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Conserved domains on  [gi|1002230297|ref|XP_015648289|]
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chlorophyll a-b binding protein 2, chloroplastic-like [Oryza sativa Japonica Group]

Protein Classification

chlorophyll a-b binding protein( domain architecture ID 10010583)

chlorophyll a-b binding protein is a component of the light-harvesting complex (LHC) that functions as a light receptor; it captures and delivers excitation energy to photosystems with which it is closely associated

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN00025 PLN00025
photosystem II light harvesting chlorophyll a/b binding protein; Provisional
 5-265 0e+00

photosystem II light harvesting chlorophyll a/b binding protein; Provisional


:

Pssm-ID: 215033 [Multi-domain]  Cd Length: 262  Bit Score: 535.10  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002230297   5 TMALSSPAaLAGKAV-----ANAKVFGEGRVTMRKSAAKPKPAaasGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGW 79
Cdd:PLN00025    1 AMALSSTA-FAGQAAlkppnELSRKVGNGRVTMRKTVAKAAGS---GSIWYGPDRPKYLGPFSGETPSYLTGEFPGDYGW 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002230297  80 DTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILA 159
Cdd:PLN00025   77 DTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILA 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002230297 160 IWGCQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 239
Cdd:PLN00025  157 IWACQVVLMGAVEGYRVNGGPLGEGLDPLYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 236

                         250       260
                  ....*....|....*....|....*.
gi 1002230297 240 ENLADHLADPVNNNAWAYATNFVPGK 265
Cdd:PLN00025  237 ENLADHLADPVANNAWAYATNFVPGK 262
 
Name Accession Description Interval E-value
PLN00025 PLN00025
photosystem II light harvesting chlorophyll a/b binding protein; Provisional
 5-265 0e+00

photosystem II light harvesting chlorophyll a/b binding protein; Provisional


Pssm-ID: 215033 [Multi-domain]  Cd Length: 262  Bit Score: 535.10  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002230297   5 TMALSSPAaLAGKAV-----ANAKVFGEGRVTMRKSAAKPKPAaasGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGW 79
Cdd:PLN00025    1 AMALSSTA-FAGQAAlkppnELSRKVGNGRVTMRKTVAKAAGS---GSIWYGPDRPKYLGPFSGETPSYLTGEFPGDYGW 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002230297  80 DTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILA 159
Cdd:PLN00025   77 DTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILA 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002230297 160 IWGCQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 239
Cdd:PLN00025  157 IWACQVVLMGAVEGYRVNGGPLGEGLDPLYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 236

                         250       260
                  ....*....|....*....|....*.
gi 1002230297 240 ENLADHLADPVNNNAWAYATNFVPGK 265
Cdd:PLN00025  237 ENLADHLADPVANNAWAYATNFVPGK 262
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
65-232 2.39e-62

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 193.29  E-value: 2.39e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002230297  65 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKfGEAVWFKAGSQIFseggld 144
Cdd:pfam00504   1 PPAYLDGSLPGDYGFDPLGLSADPETFKRYREAELKHGRWAMLAVLGALVPEALGKLGGG-NEPVWFEAGAVAL------ 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002230297 145 ylgnpsliHAQSILAI-WGCQVVLMGAVEGYRVAGG---PLGEVVDPLYPGG-SFDPLGLA-DDPEAFAELKVKEIKNGR 218
Cdd:pfam00504  74 --------HAQSVPTLlALQILLLMGFLELARWQGGkapGLGGGGDRGYPGGfGFDPLGLAkKDPETLAELKLKELKNGR 145

                         170
                  ....*....|....
gi 1002230297 219 LAMFSMFGFFVQAI 232
Cdd:pfam00504 146 LAMIAFLGFFVQEL 159
 
Name Accession Description Interval E-value
PLN00025 PLN00025
photosystem II light harvesting chlorophyll a/b binding protein; Provisional
 5-265 0e+00

photosystem II light harvesting chlorophyll a/b binding protein; Provisional


Pssm-ID: 215033 [Multi-domain]  Cd Length: 262  Bit Score: 535.10  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002230297   5 TMALSSPAaLAGKAV-----ANAKVFGEGRVTMRKSAAKPKPAaasGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGW 79
Cdd:PLN00025    1 AMALSSTA-FAGQAAlkppnELSRKVGNGRVTMRKTVAKAAGS---GSIWYGPDRPKYLGPFSGETPSYLTGEFPGDYGW 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002230297  80 DTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILA 159
Cdd:PLN00025   77 DTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILA 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002230297 160 IWGCQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 239
Cdd:PLN00025  157 IWACQVVLMGAVEGYRVNGGPLGEGLDPLYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 236

                         250       260
                  ....*....|....*....|....*.
gi 1002230297 240 ENLADHLADPVNNNAWAYATNFVPGK 265
Cdd:PLN00025  237 ENLADHLADPVANNAWAYATNFVPGK 262
PLN00171 PLN00171
photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
 47-258 1.60e-76

photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional


Pssm-ID: 215088  Cd Length: 324  Bit Score: 235.08  E-value: 1.60e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002230297  47 SPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNG-VKF 125
Cdd:PLN00171  101 SFWYGEERPRWLGPIPYDYPDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGaVHF 180

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002230297 126 GEAVWFKAGSQIFSEGGLDYLGNPSL--IHAQSILAIWGCQVVLMGAVEGYRVAG----GPLGEVV--DPLYPGGS-FDP 196
Cdd:PLN00171  181 AEPVWWRVGYAKLQGDTLDYLGIPGLhiAGSQGVIVIAICQALLMVGPEYARYCGiealEPLGIYLpgDINYPGGAlFDP 260

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1002230297 197 LGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYA 258
Cdd:PLN00171  261 LGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHLSDPLHNNLLSSL 322
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
65-232 2.39e-62

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 193.29  E-value: 2.39e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002230297  65 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKfGEAVWFKAGSQIFseggld 144
Cdd:pfam00504   1 PPAYLDGSLPGDYGFDPLGLSADPETFKRYREAELKHGRWAMLAVLGALVPEALGKLGGG-NEPVWFEAGAVAL------ 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002230297 145 ylgnpsliHAQSILAI-WGCQVVLMGAVEGYRVAGG---PLGEVVDPLYPGG-SFDPLGLA-DDPEAFAELKVKEIKNGR 218
Cdd:pfam00504  74 --------HAQSVPTLlALQILLLMGFLELARWQGGkapGLGGGGDRGYPGGfGFDPLGLAkKDPETLAELKLKELKNGR 145

                         170
                  ....*....|....
gi 1002230297 219 LAMFSMFGFFVQAI 232
Cdd:pfam00504 146 LAMIAFLGFFVQEL 159
PLN00048 PLN00048
photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
 51-253 3.91e-49

photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional


Pssm-ID: 177680 [Multi-domain]  Cd Length: 262  Bit Score: 162.71  E-value: 3.91e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002230297  51 GADRVLYLGplSGEPPSYLTGEFPGDYGWDTAGLSaDPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVK 124
Cdd:PLN00048   39 GADRQLWFA--SKQSLSYLDGTLPGDFGFDPLGLS-DPEGaggFIEPQWLaygEVINGRFAMLGAAGAIAPEILGKAGLI 115

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002230297 125 FGEA--VWFKAGSqIFSEGGLDYLGNPslihaqsiLAIWGCQVVLMGAVEGYRVAG----GPLGEVV------------D 186
Cdd:PLN00048  116 PQETalPWFQSGV-IPPAGTYDYWADP--------YTLFVLEMALMGFAEHRRAQDyykpGSMGKQYflglekglggsgN 186

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1002230297 187 PLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
Cdd:PLN00048  187 PAYPGGPfFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLDHLADPVNNN 254
PLN00099 PLN00099
light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
 61-253 5.26e-46

light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional


Pssm-ID: 177717  Cd Length: 243  Bit Score: 154.42  E-value: 5.26e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002230297  61 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLarngvkfGEAVWFKAGSQIFS 139
Cdd:PLN00099   48 MPGQPrPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVKAQEWAAI 120

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002230297 140 EGG-LDYLGNPslIHAQSILAIWGCQVVLMGAVEGYRVAGGplgevvDP---LYPGGSFDPLGLADDPEAFAELKVKEIK 215
Cdd:PLN00099  121 PGGqATYLGNP--VPWGTLPTILAIEFLAIAFVEHQRSMEK------DPekkKYPGGAFDPLGYSKDPKKFEEYKVKEIK 192

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1002230297 216 NGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 253
Cdd:PLN00099  193 NGRLALLAFVGFCVqQSAYPGTGPLENLATHLADPWHNN 231
PLN00147 PLN00147
light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
 51-253 2.17e-45

light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional


Pssm-ID: 215076 [Multi-domain]  Cd Length: 252  Bit Score: 153.11  E-value: 2.17e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002230297  51 GADRVLYLGPLSgePPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKfGEAVW 130
Cdd:PLN00147   42 AQERPTWLPGLD--PPPHLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTGIR-NLPVW 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002230297 131 FKAGSQIFsegglDYLGNPSLIHAQsilaiwgcqVVLMGAVEGYRV-----------AGGPLG-----EVVDPLYPGGS- 193
Cdd:PLN00147  119 YEAGAVKF-----EFASTRTLFVVQ---------LLLMGFAETKRYmdfvspgsqakEGSFFGleaalEGLEPGYPGGPl 184

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002230297 194 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
Cdd:PLN00147  185 FNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLTHLSDPWHKT 244
PLN00097 PLN00097
photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
 65-253 1.49e-40

photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional


Pssm-ID: 165670 [Multi-domain]  Cd Length: 244  Bit Score: 140.14  E-value: 1.49e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002230297  65 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKfGEAVWFKAGS-QIFseggl 143
Cdd:PLN00097   53 AAAHLDGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGMA-DLPNWIDAAKwDGY----- 126

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002230297 144 dYLGNPSLIHAQSILAIWGcqvvlmgAVEGYRVAGGPLGEVVDPL-------------YPGGSFDPLGLADDPEAFAELK 210
Cdd:PLN00097  127 -WAGAGPLFFIQMAMFNWA-------EIRRWQDMKAPGSMNEDPLfgankgdtntdvgYPKGLFDKFGWAKDEKKAAELK 198

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1002230297 211 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
Cdd:PLN00097  199 LKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFSHLADPGHNG 241
PLN00187 PLN00187
photosystem II light-harvesting complex II protein Lhcb4; Provisional
 51-250 3.00e-38

photosystem II light-harvesting complex II protein Lhcb4; Provisional


Pssm-ID: 177781  Cd Length: 286  Bit Score: 135.30  E-value: 3.00e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002230297  51 GADRVLYLGplSGEPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN------------------------- 94
Cdd:PLN00187   49 GADRPLWFP--GAKAPEWLDGSLVGDYGFDPFGLGKPAEylqfdldsldqNLAKNlagdvigtrteaseikstpfqpyse 126

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002230297  95 -------RELEVIHCRWAMLGALGCVFPELLArnGVkfgeaVWFKAGSQIFSEGGlDYLGNPsLIHAQSILaIWgCQVVL 167
Cdd:PLN00187  127 vfglqrfRECELIHGRWAMLATLGALSVEALT--GV-----TWQDAGKVELVDGS-SYLGQP-LPFSITTL-IW-IEVLV 195

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002230297 168 MGAVEGYRVAGgplgevVDP---LYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 243
Cdd:PLN00187  196 IGYIEFQRNAE------LDPekrLYPGGKfFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWA 269


                  ....*..
gi 1002230297 244 DHLADPV 250
Cdd:PLN00187  270 THLSDPL 276
PLN00098 PLN00098
light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
 51-260 4.92e-36

light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional


Pssm-ID: 177716  Cd Length: 267  Bit Score: 129.26  E-value: 4.92e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002230297  51 GADRVLYLGPLSgePPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGvkFGEAV- 129
Cdd:PLN00098   59 PPDRPLWFPGSS--PPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLG--FIENFs 134

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002230297 130 WFKAGSQifsegglDYLGNPSlihaqsilAIWGCQVVLMGAVEGYRVAG--GPLGEVVDPL------------YPGGS-F 194
Cdd:PLN00098  135 WYDAGAR-------EYFADPT--------TLFVVQMVLMGWAEGRRWADliKPGCVDIEPKlpnktnpkpdvgYPGGLwF 199

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1002230297 195 DPLGLA-DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATN 260
Cdd:PLN00098  200 DPMMWGrGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHLADPGHCNVFSAFTS 266
PLN00100 PLN00100
light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
 64-253 4.09e-33

light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional


Pssm-ID: 215054  Cd Length: 246  Bit Score: 120.75  E-value: 4.09e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002230297  64 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLarngvkfGEAVWFKAGSQIFsegGL 143
Cdd:PLN00100   43 TAPKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAV-------GLPKFWEAGAEKY---GL 112

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002230297 144 DYlgnpslihaQSILAIwgcQVVLMGAVEGYRVAG----GPLGevVDPLYPggsFDPLGLaDDPEafaeLKVKEIKNGRL 219
Cdd:PLN00100  113 DL---------QTLVLI---QVVVMAVLEAARYRGfmktGESG--VLSFFP---FDPTGM-DSPE----MKVKEVKNGRL 170

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1002230297 220 AMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
Cdd:PLN00100  171 AMLAFLGMVSQYAVTGKSPLEGLKAHMANPGHVN 204
PLN00101 PLN00101
Photosystem I light-harvesting complex type 4 protein; Provisional
 66-252 2.98e-31

Photosystem I light-harvesting complex type 4 protein; Provisional


Pssm-ID: 215055 [Multi-domain]  Cd Length: 250  Bit Score: 116.17  E-value: 2.98e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002230297  66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVkFGEAVWFKAG-SQIFSEGGLD 144
Cdd:PLN00101   63 PGYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI-INAPQWYDAGkAEYFASSSTL 141

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002230297 145 YLGNPSLIHAQSILAiW------GCqVVLMGAVEGYRVAGGPLGevvdplYPGGSFDPLGLADDPEAfaelKVKEIKNGR 218
Cdd:PLN00101  142 FVIEFILFHYVEIRR-WqdiknpGS-VNQDPIFKQYSLPPNEVG------YPGGIFNPLNFAPTEEA----KEKELANGR 209

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1002230297 219 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 252
Cdd:PLN00101  210 LAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHN 243
PLN00170 PLN00170
photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
 66-242 1.28e-18

photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional


Pssm-ID: 215087 [Multi-domain]  Cd Length: 255  Bit Score: 82.67  E-value: 1.28e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002230297  66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEllARNGVKfgeavWFKAGSQifseggldy 145
Cdd:PLN00170   67 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP-----WFEAGAD--------- 130

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002230297 146 lgnPSLIHAQSILAIWGCQVVLMGAVEGYRVAG--GPLGEVV------------------DPLYPGGS-FDPLGLAD--- 201
Cdd:PLN00170  131 ---PGAIAPFSFGSLLGTQLLLMGWVESKRWVDffNPDSQSVewatpwsrtaenfanatgLQGYPGGKfFDPLGLAGtvk 207

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1002230297 202 ------DPEAFAELKVKEIKNGRLAMFSMFGFFVQAiVTGKGPLENL 242
Cdd:PLN00170  208 dgvyipDFEKLERLKLAEIKHARLAMVAMLIFYFEA-GQGKTPLGAL 253
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
194-237 1.15e-06

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 47.30  E-value: 1.15e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1002230297 194 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 237
Cdd:pfam00504  15 FDPLGLSADPETFKRYREAELKHGRWAMLAVLGALVPEALGKLG 58
PLN00089 PLN00089
fucoxanthin-chlorophyll a/c binding protein; Provisional
 59-237 1.35e-05

fucoxanthin-chlorophyll a/c binding protein; Provisional


Pssm-ID: 177710 [Multi-domain]  Cd Length: 209  Bit Score: 45.06  E-value: 1.35e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002230297  59 GPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAK-NRELEVIHCRWAMLGALGCVFPELLARNGvkfgEAVWFKAGSQI 137
Cdd:PLN00089   39 GAIGFAAKEFMFIGKTGSKKFDPLGLAEKVEEFLPwFRESELKHGRAAMLAVAGFIAPDFVRIPG----EAYSFAAIPKT 114

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002230297 138 FsEGGLDYLGNPSLIHAQSILAIWGCQV---VLMGAVEGYRVAGGplgevvdplypgGSFDPLGLA-DDPEAFAELKVKE 213
Cdd:PLN00089  115 I-DAHDALLKSGAMIQIFAWIGFVDLAVsapAAAAAAEFDRTPGD------------FGFDLLALYpKDAAKMEKKKDKE 181

                         170       180
                  ....*....|....*....|....
gi 1002230297 214 IKNGRLAMFSMFGFFVQAIVTGKG 237
Cdd:PLN00089  182 LKNGRLAMVAIGGIATGSAITGHG 205
PLN00120 PLN00120
fucoxanthin-chlorophyll a-c binding protein; Provisional
 190-231 4.34e-05

fucoxanthin-chlorophyll a-c binding protein; Provisional


Pssm-ID: 215063  Cd Length: 202  Bit Score: 43.19  E-value: 4.34e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1002230297 190 PGGSFDPLGLAD--DPEAFAELKVKEIKNGRLAMFSMFGFFVQA 231
Cdd:PLN00120   43 PLGFFDPLGLVDdgDQEKFDRLRYVEIKHGRISMLAVVGYLVTE 86
PLN00170 PLN00170
photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
 182-229 4.91e-03

photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional


Pssm-ID: 215087 [Multi-domain]  Cd Length: 255  Bit Score: 37.60  E-value: 4.91e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1002230297 182 GEVVDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV 229
Cdd:PLN00170   62 GNLVDPEWLDGSlpgdygFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV 115
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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