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Conserved domains on  [gi|1002290340|ref|XP_015649506|]
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uncharacterized protein LOC4345525 [Oryza sativa Japonica Group]

Protein Classification

DC1 domain-containing protein( domain architecture ID 10503954)

DC1 (divergent C1) domain-containing protein similar to Capsicum annuum cysteine/histidine-rich DC1 domain protein CaDC1 that binds both RNA and DNA and is required for plant cell death and defense response

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 16-60 1.73e-05

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


:

Pssm-ID: 427141  Cd Length: 48  Bit Score: 41.21  E-value: 1.73e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1002290340  16 HPeHELTL-AATAGAPFRCDGCQEP-GGDGPRYRCAPCNFDLHTDCA 60
Cdd:pfam03107   3 HP-HPLTLtGSPRDGSFTCDACGLKiDGFFGFYSCSECDFVLHERCA 48
 
Name Accession Description Interval E-value
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 16-60 1.73e-05

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


Pssm-ID: 427141  Cd Length: 48  Bit Score: 41.21  E-value: 1.73e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1002290340  16 HPeHELTL-AATAGAPFRCDGCQEP-GGDGPRYRCAPCNFDLHTDCA 60
Cdd:pfam03107   3 HP-HPLTLtGSPRDGSFTCDACGLKiDGFFGFYSCSECDFVLHERCA 48
 
Name Accession Description Interval E-value
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 16-60 1.73e-05

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


Pssm-ID: 427141  Cd Length: 48  Bit Score: 41.21  E-value: 1.73e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1002290340  16 HPeHELTL-AATAGAPFRCDGCQEP-GGDGPRYRCAPCNFDLHTDCA 60
Cdd:pfam03107   3 HP-HPLTLtGSPRDGSFTCDACGLKiDGFFGFYSCSECDFVLHERCA 48
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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