpqpdpkpsPQPDPKPTPQPEPKQDPKPNPQPDPKPSPQPDPKPTPQP 114
Cdd:pfam05887  53 DTNGTDPEPEPEPEPEPEPE--------------------PEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP 111
MSCRAMM_ClfB NF033845
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ...
 36-159 3.36e-04

MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468203 [Multi-domain]  Cd Length: 871  Bit Score: 41.47  E-value: 3.36e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002281383  36 DPKPADPNPKPDPTPKPQPEtkpspqpnpqpnpqpdPKPSPQPDPKPTPQPEPKQDPKPNPQPDPKPSPQPDPKPTPQPD 115
Cdd:NF033845  542 NPKDPTPGPPVDPEPSPEPE----------------PEPTPDPEPSPDPDPEPSPDPDPDSDSDSDSGSDSDSGSDSDSD 605

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1002281383 116 PKQDPQPNPQPDPKPTPQPNPKQDPQPNPQPDPKPTPQPDPKQD 159
Cdd:NF033845  606 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 649
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
 76-115 2.22e-03

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 37.46  E-value: 2.22e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1002281383  76 PQPDPKPTPQPEPKQDPKPNPQPDPKPSPQPDPKPTPQPD 115
Cdd:pfam05887  65 PEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPE 104
PspC_subgroup_1 NF033838
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...
 87-167 5.64e-03

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.


Pssm-ID: 468201 [Multi-domain]  Cd Length: 684  Bit Score: 37.69  E-value: 5.64e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002281383  87 EPKQDPKPNPQPDPKPSPQPdPKPTPQPDPKQDPQPNPQPDPKPTPQPnpkqDPQPNPQPDPKPTPQPDPKqdPQPNPQP 166
Cdd:NF033838  409 EDKVKEKPAEQPQPAPAPQP-EKPAPKPEKPAEQPKAEKPADQQAEED----YARRSEEEYNRLTQQQPPK--TEKPAQP 481


                  .
gi 1002281383 167 S 167
Cdd:NF033838  482 S 482
PRK09752 PRK09752
AIDA-I family autotransporter YfaL;
102-166 6.28e-03

AIDA-I family autotransporter YfaL;


Pssm-ID: 182059 [Multi-domain]  Cd Length: 1250  Bit Score: 37.73  E-value: 6.28e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1002281383  102 PSPqPDPKPTPQPDpkqdpqpnpqpdpkptpqpnpkqdpqpnpqpdpkPTPQPDPKQDPQPNP--QP 166
Cdd:PRK09752   921 PSP-PDPDPTPDPD----------------------------------PTPDPDPTPDPEPTPayQP 952
PspC_subgroup_1 NF033838
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...
 75-159 8.58e-03

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.


Pssm-ID: 468201 [Multi-domain]  Cd Length: 684  Bit Score: 37.30  E-value: 8.58e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002281383  75 SPQPDPKPTPQPEpkqdpKPNPQPdPKPSPQPDPKPTPQPdpkqDPQPNPQPDPKPTPQPNPKQDPQPNPQPDPKPTPQP 154
Cdd:NF033838  417 AEQPQPAPAPQPE-----KPAPKP-EKPAEQPKAEKPADQ----QAEEDYARRSEEEYNRLTQQQPPKTEKPAQPSTPKT 486


                  ....*
gi 1002281383 155 DPKQD 159
Cdd:NF033838  487 GWKQE 491
 
Name Accession Description Interval E-value
PRK09752 PRK09752
AIDA-I family autotransporter YfaL;
75-106 4.32e-09

AIDA-I family autotransporter YfaL;


Pssm-ID: 182059 [Multi-domain]  Cd Length: 1250  Bit Score: 56.61  E-value: 4.32e-09
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1002281383   75 SPqPDPKPTPQPEPKQDPKPNPQPDPKPSPQP 106
Cdd:PRK09752   922 SP-PDPDPTPDPDPTPDPDPTPDPEPTPAYQP 952
PRK09752 PRK09752
AIDA-I family autotransporter YfaL;
83-114 5.00e-07

AIDA-I family autotransporter YfaL;


Pssm-ID: 182059 [Multi-domain]  Cd Length: 1250  Bit Score: 50.44  E-value: 5.00e-07
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1002281383   83 TPQPEPKQDPKPNPQPDPKPSPQPDPKPTP--QP 114
Cdd:PRK09752   919 TPPSPPDPDPTPDPDPTPDPDPTPDPEPTPayQP 952
PRK09752 PRK09752
AIDA-I family autotransporter YfaL;
37-93 2.67e-06

AIDA-I family autotransporter YfaL;


Pssm-ID: 182059 [Multi-domain]  Cd Length: 1250  Bit Score: 48.13  E-value: 2.67e-06
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1002281383   37 PKPADPNPKPDPTPKPQPEtkpspqpnpqpnpqpdpkpsPQPDPKPTPQPEPKQDPK 93
Cdd:PRK09752   921 PSPPDPDPTPDPDPTPDPD--------------------PTPDPEPTPAYQPVLNAK 957
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 34-114 1.59e-05

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 45.65  E-value: 1.59e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002281383   34 KSDPKPADP-------NPKPDPTPKPQPETKPSPQPNPQPNPQPDPKPSPQPDPKPTPQPEPKQDPKPNPQPDPKPSPQP 106
Cdd:PRK12270    19 LADPNSVDPswreffaDYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAA 98


                   ....*...
gi 1002281383  107 DPKPTPQP 114
Cdd:PRK12270    99 PPAAAAAA 106
MSCRAMM_ClfB NF033845
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ...
 28-107 4.27e-05

MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468203 [Multi-domain]  Cd Length: 871  Bit Score: 44.17  E-value: 4.27e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002281383  28 GRVIEAKSDPKPADPNPKPDPTPKPQPEtkpspqpnpqpnpqpdpkpspqPDPKPTPQPEPKQDPKPNPQPDPKPSPQPD 107
Cdd:NF033845  532 GGSADGDSAVNPKDPTPGPPVDPEPSPE----------------------PEPEPTPDPEPSPDPDPEPSPDPDPDSDSD 589
PHA03247 PHA03247
large tegument protein UL36; Provisional
 35-167 7.11e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.77  E-value: 7.11e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002281383   35 SDPKPADPNPKPDPTPKPQPETKPSPQPNPQPNPQPDPKPSPQPDPKPTPQPEPKQDPKPNPQPDPKPSPQPDPKPTPQP 114
Cdd:PHA03247  2868 SRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTT 2947

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1002281383  115 DpkqdpQPNPQPDPKPTPQPNPKQDPQPNPQPDPKPTPQPDPkqdPQPNPQPS 167
Cdd:PHA03247  2948 D-----PAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAP---SREAPASS 2992
PRK09752 PRK09752
AIDA-I family autotransporter YfaL;
39-97 1.52e-04

AIDA-I family autotransporter YfaL;


Pssm-ID: 182059 [Multi-domain]  Cd Length: 1250  Bit Score: 42.74  E-value: 1.52e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1002281383   39 PADPnPKPDPTPKPQPetkpspqpnpqpnpqpdpkpSPQPDPKPTPQPEPKQDPKPNPQ 97
Cdd:PRK09752   920 PPSP-PDPDPTPDPDP--------------------TPDPDPTPDPEPTPAYQPVLNAK 957
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
 36-114 2.00e-04

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 40.16  E-value: 2.00e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1002281383  36 DPKPADPNPKPDPTPKPQPEtkpspqpnpqpnpqpdpkpsPQPDPKPTPQPEPKQDPKPNPQPDPKPSPQPDPKPTPQP 114
Cdd:pfam05887  53 DTNGTDPEPEPEPEPEPEPE--------------------PEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP 111
PRK14960 PRK14960
DNA polymerase III subunit gamma/tau;
76-107 3.23e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237868 [Multi-domain]  Cd Length: 702  Bit Score: 41.57  E-value: 3.23e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1002281383  76 PQPDPKPTPQPEPKQDPKPNPQPDPKPSPQPD 107
Cdd:PRK14960  416 PEPEPEPEPEPEPEPEPEPEPEPEPEPQPNQD 447
MSCRAMM_ClfB NF033845
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ...
 36-159 3.36e-04

MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468203 [Multi-domain]  Cd Length: 871  Bit Score: 41.47  E-value: 3.36e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002281383  36 DPKPADPNPKPDPTPKPQPEtkpspqpnpqpnpqpdPKPSPQPDPKPTPQPEPKQDPKPNPQPDPKPSPQPDPKPTPQPD 115
Cdd:NF033845  542 NPKDPTPGPPVDPEPSPEPE----------------PEPTPDPEPSPDPDPEPSPDPDPDSDSDSDSGSDSDSGSDSDSD 605

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1002281383 116 PKQDPQPNPQPDPKPTPQPNPKQDPQPNPQPDPKPTPQPDPKQD 159
Cdd:NF033845  606 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 649
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 32-112 5.71e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 41.03  E-value: 5.71e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002281383   32 EAKSDPKPADPNPKPDPTPKPQPETKPSPQPNPQPNPQPDPKPSPQPDPKPTPQPEPKQDPKPNPQPDPKPSPQPDPKPT 111
Cdd:PRK12270    34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAV 113


                   .
gi 1002281383  112 P 112
Cdd:PRK12270   114 E 114
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 35-115 6.30e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 40.64  E-value: 6.30e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002281383   35 SDPKPADPNPKPDPTPKPQPETKPSPQPNPQPNPQPDPKPSP-QPDPKPTPQPEPKQDPKPNPQPDPKPSPQPDPKPTPQ 113
Cdd:PRK12270    34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPaAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAV 113


                   ..
gi 1002281383  114 PD 115
Cdd:PRK12270   114 ED 115
PHA03247 PHA03247
large tegument protein UL36; Provisional
 37-167 7.13e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 40.69  E-value: 7.13e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002281383   37 PKPADPNPKPDPTPKPQPETKPSPQPNPQPNPQPDPKPSPQPDPKPTPQPEPKQDPKPNPQPDPKPSPQPDPKPTPQPDP 116
Cdd:PHA03247  2834 AQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQA 2913

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1002281383  117 KQDPQPNPQPDPKPTPQPnpkqdpqpNPQPDPKPTPQPDPKQDPQPNPQPS 167
Cdd:PHA03247  2914 PPPPQPQPQPPPPPQPQP--------PPPPPPRPQPPLAPTTDPAGAGEPS 2956
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 30-104 1.87e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 39.02  E-value: 1.87e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1002281383  30 VIEAKSDPKPA-DPNPKPDPTPKPQPETKPSPQPNPQPNPQPDPKPSPQPD--PKPTPQPEPKQDPKPNPQPDPKPSP 104
Cdd:PRK14950  355 VIEALLVPVPApQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVREtaTPPPVPPRPVAPPVPHTPESAPKLT 432
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
 76-115 2.22e-03

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 37.46  E-value: 2.22e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1002281383  76 PQPDPKPTPQPEPKQDPKPNPQPDPKPSPQPDPKPTPQPD 115
Cdd:pfam05887  65 PEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPE 104
PHA03269 PHA03269
envelope glycoprotein C; Provisional
 48-114 2.42e-03

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 38.94  E-value: 2.42e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1002281383  48 PTPKPQPETKPSPQPNPQPNPQPDPKPSPQPDPKPTPQPEPKQDPKPNP------QPDPKPSPQPDPKPTPQP 114
Cdd:PHA03269   40 PDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDPAPAPhqaasrAPDPAVAPQLAAAPKPDA 112
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
 76-115 2.82e-03

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 37.08  E-value: 2.82e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1002281383  76 PQPDPKPTPQPEPKQDPKPNPQPDPKPSPQPDPKPTPQPD 115
Cdd:pfam05887  61 PEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPE 100
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
 76-115 2.96e-03

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 37.08  E-value: 2.96e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1002281383  76 PQPDPKPTPQPEPKQDPKPNPQPDPKPSPQPDPKPTPQPD 115
Cdd:pfam05887  63 PEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPE 102
PRK11633 PRK11633
cell division protein DedD; Provisional
 48-113 5.09e-03

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 37.29  E-value: 5.09e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1002281383  48 PTPKPQPETKPSPQPNPQPNPQPDPKPSPQPDPKPTPQPEPKQDPKPNPQPDPKPSPQPDPKPTPQ 113
Cdd:PRK11633   81 AAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPPAPKPEPKPVVEEKAAPT 146
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
 76-115 5.21e-03

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 36.31  E-value: 5.21e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1002281383  76 PQPDPKPTPQPEPKQDPKPNPQPDPKPSPQPDPKPTPQPD 115
Cdd:pfam05887  59 PEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPE 98
PspC_subgroup_1 NF033838
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...
 87-167 5.64e-03

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.


Pssm-ID: 468201 [Multi-domain]  Cd Length: 684  Bit Score: 37.69  E-value: 5.64e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002281383  87 EPKQDPKPNPQPDPKPSPQPdPKPTPQPDPKQDPQPNPQPDPKPTPQPnpkqDPQPNPQPDPKPTPQPDPKqdPQPNPQP 166
Cdd:NF033838  409 EDKVKEKPAEQPQPAPAPQP-EKPAPKPEKPAEQPKAEKPADQQAEED----YARRSEEEYNRLTQQQPPK--TEKPAQP 481


                  .
gi 1002281383 167 S 167
Cdd:NF033838  482 S 482
PRK09752 PRK09752
AIDA-I family autotransporter YfaL;
102-166 6.28e-03

AIDA-I family autotransporter YfaL;


Pssm-ID: 182059 [Multi-domain]  Cd Length: 1250  Bit Score: 37.73  E-value: 6.28e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1002281383  102 PSPqPDPKPTPQPDpkqdpqpnpqpdpkptpqpnpkqdpqpnpqpdpkPTPQPDPKQDPQPNP--QP 166
Cdd:PRK09752   921 PSP-PDPDPTPDPD----------------------------------PTPDPDPTPDPEPTPayQP 952
PspC_subgroup_1 NF033838
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...
 75-159 8.58e-03

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.


Pssm-ID: 468201 [Multi-domain]  Cd Length: 684  Bit Score: 37.30  E-value: 8.58e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002281383  75 SPQPDPKPTPQPEpkqdpKPNPQPdPKPSPQPDPKPTPQPdpkqDPQPNPQPDPKPTPQPNPKQDPQPNPQPDPKPTPQP 154
Cdd:NF033838  417 AEQPQPAPAPQPE-----KPAPKP-EKPAEQPKAEKPADQ----QAEEDYARRSEEEYNRLTQQQPPKTEKPAQPSTPKT 486


                  ....*
gi 1002281383 155 DPKQD 159
Cdd:NF033838  487 GWKQE 491
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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