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Conserved domains on  [gi|1002286447|ref|XP_015647528|]
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pentatricopeptide repeat-containing protein At4g20740 [Oryza sativa Japonica Group]

Protein Classification

pentatricopeptide repeat-containing protein( domain architecture ID 1000279)

pentatricopeptide repeat (PPR)-containing protein may form anti-parallel alpha helices and bind single-stranded RNA in a sequence-specific and modular manner; similar to Arabidopsis pentatricopeptide repeat proteins that play constitutive, often essential roles in mitochondria and chloroplasts, probably via binding to organellar transcripts

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03218 super family cl33664
maturation of RBCL 1; Provisional
 239-471 2.61e-15

maturation of RBCL 1; Provisional


The actual alignment was detected with superfamily member PLN03218:

Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 80.31  E-value: 2.61e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002286447  239 ALAAAGHVDDTLKLFDEMSHCSVRPMPVTFAIMVRALARAGMTDKLLEMIGRMRAEVCRPDVFVYTALVKTMVRWGHMEG 318
Cdd:PLN03218   481 TCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDR 560

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002286447  319 CIRVWEEIRRDH--VDPDTMAYTTMIAGLCNAGMVEKAEE-----------------------------------LFGEM 361
Cdd:PLN03218   561 AFDVLAEMKAEThpIDPDHITVGALMKACANAGQVDRAKEvyqmiheynikgtpevytiavnscsqkgdwdfalsIYDDM 640

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002286447  362 RRKGLLVDRMVYASLIDGYVSTGRVSDGCRVLKEMVDAGYRADLGIYNTLIGGLCEIEREDKAHKMFQIVVQEDLIPSSE 441
Cdd:PLN03218   641 KKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVS 720

                          250       260       270
                   ....*....|....*....|....*....|
gi 1002286447  442 TVSPLLARYADKGEMVKFFGLVDKLVELSL 471
Cdd:PLN03218   721 TMNALITALCEGNQLPKALEVLSEMKRLGL 750
PPR_2 super family cl38385
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 508-555 6.20e-07

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


The actual alignment was detected with superfamily member pfam13041:

Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 46.59  E-value: 6.20e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1002286447 508 SVGIYNILIENLLKIKERKKALVLFEEMQSSdDCKPDSCTYSHMIPCF 555
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKR-GVKPNVYTYTILINGL 48
PPR_2 super family cl38385
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 543-592 1.00e-06

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


The actual alignment was detected with superfamily member pfam13041:

Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 45.82  E-value: 1.00e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1002286447 543 PDSCTYSHMIPCFVDEGNIEEACSCYNLMMKAVWIPSISAYCALVKGLCK 592
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
 
Name Accession Description Interval E-value
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 239-471 2.61e-15

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 80.31  E-value: 2.61e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002286447  239 ALAAAGHVDDTLKLFDEMSHCSVRPMPVTFAIMVRALARAGMTDKLLEMIGRMRAEVCRPDVFVYTALVKTMVRWGHMEG 318
Cdd:PLN03218   481 TCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDR 560

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002286447  319 CIRVWEEIRRDH--VDPDTMAYTTMIAGLCNAGMVEKAEE-----------------------------------LFGEM 361
Cdd:PLN03218   561 AFDVLAEMKAEThpIDPDHITVGALMKACANAGQVDRAKEvyqmiheynikgtpevytiavnscsqkgdwdfalsIYDDM 640

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002286447  362 RRKGLLVDRMVYASLIDGYVSTGRVSDGCRVLKEMVDAGYRADLGIYNTLIGGLCEIEREDKAHKMFQIVVQEDLIPSSE 441
Cdd:PLN03218   641 KKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVS 720

                          250       260       270
                   ....*....|....*....|....*....|
gi 1002286447  442 TVSPLLARYADKGEMVKFFGLVDKLVELSL 471
Cdd:PLN03218   721 TMNALITALCEGNQLPKALEVLSEMKRLGL 750
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 333-380 5.23e-11

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 58.14  E-value: 5.23e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1002286447 333 PDTMAYTTMIAGLCNAGMVEKAEELFGEMRRKGLLVDRMVYASLIDGY 380
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 336-369 1.67e-07

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 47.84  E-value: 1.67e-07
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1002286447 336 MAYTTMIAGLCNAGMVEKAEELFGEMRRKGLLVD 369
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 508-555 6.20e-07

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 46.59  E-value: 6.20e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1002286447 508 SVGIYNILIENLLKIKERKKALVLFEEMQSSdDCKPDSCTYSHMIPCF 555
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKR-GVKPNVYTYTILINGL 48
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 543-592 1.00e-06

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 45.82  E-value: 1.00e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1002286447 543 PDSCTYSHMIPCFVDEGNIEEACSCYNLMMKAVWIPSISAYCALVKGLCK 592
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 546-580 2.60e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 35.89  E-value: 2.60e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1002286447 546 CTYSHMIPCFVDEGNIEEACSCYNLMMKAVWIPSI 580
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 511-545 4.64e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 35.12  E-value: 4.64e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1002286447 511 IYNILIENLLKIKERKKALVLFEEMQSSdDCKPDS 545
Cdd:TIGR00756   2 TYNTLIDGLCKAGRVEEALELFKEMKER-GIEPDV 35
 
Name Accession Description Interval E-value
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 239-471 2.61e-15

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 80.31  E-value: 2.61e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002286447  239 ALAAAGHVDDTLKLFDEMSHCSVRPMPVTFAIMVRALARAGMTDKLLEMIGRMRAEVCRPDVFVYTALVKTMVRWGHMEG 318
Cdd:PLN03218   481 TCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDR 560

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002286447  319 CIRVWEEIRRDH--VDPDTMAYTTMIAGLCNAGMVEKAEE-----------------------------------LFGEM 361
Cdd:PLN03218   561 AFDVLAEMKAEThpIDPDHITVGALMKACANAGQVDRAKEvyqmiheynikgtpevytiavnscsqkgdwdfalsIYDDM 640

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002286447  362 RRKGLLVDRMVYASLIDGYVSTGRVSDGCRVLKEMVDAGYRADLGIYNTLIGGLCEIEREDKAHKMFQIVVQEDLIPSSE 441
Cdd:PLN03218   641 KKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVS 720

                          250       260       270
                   ....*....|....*....|....*....|
gi 1002286447  442 TVSPLLARYADKGEMVKFFGLVDKLVELSL 471
Cdd:PLN03218   721 TMNALITALCEGNQLPKALEVLSEMKRLGL 750
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 167-447 8.08e-15

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 78.77  E-value: 8.08e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002286447  167 SLLSAAGLPAAADQLPDL---MRAHGKPV--SHSQLNLLVRLHTGARRPLRALHALRRFrHEFSVQ--PE-----VHACN 234
Cdd:PLN03218   547 ALISACGQSGAVDRAFDVlaeMKAETHPIdpDHITVGALMKACANAGQVDRAKEVYQMI-HEYNIKgtPEvytiaVNSCS 625

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002286447  235 RvlgalaaAGHVDDTLKLFDEMSHCSVRPMPVTFAIMVRALARAGMTDKLLEMIGRMRAEVCRPDVFVYTALVKTMVRWG 314
Cdd:PLN03218   626 Q-------KGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAK 698

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002286447  315 HMEGCIRVWEEIRRDHVDPDTMAYTTMIAGLCNAGMVEKAEELFGEMRRKGLLVDRMVYASLIDGYVSTGRVSDGCRVLK 394
Cdd:PLN03218   699 NWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLS 778

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1002286447  395 EMVDAGYRADLGIYNTLIgGLCeIEREDKAHKMFQIVVQED-------------------------LIPSSETVSPLL 447
Cdd:PLN03218   779 QAKEDGIKPNLVMCRCIT-GLC-LRRFEKACALGEPVVSFDsgrpqienkwtswalmvyretisagTLPTMEVLSQVL 854
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 221-602 2.12e-11

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 67.59  E-value: 2.12e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002286447  221 RHEFSVQPEVHACNRVLgalaAAGHVDDTLKLFDEMSH------------------------------CSVRPMPV--TF 268
Cdd:PLN03218   365 SGKRKSPEYIDAYNRLL----RDGRIKDCIDLLEDMEKrglldmdkiyhakffkackkqravkeafrfAKLIRNPTlsTF 440

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002286447  269 AIMVRALARAGMTDKLLEMIGRMRAEVCRPDVFVYTALVKTMVRWGHMEGCIRVWEEIRRDHVDPDTMAYTTMIAGLCNA 348
Cdd:PLN03218   441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002286447  349 GMVEKAEELFGEMRRKGLLVDRMVYASLIDGYVSTGRVSDGCRVLKEM------VDagyrADLGIYNTLIGGLCEIERED 422
Cdd:PLN03218   521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMkaethpID----PDHITVGALMKACANAGQVD 596

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002286447  423 KAHKMFQIVVQEDLIPSSETVSPLLARYADKGEMVKFFGLVDKLVELSLPIVEILVDFLKLFACKSGNELKAVEVFNAFR 502
Cdd:PLN03218   597 RAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDAR 676

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002286447  503 RRGhYSVGI--YNILIENLLKIKERKKALVLFEEMQSSdDCKPDSCTYSHMIPCFVDEGNIEEACSCYNLMMKAVWIPSI 580
Cdd:PLN03218   677 KQG-IKLGTvsYSSLMGACSNAKNWKKALELYEDIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT 754

                          410       420
                   ....*....|....*....|..
gi 1002286447  581 SAYCALVKGLCKKGEINAAISL 602
Cdd:PLN03218   755 ITYSILLVASERKDDADVGLDL 776
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 333-380 5.23e-11

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 58.14  E-value: 5.23e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1002286447 333 PDTMAYTTMIAGLCNAGMVEKAEELFGEMRRKGLLVDRMVYASLIDGY 380
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 234-587 6.09e-11

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 65.66  E-value: 6.09e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002286447 234 NRVLGALAAAGHVDDTLKLFDEMSHCSVRPMPVTFAIMVRALARAGmtdklLEMIGR------MRAEVCRpDVFVYTALV 307
Cdd:PLN03081  193 GTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG-----SARAGQqlhccvLKTGVVG-DTFVSCALI 266

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002286447 308 KTMVRWGHMEGCIRVWEEIRRDhvdpDTMAYTTMIAGLCNAGMVEKAEELFGEMRRKGLLVDRMVYASLIDGYVSTGRVS 387
Cdd:PLN03081  267 DMYSKCGDIEDARCVFDGMPEK----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLE 342

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002286447 388 DGCRVLKEMVDAGYRADLGIYNTLIGGLCEIEREDKAHKMFQIVVQEDLIpsseTVSPLLARYADKGEMVKFFGLVDKLv 467
Cdd:PLN03081  343 HAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLI----SWNALIAGYGNHGRGTKAVEMFERM- 417

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002286447 468 eLSLPIVEILVDFLK-LFACKsgnelkavevFNAFRRRGhysvgiynilienllkiKErkkalvLFEEMQSSDDCKPDSC 546
Cdd:PLN03081  418 -IAEGVAPNHVTFLAvLSACR----------YSGLSEQG-----------------WE------IFQSMSENHRIKPRAM 463

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 1002286447 547 TYSHMIPCFVDEGNIEEAcscYNLMMKAVWIPSISAYCALV 587
Cdd:PLN03081  464 HYACMIELLGREGLLDEA---YAMIRRAPFKPTVNMWAALL 501
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 335-682 1.10e-09

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 61.82  E-value: 1.10e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002286447  335 TMAYTTMIAGLC-NAGMVEKAEELFGEMRRKGLLVDRMVYASLIDGYVSTGRVSDGCRVLKEMVDAGYRADLGIYNTLIG 413
Cdd:PLN03218   436 TLSTFNMLMSVCaSSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALID 515

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002286447  414 GLCEIEREDKAHKMFQIVVQEDLIPSSETVSPLLARYADKGEMVKFFglvDKLVELSLPIVEILVDFLKLFA-----CKS 488
Cdd:PLN03218   516 GCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAF---DVLAEMKAETHPIDPDHITVGAlmkacANA 592

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002286447  489 GNELKAVEVFNAFRR---RGhySVGIYNILIENLLKIKERKKALVLFEEMqSSDDCKPDSCTYSHMIPCFVDEGNIEEAC 565
Cdd:PLN03218   593 GQVDRAKEVYQMIHEyniKG--TPEVYTIAVNSCSQKGDWDFALSIYDDM-KKKGVKPDEVFFSALVDVAGHAGDLDKAF 669

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002286447  566 SCYNLMMKAVWIPSISAYCALVKGLCKKGEINAAISLVKDClgnvenGPMEFKYTLTILEA-----CQSKSPEKVIKVVD 640
Cdd:PLN03218   670 EILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI------KSIKLRPTVSTMNAlitalCEGNQLPKALEVLS 743

                          330       340       350       360
                   ....*....|....*....|....*....|....*....|..
gi 1002286447  641 EMIELGYSIEEIIYSAIIYGFCKYASSTEARKVLSTMRDRNI 682
Cdd:PLN03218   744 EMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGI 785
PLN03077 PLN03077
Protein ECB2; Provisional
 224-548 2.83e-09

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 60.63  E-value: 2.83e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002286447 224 FSVQPE--VHACNRVLGALAAAGHVDDTLKLFDEMSHCSVRPMPVTFAIMVRALAraGMTDklLEMIGRMRAEVCR---- 297
Cdd:PLN03077  144 FGKMPErdLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCG--GIPD--LARGREVHAHVVRfgfe 219

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002286447 298 PDVFVYTALVKTMVR---------------------W-----GHMEG--C---IRVWEEIRRDHVDPDTMAYTTMIAGLC 346
Cdd:PLN03077  220 LDVDVVNALITMYVKcgdvvsarlvfdrmprrdcisWnamisGYFENgeClegLELFFTMRELSVDPDLMTITSVISACE 299

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002286447 347 NAGMVEKAEELFGEMRRKGLLVDRMVYASLIDGYVSTGRVSDGCRVLKEMvdagYRADLGIYNTLIGGLCEIEREDKAHK 426
Cdd:PLN03077  300 LLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM----ETKDAVSWTAMISGYEKNGLPDKALE 375

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002286447 427 MFQIVVQEDLIPSSETVSPLLARYADKGEM---VKFFGLVDKLVELSLPIVEilVDFLKLFAcKSGNELKAVEVFNAFRR 503
Cdd:PLN03077  376 TYALMEQDNVSPDEITIASVLSACACLGDLdvgVKLHELAERKGLISYVVVA--NALIEMYS-KCKCIDKALEVFHNIPE 452

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*.
gi 1002286447 504 RGHYSvgiYNILIeNLLKIKERK-KALVLFEEMQSsdDCKPDSCTY 548
Cdd:PLN03077  453 KDVIS---WTSII-AGLRLNNRCfEALIFFRQMLL--TLKPNSVTL 492
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 329-362 1.76e-08

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 50.42  E-value: 1.76e-08
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1002286447 329 DHVDPDTMAYTTMIAGLCNAGMVEKAEELFGEMR 362
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 298-347 1.10e-07

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 48.51  E-value: 1.10e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1002286447 298 PDVFVYTALVKTMVRWGHMEGCIRVWEEIRRDHVDPDTMAYTTMIAGLCN 347
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 337-366 1.35e-07

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 47.85  E-value: 1.35e-07
                          10        20        30
                  ....*....|....*....|....*....|
gi 1002286447 337 AYTTMIAGLCNAGMVEKAEELFGEMRRKGL 366
Cdd:pfam01535   2 TYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 336-369 1.67e-07

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 47.84  E-value: 1.67e-07
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1002286447 336 MAYTTMIAGLCNAGMVEKAEELFGEMRRKGLLVD 369
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 228-277 4.44e-07

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 46.97  E-value: 4.44e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1002286447 228 PEVHACNRVLGALAAAGHVDDTLKLFDEMSHCSVRPMPVTFAIMVRALAR 277
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 508-555 6.20e-07

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 46.59  E-value: 6.20e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1002286447 508 SVGIYNILIENLLKIKERKKALVLFEEMQSSdDCKPDSCTYSHMIPCF 555
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKR-GVKPNVYTYTILINGL 48
PLN03077 PLN03077
Protein ECB2; Provisional
 250-604 8.06e-07

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 52.54  E-value: 8.06e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002286447 250 LKLFDEMSHCSVRPMPVTFAIMVRALARAGMTDKLLEMIGRMRAEVCRPDVFVYTALVKTMVRWGHMEGCIRVWEEIRRD 329
Cdd:PLN03077  273 LELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK 352

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002286447 330 hvdpDTMAYTTMIAGLCNAGMVEKAEELFGEMRRKGLLVDRMVYASLIDGYVSTGRVSDGCRVLKEMVDAGYRADLGIYN 409
Cdd:PLN03077  353 ----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVAN 428

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002286447 410 TLIGGLCEIEREDKAHKMFQIVVQEDLIPSSETVSPLLARYADKGEMVKFFGLVDKLVELSLPIVEILVDFLKLFACKSG 489
Cdd:PLN03077  429 ALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCG 508

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002286447 490 NELKA--------VEVF--NA----FRRRGHYS------------VGIYNILIENLLKIKERKKALVLFEEMQSSDDCkP 543
Cdd:PLN03077  509 KEIHAhvlrtgigFDGFlpNAlldlYVRCGRMNyawnqfnshekdVVSWNILLTGYVAHGKGSMAVELFNRMVESGVN-P 587

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1002286447 544 DSCTYSHMIPCFVDEGNIEEACSCYNLMMKAVWI-PSISAYCALVKGLCKKGEINAAISLVK 604
Cdd:PLN03077  588 DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSItPNLKHYACVVDLLGRAGKLTEAYNFIN 649
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 543-592 1.00e-06

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 45.82  E-value: 1.00e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1002286447 543 PDSCTYSHMIPCFVDEGNIEEACSCYNLMMKAVWIPSISAYCALVKGLCK 592
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PLN03077 PLN03077
Protein ECB2; Provisional
 223-406 1.59e-05

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 48.31  E-value: 1.59e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002286447 223 EFSVQP-EVHACNRVLGALAAAGHVDDTLKLFDEMSHCSVRPMPVTFAIMVRALARAGMTDKLLEMIGRMRAEV-CRPDV 300
Cdd:PLN03077  546 QFNSHEkDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYsITPNL 625

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002286447 301 FVYTALVKTMVRWGHMEgciRVWEEIRRDHVDPDTMAYttmiAGLCNAGMVEKAEELfGEMRRKGLLV----DRMVYASL 376
Cdd:PLN03077  626 KHYACVVDLLGRAGKLT---EAYNFINKMPITPDPAVW----GALLNACRIHRHVEL-GELAAQHIFEldpnSVGYYILL 697

                         170       180       190
                  ....*....|....*....|....*....|
gi 1002286447 377 IDGYVSTGRVSDGCRVLKEMVDAGYRADLG 406
Cdd:PLN03077  698 CNLYADAGKWDEVARVRKTMRENGLTVDPG 727
PLN03077 PLN03077
Protein ECB2; Provisional
 182-670 3.12e-05

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 47.54  E-value: 3.12e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002286447 182 PDLMRAH-GKPV-----SHSQLNLLVRLHTGARRPLRALHALRrfrhefSVQPEVHACNRVLGALAAAGHVDDTLKLFDE 255
Cdd:PLN03077    3 PPHFYLNpGKPNlfqlaSHKAPNVLPYWNFHGRKRSRGLSVAA------SSSSSTHDSNSQLRALCSHGQLEQALKLLES 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002286447 256 MSHCSVRPMPVTFAIMVRALARAGMTDKLLEMIGRMRAEVCRPDVFVYTALVKTMVRWGHMEGCIRVWEEIRrdhvDPDT 335
Cdd:PLN03077   77 MQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMP----ERDL 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002286447 336 MAYTTMIAGLCNAGMVEKAEELFGEMRRKGLLVDRMVYASLIDgyvSTGRVSD---GCRVLKEMVDAGYRADLGIYNTLI 412
Cdd:PLN03077  153 FSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLR---TCGGIPDlarGREVHAHVVRFGFELDVDVVNALI 229

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002286447 413 GGLCEIEREDKAHKMFqivvqeDLIPSSETVS--PLLARYADKGEMVKFFGLVDKLVELslpivEILVDFLKLFACKSGN 490
Cdd:PLN03077  230 TMYVKCGDVVSARLVF------DRMPRRDCISwnAMISGYFENGECLEGLELFFTMREL-----SVDPDLMTITSVISAC 298

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002286447 491 ELKAVEVFN------AFRRRGHYSVGIYNILIENLLKIKERKKALVLFEEMqssdDCKpDSCTYSHMIPCFVDEGNIEEA 564
Cdd:PLN03077  299 ELLGDERLGremhgyVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM----ETK-DAVSWTAMISGYEKNGLPDKA 373

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002286447 565 CSCYNLMMK------AVWIPSISAYCALVkglckkGEINAAISLVKDClgnVENGPMEFKYTLTILEACQSKSpekviKV 638
Cdd:PLN03077  374 LETYALMEQdnvspdEITIASVLSACACL------GDLDVGVKLHELA---ERKGLISYVVVANALIEMYSKC-----KC 439

                         490       500       510
                  ....*....|....*....|....*....|....*
gi 1002286447 639 VDEMIELGYSIEE---IIYSAIIYGFCKYASSTEA 670
Cdd:PLN03077  440 IDKALEVFHNIPEkdvISWTSIIAGLRLNNRCFEA 474
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 373-416 5.19e-05

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 41.19  E-value: 5.19e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1002286447 373 YASLIDGYVSTGRVSDGCRVLKEMVDAGYRADLGIYNTLIGGLC 416
Cdd:pfam13041   6 YNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLC 49
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 221-428 8.56e-05

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 46.02  E-value: 8.56e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002286447 221 RHEFSVQP--EVHACNRVLGALAAAGHVDDTLKLFDEMSHCSVRPMPVTFAIMVRALARAGMTDKLLEMIGRM-RAEVCR 297
Cdd:PLN03081  380 RNVFDRMPrkNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMsENHRIK 459

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002286447 298 PDVFVYTALVKTMVRWGHMEGCIRVweeIRRDHVDPDtmayTTMIAGLCNAGMVEK--------AEELFGeMRRKGLlvd 369
Cdd:PLN03081  460 PRAMHYACMIELLGREGLLDEAYAM---IRRAPFKPT----VNMWAALLTACRIHKnlelgrlaAEKLYG-MGPEKL--- 528

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1002286447 370 rMVYASLIDGYVSTGRVSDGCRVLKEMVDAGYRadlgiyntLIGGLCEIEREDKAHKMF 428
Cdd:PLN03081  529 -NNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS--------MHPACTWIEVKKQDHSFF 578
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 266-300 1.51e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 39.36  E-value: 1.51e-04
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1002286447 266 VTFAIMVRALARAGMTDKLLEMIGRMRAEVCRPDV 300
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 321-381 9.86e-04

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 38.11  E-value: 9.86e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1002286447 321 RVWEEIRRDHVDPDTMAYTTMIAGLCNAGMVEKAEELFGEMRRKGLLVDRMVYASLIDGYV 381
Cdd:pfam13812   1 SILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIG 61
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 251-311 1.49e-03

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 37.34  E-value: 1.49e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1002286447 251 KLFDEMSHCSVRPMPVTFAIMVRALARAGMTDKLLEMIGRMRAEVCRPDVFVYTALVKTMV 311
Cdd:pfam13812   1 SILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIG 61
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 371-404 2.29e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 36.28  E-value: 2.29e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1002286447 371 MVYASLIDGYVSTGRVSDGCRVLKEMVDAGYRAD 404
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 546-580 2.60e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 35.89  E-value: 2.60e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1002286447 546 CTYSHMIPCFVDEGNIEEACSCYNLMMKAVWIPSI 580
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 511-545 4.64e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 35.12  E-value: 4.64e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1002286447 511 IYNILIENLLKIKERKKALVLFEEMQSSdDCKPDS 545
Cdd:TIGR00756   2 TYNTLIDGLCKAGRVEEALELFKEMKER-GIEPDV 35
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 357-413 7.79e-03

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 35.41  E-value: 7.79e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1002286447 357 LFGEMRRKGLLVDRMVYASLIDGYVSTGRVSDGCRVLKEMVDAGYRADLGIYNTLIG 413
Cdd:pfam13812   2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILG 58
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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