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Conserved domains on  [gi|1002281403|ref|XP_015645000|]
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uncharacterized protein LOC4343020 [Oryza sativa Japonica Group]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_L23 super family cl46680
Ribosomal protein L23;
30-91 1.73e-13

Ribosomal protein L23;


The actual alignment was detected with superfamily member pfam00276:

Pssm-ID: 459743  Cd Length: 86  Bit Score: 63.61  E-value: 1.73e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1002281403  30 QEFAVKTVPSASKVDIRRCLESMYGFSVAEVRTLNMEGKKLRRGPFLAAKPDYKKAYVTLRA 91
Cdd:pfam00276  20 NKYTFEVDPDANKTEIKKAVEKLFGVKVEKVNTLNVKGKVKRFGRFVGRRSDWKKAIVTLAE 81
 
Name Accession Description Interval E-value
Ribosomal_L23 pfam00276
Ribosomal protein L23;
30-91 1.73e-13

Ribosomal protein L23;


Pssm-ID: 459743  Cd Length: 86  Bit Score: 63.61  E-value: 1.73e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1002281403  30 QEFAVKTVPSASKVDIRRCLESMYGFSVAEVRTLNMEGKKLRRGPFLAAKPDYKKAYVTLRA 91
Cdd:pfam00276  20 NKYTFEVDPDANKTEIKKAVEKLFGVKVEKVNTLNVKGKVKRFGRFVGRRSDWKKAIVTLAE 81
RplW COG0089
Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L23 ...
 32-91 1.08e-11

Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L23 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 439859  Cd Length: 88  Bit Score: 58.93  E-value: 1.08e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002281403  32 FAVKTVPSASKVDIRRCLESMYGFSVAEVRTLNMEGKKLRRGPFLAAKPDYKKAYVTLRA 91
Cdd:COG0089    19 YTFEVAPDANKTEIKKAVEKLFGVKVEKVNTLNVKGKKKRFGRRVGKRSDWKKAIVTLAE 78
rplW PRK05738
50S ribosomal protein L23; Reviewed
 32-91 1.49e-11

50S ribosomal protein L23; Reviewed


Pssm-ID: 235586  Cd Length: 92  Bit Score: 58.56  E-value: 1.49e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002281403  32 FAVKTVPSASKVDIRRCLESMYGFSVAEVRTLNMEGKKLRRGPFLAAKPDYKKAYVTLRA 91
Cdd:PRK05738   23 YVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGKTKRFGRRIGKRSDWKKAIVTLAE 82
 
Name Accession Description Interval E-value
Ribosomal_L23 pfam00276
Ribosomal protein L23;
30-91 1.73e-13

Ribosomal protein L23;


Pssm-ID: 459743  Cd Length: 86  Bit Score: 63.61  E-value: 1.73e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1002281403  30 QEFAVKTVPSASKVDIRRCLESMYGFSVAEVRTLNMEGKKLRRGPFLAAKPDYKKAYVTLRA 91
Cdd:pfam00276  20 NKYTFEVDPDANKTEIKKAVEKLFGVKVEKVNTLNVKGKVKRFGRFVGRRSDWKKAIVTLAE 81
RplW COG0089
Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L23 ...
 32-91 1.08e-11

Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L23 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 439859  Cd Length: 88  Bit Score: 58.93  E-value: 1.08e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002281403  32 FAVKTVPSASKVDIRRCLESMYGFSVAEVRTLNMEGKKLRRGPFLAAKPDYKKAYVTLRA 91
Cdd:COG0089    19 YTFEVAPDANKTEIKKAVEKLFGVKVEKVNTLNVKGKKKRFGRRVGKRSDWKKAIVTLAE 78
rplW PRK05738
50S ribosomal protein L23; Reviewed
 32-91 1.49e-11

50S ribosomal protein L23; Reviewed


Pssm-ID: 235586  Cd Length: 92  Bit Score: 58.56  E-value: 1.49e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002281403  32 FAVKTVPSASKVDIRRCLESMYGFSVAEVRTLNMEGKKLRRGPFLAAKPDYKKAYVTLRA 91
Cdd:PRK05738   23 YVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGKTKRFGRRIGKRSDWKKAIVTLAE 82
PRK14548 PRK14548
50S ribosomal protein L23P; Provisional
 32-89 5.59e-05

50S ribosomal protein L23P; Provisional


Pssm-ID: 237750  Cd Length: 84  Bit Score: 40.61  E-value: 5.59e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1002281403  32 FAVKTvpSASKVDIRRCLESMYGFSVAEVRTL-NMEGKklrrgpflaakpdyKKAYVTL 89
Cdd:PRK14548   26 FIVDR--RATKPDIKRAVEELFDVKVEKVNTLiTPKGE--------------KKAYVKL 68
rpl23 CHL00030
ribosomal protein L23
 40-89 8.22e-05

ribosomal protein L23


Pssm-ID: 176971  Cd Length: 93  Bit Score: 40.29  E-value: 8.22e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1002281403  40 ASKVDIRRCLESMYGFSVAEVRTLNMEGKKLRRGPFLAAKPDYKKAYVTL 89
Cdd:CHL00030   30 STKTEIKHWIELFFGVKVIAVNSHRLPRKKRRMGPIMGHKMHYKRMIITL 79
rplW PRK12280
50S ribosomal protein L23; Reviewed
 32-91 6.73e-03

50S ribosomal protein L23; Reviewed


Pssm-ID: 237035 [Multi-domain]  Cd Length: 158  Bit Score: 35.89  E-value: 6.73e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002281403  32 FAVKtvPSASKVDIRRCLESMYGFSVAEVRTLNMEGKKLRRGPFLAAKPDYKKAYVTLRA 91
Cdd:PRK12280   27 FKVD--RRANKIEIKKAVEFIFKVKVLKVNIFNVDKKPKRLGRFPGFTNSYKKAYVTLAE 84
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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