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Conserved domains on  [gi|1002292565|ref|XP_015650637|]
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ATP synthase subunit d, mitochondrial [Oryza sativa Japonica Group]

Protein Classification

ATP synthase subunit d family protein( domain architecture ID 7998)

ATP synthase subunit d family protein may be part of the Fo complex of a mitochondrial FoF1-ATP synthase, which produces ATP from ADP in the presence of a proton gradient across the membrane that is generated by electron transport complexes of the respiratory chain

Gene Ontology:  GO:0015986|GO:0015078|GO:0000276
PubMed:  1970643

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Mt_ATP-synt_D super family cl05445
ATP synthase D chain, mitochondrial (ATP5H); This family consists of several ATP synthase D ...
 15-158 6.07e-15

ATP synthase D chain, mitochondrial (ATP5H); This family consists of several ATP synthase D chain, mitochondrial (ATP5H) proteins. Subunit d has no extensive hydrophobic sequences, and is not apparently related to any subunit described in the simpler ATP synthases in bacteria and chloroplasts.


The actual alignment was detected with superfamily member pfam05873:

Pssm-ID: 461764 [Multi-domain]  Cd Length: 154  Bit Score: 68.03  E-value: 6.07e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002292565  15 KAGKAIDWEGMAKmLVSDEARKEFNTLRRTFEDVNHQLQtKFSQEPQPIDWEYYRKGIGSK-VVDMYKEAYESIEIPKYV 93
Cdd:pfam05873   4 IALKAINWAALAE-RVPPNQKAQFNAFKAKSDEYLRRVA-ALPEEPPKIDWAYYKKNVAKPgLVDDFEKKYEALKIPYPE 81

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1002292565  94 DTVTPQYKPKFDALLVELKEAEKESLKESERIEKELAELQEMKKnISTMTADEYFAKHPEVKQKF 158
Cdd:pfam05873  82 DTYTSEVDAQEKEVVKEIKEFIEESNKRIAEYEKELEKLKNLLP-FEQMTMEDFCEAFPELALDP 145
 
Name Accession Description Interval E-value
Mt_ATP-synt_D pfam05873
ATP synthase D chain, mitochondrial (ATP5H); This family consists of several ATP synthase D ...
 15-158 6.07e-15

ATP synthase D chain, mitochondrial (ATP5H); This family consists of several ATP synthase D chain, mitochondrial (ATP5H) proteins. Subunit d has no extensive hydrophobic sequences, and is not apparently related to any subunit described in the simpler ATP synthases in bacteria and chloroplasts.


Pssm-ID: 461764 [Multi-domain]  Cd Length: 154  Bit Score: 68.03  E-value: 6.07e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002292565  15 KAGKAIDWEGMAKmLVSDEARKEFNTLRRTFEDVNHQLQtKFSQEPQPIDWEYYRKGIGSK-VVDMYKEAYESIEIPKYV 93
Cdd:pfam05873   4 IALKAINWAALAE-RVPPNQKAQFNAFKAKSDEYLRRVA-ALPEEPPKIDWAYYKKNVAKPgLVDDFEKKYEALKIPYPE 81

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1002292565  94 DTVTPQYKPKFDALLVELKEAEKESLKESERIEKELAELQEMKKnISTMTADEYFAKHPEVKQKF 158
Cdd:pfam05873  82 DTYTSEVDAQEKEVVKEIKEFIEESNKRIAEYEKELEKLKNLLP-FEQMTMEDFCEAFPELALDP 145
 
Name Accession Description Interval E-value
Mt_ATP-synt_D pfam05873
ATP synthase D chain, mitochondrial (ATP5H); This family consists of several ATP synthase D ...
 15-158 6.07e-15

ATP synthase D chain, mitochondrial (ATP5H); This family consists of several ATP synthase D chain, mitochondrial (ATP5H) proteins. Subunit d has no extensive hydrophobic sequences, and is not apparently related to any subunit described in the simpler ATP synthases in bacteria and chloroplasts.


Pssm-ID: 461764 [Multi-domain]  Cd Length: 154  Bit Score: 68.03  E-value: 6.07e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002292565  15 KAGKAIDWEGMAKmLVSDEARKEFNTLRRTFEDVNHQLQtKFSQEPQPIDWEYYRKGIGSK-VVDMYKEAYESIEIPKYV 93
Cdd:pfam05873   4 IALKAINWAALAE-RVPPNQKAQFNAFKAKSDEYLRRVA-ALPEEPPKIDWAYYKKNVAKPgLVDDFEKKYEALKIPYPE 81

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1002292565  94 DTVTPQYKPKFDALLVELKEAEKESLKESERIEKELAELQEMKKnISTMTADEYFAKHPEVKQKF 158
Cdd:pfam05873  82 DTYTSEVDAQEKEVVKEIKEFIEESNKRIAEYEKELEKLKNLLP-FEQMTMEDFCEAFPELALDP 145
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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