|
Name |
Accession |
Description |
Interval |
E-value |
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
28-792 |
0e+00 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 1050.85 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 28 LGGDSTFFKSFNKCTEDDFEFPFAKTNLSKNGENIDSDPALQKVNFLPVLEQVGNS-DCHYQEGLKDSDLENSEGLSRVY 106
Cdd:pfam05483 1 AGGDSNFFKSFNKCTEDDFEFPFAKSNLSKNGENIDSDPAFQKLNFLPMLEQVANSgDCHYQEGLKDSDFENSEGLSRLY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 107 SKLYKEAEKIKKWKVSTEAELRQKESKLQENRKIIEAQRKAIQELQFGNEKVSLKLEEGIQENKDLIKENNATRHLCNLL 186
Cdd:pfam05483 81 SKLYKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATRHLCNLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 187 KETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMITAFEELRVQAENSRLEMHFKLKEDYEKIQHLEQEYKKEINDKEK 266
Cdd:pfam05483 161 KETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKEINDKEK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 267 QVSLLLIQITEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQ 346
Cdd:pfam05483 241 QVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQ 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 347 IATKTICQLTEEKETQMEESNKARAAHSFVVTEFETTVCSLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKLT 426
Cdd:pfam05483 321 IATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFK 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 427 NNKEVELEELKKVLGEKETLLYENKQFEKIAEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTEL 506
Cdd:pfam05483 401 NNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTEL 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 507 ENEKLKNTELTSHCNKLSLENKELTQETSDMTLELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELEYVREELKQK 586
Cdd:pfam05483 481 EKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQK 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 587 RDEVKCKLDKSEEN---------------------CNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNK 645
Cdd:pfam05483 561 GDEVKCKLDKSEENarsieyevlkkekqmkilenkCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNK 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 646 LELELESAKQKFGEITDTYQKEIEDKKISEENLLEEVEKAKVIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKII 725
Cdd:pfam05483 641 LELELASAKQKFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKII 720
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1034561377 726 EERDSELGLYKSKEQEQSSLRASLEIELSNLKAELLSVKKQLEIEREEKEKLKREAKENTATLKEKK 792
Cdd:pfam05483 721 EERDSELGLYKNKEQEQSSAKAALEIELSNIKAELLSLKKQLEIEKEEKEKLKMEAKENTAILKDKK 787
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
110-791 |
1.11e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 75.86 E-value: 1.11e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 110 YKEAEKIKKWKVSTeAELRQKESKLQENRKIIEAQRKAIQELQFGNEKVSLKLEEGIQENKDLIKENNATRHLCNLLKET 189
Cdd:TIGR02168 218 LKAELRELELALLV-LRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 190 CARsAEKTKKYEYEREEtrqvymdlnnNIEKMITAFEELRVQAENSRLEmhfkLKEDYEKIQHLEQEYKKEINDKEKQVS 269
Cdd:TIGR02168 297 ISR-LEQQKQILRERLA----------NLERQLEELEAQLEELESKLDE----LAEELAELEEKLEELKEELESLEAELE 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 270 LLLIQITEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQsiekqhhLTKELEDIKVSLQRSVSTQKALEEDLQIAT 349
Cdd:TIGR02168 362 ELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIER-------LEARLERLEDRRERLQQEIEELLKKLEEAE 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 350 KTICQLTEEKETQMEEsnkaraahsfvvtEFETTVCSLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKLTNNK 429
Cdd:TIGR02168 435 LKELQAELEELEEELE-------------ELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENL 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 430 EVELEELKKVLGEK------------------------ETLLYENKQ---------FEKIAEELKGTEQELIGLLQAREK 476
Cdd:TIGR02168 502 EGFSEGVKALLKNQsglsgilgvlselisvdegyeaaiEAALGGRLQavvvenlnaAKKAIAFLKQNELGRVTFLPLDSI 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 477 EVHDLEIQLTAITTSEQYYSKEVKDL-KTELENEKLKN---------TELTSHCNKLSLENKELT--------------- 531
Cdd:TIGR02168 582 KGTEIQGNDREILKNIEGFLGVAKDLvKFDPKLRKALSyllggvlvvDDLDNALELAKKLRPGYRivtldgdlvrpggvi 661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 532 ---------------QETSDMTLELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELeyvrEELKQKRDEVKCKLDK 596
Cdd:TIGR02168 662 tggsaktnssilerrREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKEL----EELSRQISALRKDLAR 737
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 597 SEENCNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKFGEITDTYQKEIEDKKISEE 676
Cdd:TIGR02168 738 LEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNE 817
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 677 NLLEEVEKAKVIADEAVKLQKEID------KRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKSKEQEQSSLRASLE 750
Cdd:TIGR02168 818 EAANLRERLESLERRIAATERRLEdleeqiEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELE 897
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|.
gi 1034561377 751 I----------ELSNLKAELLSVKKQLEIEREEKEKLKREAKENTATLKEK 791
Cdd:TIGR02168 898 ElseelrelesKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEE 948
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
242-794 |
1.33e-12 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 72.02 E-value: 1.33e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 242 KLKEDYEKIQHLEQEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKVNQLEEkTKLQSENLKQSIEKQHHLT 321
Cdd:PRK03918 176 RRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEE-LKEEIEELEKELESLEGSK 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 322 KELEDIKVSLQRSVSTQKALEEDLQIATKTICQLtEEKETQMEESNKARAAHSFVVTEFETTVCSLEELLRTEQQRLEkn 401
Cdd:PRK03918 255 RKLEEKIRELEERIEELKKEIEELEEKVKELKEL-KEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIK-- 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 402 edqlkiltmELQKKSSELEEMTKLTNNKEVELEELKKVLGEKETLLYENKQFEKIAEELKG-TEQELIGLLQAREKEVHD 480
Cdd:PRK03918 332 ---------ELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGlTPEKLEKELEELEKAKEE 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 481 LEIQLTAITTSEQYYSKEVKDLKTELEneklkntELTSHCNKLSLENKELTQE-----TSDMTLELKNQQEDINNNKKQE 555
Cdd:PRK03918 403 IEEEISKITARIGELKKEIKELKKAIE-------ELKKAKGKCPVCGRELTEEhrkelLEEYTAELKRIEKELKEIEEKE 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 556 ERM---LKQIENLQETETQLRNELEyVREELKQKRDEVK-CKLDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTA 631
Cdd:PRK03918 476 RKLrkeLRELEKVLKKESELIKLKE-LAEQLKELEEKLKkYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEEL 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 632 ESKqLNVYEIKVNKLELELESAKQKFGEITDTYQKEIEDKKISEENLLEEVEKAKVIADEAVKLQKEIdKRCQHKIAEMV 711
Cdd:PRK03918 555 KKK-LAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKEL-KKLEEELDKAF 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 712 ALMEKHKHQYDKIIEERDSELGLYKSKEQEQ-SSLRASLEIELSNLKAELlsvkKQLEIEREEKEKLKREAKENTATLKE 790
Cdd:PRK03918 633 EELAETEKRLEELRKELEELEKKYSEEEYEElREEYLELSRELAGLRAEL----EELEKRREEIKKTLEKLKEELEEREK 708
|
....
gi 1034561377 791 KKDK 794
Cdd:PRK03918 709 AKKE 712
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
195-717 |
1.45e-12 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 72.07 E-value: 1.45e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 195 EKTKKYEYEREETRQVYMDLNNNIEKMITAFEELRVQAENSRLEMHFKLKEDY--EKIQHLEQEYKKEINDKEKQVSL-- 270
Cdd:pfam15921 335 EAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHkrEKELSLEKEQNKRLWDRDTGNSIti 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 271 --LLIQITEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQIA 348
Cdd:pfam15921 415 dhLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESS 494
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 349 TKTICQLTeekeTQMEESNKARAAHSFVVTEFETTVcsleELLRTEQQRLEKNEDQLKiltmelqkksseleemtkltnN 428
Cdd:pfam15921 495 ERTVSDLT----ASLQEKERAIEATNAEITKLRSRV----DLKLQELQHLKNEGDHLR---------------------N 545
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 429 KEVELEELKKVLGEKETLLYENKQFEKIAEELKGTEQELIGLLQAR----EKEVHDLEIQLTAITTSEQYYSKEVKDLKT 504
Cdd:pfam15921 546 VQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEkaqlEKEINDRRLELQEFKILKDKKDAKIRELEA 625
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 505 ELENEKLKNTELTSHCNKLSLENKELTQETSDMTLELKNQQEDINNNKKQEERMLKQIENLQE----TETQLRNELEYVR 580
Cdd:pfam15921 626 RVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEemetTTNKLKMQLKSAQ 705
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 581 EELKQKRDEVKcKLDKSEENCNN----LRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQK 656
Cdd:pfam15921 706 SELEQTRNTLK-SMEGSDGHAMKvamgMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATE 784
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1034561377 657 FGEITDtyqkEIEDKKISEENLLEEVEKAKVIADEAVKLQKEIDKRCQHKIAEMVALMEKH 717
Cdd:pfam15921 785 KNKMAG----ELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRLKLQH 841
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
186-585 |
3.30e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.86 E-value: 3.30e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 186 LKETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMITAFEELRVQAENsrlemhfkLKEDYEKIQHLEQEYKKEINDKE 265
Cdd:TIGR02168 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISA--------LRKDLARLEAEVEQLEERIAQLS 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 266 KQVSLLLIQITEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEEDL 345
Cdd:TIGR02168 754 KELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRI 833
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 346 QIATKTICQLTEEKETQMEEsnkaraahsfvvtefettVCSLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKL 425
Cdd:TIGR02168 834 AATERRLEDLEEQIEELSED------------------IESLAAEIEELEELIEELESELEALLNERASLEEALALLRSE 895
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 426 TNNKEVELEELKKVLGEKETLLYE-NKQFEKIAEELKGTEQELIGLL-QAREKEVHDLEIQLT---AITTSEQYYSKEVK 500
Cdd:TIGR02168 896 LEELSEELRELESKRSELRRELEElREKLAQLELRLEGLEVRIDNLQeRLSEEYSLTLEEAEAlenKIEDDEEEARRRLK 975
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 501 DLKTELENekLKNTeltshcNKLSLENKELTQETSDmtlELKNQQEDINNNKKQEERMLKQIEnlQETETQLRNELEYVR 580
Cdd:TIGR02168 976 RLENKIKE--LGPV------NLAAIEEYEELKERYD---FLTAQKEDLTEAKETLEEAIEEID--REARERFKDTFDQVN 1042
|
....*
gi 1034561377 581 EELKQ 585
Cdd:TIGR02168 1043 ENFQR 1047
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
110-837 |
1.06e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 69.40 E-value: 1.06e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 110 YKEAEKIKKWKVSTEAELRQKESKLQENRKIIEAQRK--AIQELQFGNEKVSLKLEEgiQENKDLIKENNATRHLCNLLK 187
Cdd:PTZ00121 1220 AEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKfeEARMAHFARRQAAIKAEE--ARKADELKKAEEKKKADEAKK 1297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 188 ETCARSAEKTKKYEYEREETRQvymdLNNNIEKMITAFEELRVQAENSRLEMHFKLKEDYEKIQHLEQEYKKEINDKEKQ 267
Cdd:PTZ00121 1298 AEEKKKADEAKKKAEEAKKADE----AKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKK 1373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 268 vsllliqiTEKENKMKDLTFLLEESR--DKVNQLEEKTKLQSENLKQSIE---KQHHLTKELEDIKVSLQRSVSTQKALE 342
Cdd:PTZ00121 1374 --------EEAKKKADAAKKKAEEKKkaDEAKKKAEEDKKKADELKKAAAakkKADEAKKKAEEKKKADEAKKKAEEAKK 1445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 343 EDLQIATKTICQLTEEKETQMEESNKARAAHSfvvtefettvcSLEELLRTEQqrLEKNEDQLKILTMELQKKSSELEEM 422
Cdd:PTZ00121 1446 ADEAKKKAEEAKKAEEAKKKAEEAKKADEAKK-----------KAEEAKKADE--AKKKAEEAKKKADEAKKAAEAKKKA 1512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 423 TKLTNNKEV-ELEELKKVLGEKETLLYENKQFEKIAEELKGTEQ----ELIGLLQAREKEVHDLEIQLTAITTSEQYYSK 497
Cdd:PTZ00121 1513 DEAKKAEEAkKADEAKKAEEAKKADEAKKAEEKKKADELKKAEElkkaEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEA 1592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 498 EVKDLKTELENEKLKNTELTSHCNKLSLENKELTQETsdmtlELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELE 577
Cdd:PTZ00121 1593 RIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAE-----EEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEA 1667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 578 YVREELKQKRDEVKCKLDKSEENCNNLRKQVENKNKyIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKF 657
Cdd:PTZ00121 1668 KKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKK-AEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKA 1746
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 658 GEITdtyQKEIEDKKISEENLLEEVEKAKVIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIE-ERDSELGLYK 736
Cdd:PTZ00121 1747 EEAK---KDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEgGKEGNLVIND 1823
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 737 SKEQEQSSLRasleiELSNLKAELLSVKKQLEIEREEKEKLKREAKENTATLKEKKDKKTQTF--LLETPEIYwKLDSKA 814
Cdd:PTZ00121 1824 SKEMEDSAIK-----EVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEeeIEEADEIE-KIDKDD 1897
|
730 740
....*....|....*....|...
gi 1034561377 815 VPSQTVSRNFTSVDHGISKDKRD 837
Cdd:PTZ00121 1898 IEREIPNNNMAGKNNDIIDDKLD 1920
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
451-752 |
1.46e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.81 E-value: 1.46e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 451 KQFEKIAEELKGTEQELIGL-LQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTELENEKLKNTELTSHCNKLSLENKE 529
Cdd:COG1196 213 ERYRELKEELKELEAELLLLkLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYE 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 530 LTQETSDMTLELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELeyvrEELKQKRDEVKCKLDKSEENCNNLRKQVE 609
Cdd:COG1196 293 LLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEEL----EELEEELEEAEEELEEAEAELAEAEEALL 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 610 NKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQkfgeitdtyqkEIEDKKISEENLLEEVEKAKVIA 689
Cdd:COG1196 369 EAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLE-----------RLERLEEELEELEEALAELEEEE 437
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1034561377 690 DEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKSKEQEQSSLRASLEIE 752
Cdd:COG1196 438 EEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAE 500
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
458-768 |
1.82e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.54 E-value: 1.82e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 458 EELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTELENEKLKNTELTSHCNKLSLENKELTQETSDM 537
Cdd:TIGR02168 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTEL 759
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 538 TLELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELEYVREELKQKRDEV---KCKLDKSEENCNNLRKQVENKNKY 614
Cdd:TIGR02168 760 EAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELtllNEEAANLRERLESLERRIAATERR 839
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 615 IEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAkqkfgeiTDTYQKEIEDKKISEENLLEEVEKAKVIADEAVK 694
Cdd:TIGR02168 840 LEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAL-------LNERASLEEALALLRSELEELSEELRELESKRSE 912
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1034561377 695 LQKEIDkRCQHKIAEMVALMEKHKHQYDKIIEERDSElglYKSKEQEQSSLRASLEIELSNLKAELLSVKKQLE 768
Cdd:TIGR02168 913 LRRELE-ELREKLAQLELRLEGLEVRIDNLQERLSEE---YSLTLEEAEALENKIEDDEEEARRRLKRLENKIK 982
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
255-802 |
5.90e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.88 E-value: 5.90e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 255 QEYKKEIndKEKQVSLLLIQITEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRS 334
Cdd:COG1196 216 RELKEEL--KELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYEL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 335 VSTQKALEEDLQIATKTICQLTEEKETQMEESNKARAAHSFVVTEFETtvcsLEELLRTEQQRLEKNEDQLKILTMELQK 414
Cdd:COG1196 294 LAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEE----LEEELEEAEEELEEAEAELAEAEEALLE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 415 KSSELEEmtkltnnkevELEELKKVLGEKETLLYENKQFEKIAEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQY 494
Cdd:COG1196 370 AEAELAE----------AEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEE 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 495 YSKEVKDLKTELENEKLKNTELTshcnKLSLENKELTQETSDMTLELKNQQEDINNNKKQEERMLKQIENLQET--ETQL 572
Cdd:COG1196 440 EEEALEEAAEEEAELEEEEEALL----ELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGvkAALL 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 573 RNELEYVREELKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAEskqlnvyeikvnklELELES 652
Cdd:COG1196 516 LAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRAT--------------FLPLDK 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 653 AKQKFGEITDTYQKEIEDKKISEENLLEEVEKAKVIADEAVKLQKEIDKRCQHKIAEMVALMEKHK--HQYDKIIEERDS 730
Cdd:COG1196 582 IRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLRevTLEGEGGSAGGS 661
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1034561377 731 ELGLYKSKEQEQSSLRASLEIELSNLKAELLSVKKQLEIEREEKEKLKREAKENTATLKEKKDKKTQTFLLE 802
Cdd:COG1196 662 LTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAE 733
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
123-794 |
6.96e-11 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 66.53 E-value: 6.96e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 123 TEAELRQKESKLQENRKIIEAQRKAIQELQFGNEKVSLKLEEGIQENKDLIKENNATRHLCNLLKETCARSAEKTKKYEY 202
Cdd:pfam02463 193 EELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLK 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 203 EREETRQVYMDLNNNIEKMITAFEELRVQAENSRLEMHFK------LKEDYEKIQHLEQEYKKEINDKEKQVSLLLIQIT 276
Cdd:pfam02463 273 ENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDeeklkeSEKEKKKAEKELKKEKEEIEELEKELKELEIKRE 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 277 EKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKqhhLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLT 356
Cdd:pfam02463 353 AEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKL---KEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEEL 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 357 EEKETQMEESNKARAAHSFVVTEFETT---------VCSLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKLTN 427
Cdd:pfam02463 430 EILEEEEESIELKQGKLTEEKEELEKQelkllkdelELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGL 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 428 NKEVELEELKKVLGEKETLLYENKQFEKIAEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTELE 507
Cdd:pfam02463 510 KVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKL 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 508 NEKLKNTELTSHCNKLSLENKELTQETSDMTLELKNQ-QEDINNNKKQEERMLKQIENLQETETQLRNELEYVR-----E 581
Cdd:pfam02463 590 PLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEgILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEvkaslS 669
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 582 ELKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKFGEIT 661
Cdd:pfam02463 670 ELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEE 749
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 662 DTYQKEIEDKKISEENLLEEVEKAKVIADEAVKLQK---EIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKSK 738
Cdd:pfam02463 750 EEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKlkvEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEK 829
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*.
gi 1034561377 739 EQEQSSLRASLEIELSNLKAELLSVKKQLEIEREEKEKLKREAKENTATLKEKKDK 794
Cdd:pfam02463 830 IKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLK 885
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
199-794 |
5.12e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.54 E-value: 5.12e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 199 KYEYEREETRQVYMDLNNNIEKMITAFEELRVQAEN-----SRLEMHFKLKEDYEKIQHL-----EQEYKKEINDKEKQV 268
Cdd:TIGR02168 169 KYKERRKETERKLERTRENLDRLEDILNELERQLKSlerqaEKAERYKELKAELRELELAllvlrLEELREELEELQEEL 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 269 SLLLIQITEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQ-- 346
Cdd:TIGR02168 249 KEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEel 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 347 -----IATKTICQLTEEKETQMEESNKARAAHS---FVVTEFETTVCSLEELLRTEQQ--------------RLEKNEDQ 404
Cdd:TIGR02168 329 eskldELAEELAELEEKLEELKEELESLEAELEeleAELEELESRLEELEEQLETLRSkvaqlelqiaslnnEIERLEAR 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 405 LKILTMELQKKSSELEEMtkLTNNKEVELEELKKVLGEK----ETLLYENKQFEKIAEELKGTEQELIGLLQAREKEVHD 480
Cdd:TIGR02168 409 LERLEDRRERLQQEIEEL--LKKLEEAELKELQAELEELeeelEELQEELERLEEALEELREELEEAEQALDAAERELAQ 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 481 LEIQLTAITTSEQYYSKEVKDLKTELEN---------------------EKLKNTELTSHCNKLSLENKE--------LT 531
Cdd:TIGR02168 487 LQARLDSLERLQENLEGFSEGVKALLKNqsglsgilgvlselisvdegyEAAIEAALGGRLQAVVVENLNaakkaiafLK 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 532 QETSD--MTLELKNQ-----QEDINNNKKQEERMLKQIENLQETETQLRNELEY-------------------------- 578
Cdd:TIGR02168 567 QNELGrvTFLPLDSIkgteiQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYllggvlvvddldnalelakklrpgyr 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 579 ------------------------VREELKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAESK 634
Cdd:TIGR02168 647 ivtldgdlvrpggvitggsaktnsSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSR 726
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 635 QLNVYEIKVNKLELELESAKQKFGEITDTYQKEIEDKKISEENLLEEVEKAKVIADEAVKLQKEIDKrcqhkiaemvalM 714
Cdd:TIGR02168 727 QISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQ------------L 794
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 715 EKHKHQYDKIIEERDSELGLYKSKEQEQSSLRASLEIELSNLKAELLSVKKQLEIEREEKEKLKREAKENTATLKEKKDK 794
Cdd:TIGR02168 795 KEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESE 874
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
102-800 |
6.37e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.55 E-value: 6.37e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 102 LSRVYSKLYKEAEKIKKWKVSTEAELRQKESKLQENRKIIEAQRKAIQELqfgNEKVSLKLEEGIQENKDLIKENNATRH 181
Cdd:TIGR02169 228 LLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEEL---NKKIKDLGEEEQLRVKEKIGELEAEIA 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 182 LCN----LLKETCARSAEKTKKYEYEREETRQVYMDLNNNIE-------KMITAFEELRVQAENSRLEMH---FKLKEDY 247
Cdd:TIGR02169 305 SLErsiaEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEeerkrrdKLTEEYAELKEELEDLRAELEevdKEFAETR 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 248 EKIQHLEQE---YKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKEL 324
Cdd:TIGR02169 385 DELKDYREKlekLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADL 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 325 EDIKVSLQRSVSTQKALEEDLQIATKTICQLTEEKETQMEESNKARAAHSFVVTEFETTVCSLEELLRTEQQ-------- 396
Cdd:TIGR02169 465 SKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERyataieva 544
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 397 ---RLE----KNEDQLKILTMELqkKSSELEEMTKLTNNKEVELEELKKVLGEKETLLYE------NKQFEKI------- 456
Cdd:TIGR02169 545 agnRLNnvvvEDDAVAKEAIELL--KRRKAGRATFLPLNKMRDERRDLSILSEDGVIGFAvdlvefDPKYEPAfkyvfgd 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 457 ---------AEELKGT------EQELI---GLLQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTELENEKLKNTELTS 518
Cdd:TIGR02169 623 tlvvedieaARRLMGKyrmvtlEGELFeksGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIEN 702
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 519 HCNKLSLENKELTQETSdmtlELKNQQEDINnnkKQEERMLKQIENLQETETQLRNELEYVREELkqkrDEVKCKLDKSE 598
Cdd:TIGR02169 703 RLDELSQELSDASRKIG----EIEKEIEQLE---QEEEKLKERLEELEEDLSSLEQEIENVKSEL----KELEARIEELE 771
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 599 ENCNNLRKQVEN-----KNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKFGEITD----------T 663
Cdd:TIGR02169 772 EDLHKLEEALNDlearlSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEqridlkeqikS 851
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 664 YQKEIEDKKISEENLLEEVEKAKV----IADEAVKLQKEIDKR------CQHKIAEMVALMEKHKHQYD------KIIEE 727
Cdd:TIGR02169 852 IEKEIENLNGKKEELEEELEELEAalrdLESRLGDLKKERDELeaqlreLERKIEELEAQIEKKRKRLSelkaklEALEE 931
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 728 RDSELGLYKSKEQEQSSLRASLE---------------IELSNLKA--ELLSVKKQLEIEREEKEKLKREAKENTATLKE 790
Cdd:TIGR02169 932 ELSEIEDPKGEDEEIPEEELSLEdvqaelqrveeeiraLEPVNMLAiqEYEEVLKRLDELKEKRAKLEEERKAILERIEE 1011
|
810
....*....|
gi 1034561377 791 KKDKKTQTFL 800
Cdd:TIGR02169 1012 YEKKKREVFM 1021
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
106-687 |
7.23e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 63.16 E-value: 7.23e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 106 YSKLYKEAEKIKKWKVSTEAELRQKESKLQENRKIIEAQRKAIQELQFGNEKVSLKLEEGIQENKDLIKENNATRHLCNL 185
Cdd:PRK03918 181 LEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEK 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 186 LKETCARSAEKTKKYEYEREETRQVymdlnNNIEKMITAFEELRvqaensrlEMHFKLKEDYEKIQHLEQEYKKEINDKE 265
Cdd:PRK03918 261 IRELEERIEELKKEIEELEEKVKEL-----KELKEKAEEYIKLS--------EFYEEYLDELREIEKRLSRLEEEINGIE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 266 KQVSllliQITEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTK----ELEDIKVSLQRSVSTQKAL 341
Cdd:PRK03918 328 ERIK----ELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRltglTPEKLEKELEELEKAKEEI 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 342 EEDLQIATKTICQLTEEKETQMEESNKARAAHSFV-VTEFETTVCSLEELLRTE-------QQRLEKNEDQLKILTMELQ 413
Cdd:PRK03918 404 EEEISKITARIGELKKEIKELKKAIEELKKAKGKCpVCGRELTEEHRKELLEEYtaelkriEKELKEIEEKERKLRKELR 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 414 KKSSELEEMTKLTNNKEV--ELEELKKVLGE--KETLLYENKQFEKIAEELKGTEQELIGLLQaREKEVHDLEIQLTAIT 489
Cdd:PRK03918 484 ELEKVLKKESELIKLKELaeQLKELEEKLKKynLEELEKKAEEYEKLKEKLIKLKGEIKSLKK-ELEKLEELKKKLAELE 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 490 TSEQYYSKEVKDLKTELENE--------KLKNTELTSHCNK-LSLEN-----KELTQETSDMTLELKNQQEDINNNKKQE 555
Cdd:PRK03918 563 KKLDELEEELAELLKELEELgfesveelEERLKELEPFYNEyLELKDaekelEREEKELKKLEEELDKAFEELAETEKRL 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 556 ERMLKQIENL-----QETETQLRNELEYVREELKQKRDEVKC---KLDKSEENCNNLRKQVENKNKYIEELQQENKALKK 627
Cdd:PRK03918 643 EELRKELEELekkysEEEYEELREEYLELSRELAGLRAELEElekRREEIKKTLEKLKEELEEREKAKKELEKLEKALER 722
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1034561377 628 kgtaeskqLNVYEIKVNKLELEL-ESAKQKFGEITDTYQKEIEDKKISEENLLEEVEKAKV 687
Cdd:PRK03918 723 --------VEELREKVKKYKALLkERALSKVGEIASEIFEELTEGKYSGVRVKAEENKVKL 775
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
194-507 |
1.26e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.39 E-value: 1.26e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 194 AEKTKKYEYEREETRQVymdlNNNIEKMITAFEELRVQAEnsRLEMHFKLKEDYEKIQHLEQEYK-----KEINDKEKQV 268
Cdd:TIGR02169 166 AEFDRKKEKALEELEEV----EENIERLDLIIDEKRQQLE--RLRREREKAERYQALLKEKREYEgyellKEKEALERQK 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 269 SLLLIQITEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQ-SIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQI 347
Cdd:TIGR02169 240 EAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDlGEEEQLRVKEKIGELEAEIASLERSIAEKERELED 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 348 ATKTICQLTEE---KETQMEESNKARAAHSFVVTEFETTVCSLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEemtK 424
Cdd:TIGR02169 320 AEERLAKLEAEidkLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLE---K 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 425 LTNNKEVELEELKKVLGEKETLLYENKQFEKIAEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKT 504
Cdd:TIGR02169 397 LKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKE 476
|
...
gi 1034561377 505 ELE 507
Cdd:TIGR02169 477 EYD 479
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
214-726 |
5.13e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 60.03 E-value: 5.13e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 214 LNNNIEKMITAFEELRVQAENSRLEMHfKLKEDYEKIQHLEQEYKKEINDKEkqvsLLLIQITEKENKMKDLTFLLEESR 293
Cdd:TIGR04523 150 KEKELEKLNNKYNDLKKQKEELENELN-LLEKEKLNIQKNIDKIKNKLLKLE----LLLSNLKKKIQKNKSLESQISELK 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 294 DKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLTEE-KETQMEESNKARAA 372
Cdd:TIGR04523 225 KQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQlNQLKSEISDLNNQK 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 373 HSFVVTEFETTVCSLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVELEE----LKKVLGEKETLLY 448
Cdd:TIGR04523 305 EQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEkqneIEKLKKENQSYKQ 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 449 ENKQFEKIAEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTELENEKLKNTELTSHCNKLSLENK 528
Cdd:TIGR04523 385 EIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRE 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 529 ELTQETSDMTLELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELEYVRE-------------------ELKQKRDE 589
Cdd:TIGR04523 465 SLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKkisslkekieklesekkekESKISDLE 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 590 VKCKLDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKFGEITDTYqKEIE 669
Cdd:TIGR04523 545 DELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKEL-EKAK 623
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*..
gi 1034561377 670 DKKISEENLLEEVEKAKVIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIE 726
Cdd:TIGR04523 624 KENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKIDDIIE 680
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
355-656 |
6.03e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 60.34 E-value: 6.03e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 355 LTEEKETQMEE-SNKARAAHSFVVTEFETTVCSLEELLRteqqRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVEL 433
Cdd:COG1196 194 ILGELERQLEPlERQAEKAERYRELKEELKELEAELLLL----KLRELEAELEELEAELEELEAELEELEAELAELEAEL 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 434 EELKKVLGEKETLLyenkqfekiaEELKGTEQELI-------GLLQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTEL 506
Cdd:COG1196 270 EELRLELEELELEL----------EEAQAEEYELLaelarleQDIARLEERRRELEERLEELEEELAELEEELEELEEEL 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 507 ENEKLKNTELTSHCNKLSLENKELTQETSDMTLELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELEYV---REEL 583
Cdd:COG1196 340 EELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALlerLERL 419
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1034561377 584 KQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQK 656
Cdd:COG1196 420 EEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAAR 492
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
224-797 |
9.42e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 59.77 E-value: 9.42e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 224 AFEELRVQAENSRLEMHFKLKEDY---EKIQHLEQEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESR--DKVNQ 298
Cdd:PTZ00121 1092 ATEEAFGKAEEAKKTETGKAEEARkaeEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARkaEEARK 1171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 299 LEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLTEEKETQMEESNKARAAHSFVVT 378
Cdd:PTZ00121 1172 AEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNN 1251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 379 EFETTVCSLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVEleELKKVLGEK---ETLLYENKQFEK 455
Cdd:PTZ00121 1252 EEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKAD--EAKKKAEEAkkaDEAKKKAEEAKK 1329
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 456 IAEELKGTEQEligllQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTELENEKLKNTELTSHCNKLSLENKELTQETS 535
Cdd:PTZ00121 1330 KADAAKKKAEE-----AKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDK 1404
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 536 DMTLELKNQQED----------INNNKKQEERMLKQIENLQETETQLRNELEYVREELKQKRDEVKcKLDKSEENCNNLR 605
Cdd:PTZ00121 1405 KKADELKKAAAAkkkadeakkkAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAK-KADEAKKKAEEAK 1483
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 606 KQVENKNKyIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKfgEITDTYQKEIEDKKISEENLLEEVEKA 685
Cdd:PTZ00121 1484 KADEAKKK-AEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEA--KKADEAKKAEEKKKADELKKAEELKKA 1560
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 686 KVIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKSKEQEQSSLRASLEIELSNLKAELLSVKK 765
Cdd:PTZ00121 1561 EEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKK 1640
|
570 580 590
....*....|....*....|....*....|..
gi 1034561377 766 QLEIEREEKEKLKREAKENTATLKEKKDKKTQ 797
Cdd:PTZ00121 1641 KEAEEKKKAEELKKAEEENKIKAAEEAKKAEE 1672
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
387-701 |
1.88e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.54 E-value: 1.88e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 387 LEELLRTEQqRLEKNEDQLKILTMELQKKSSELEEMTKLTN-NKEVELEELKKVLGEKETLLYENKQFEKIAEELKGTEQ 465
Cdd:TIGR02169 176 LEELEEVEE-NIERLDLIIDEKRQQLERLRREREKAERYQAlLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 466 ELIGLLQAREKEVHDLEIQLTAIT------TSEQY--YSKEVKDLKTELENEKLKNTELTSHCNKLSLENKELTQETSDM 537
Cdd:TIGR02169 255 KLTEEISELEKRLEEIEQLLEELNkkikdlGEEEQlrVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKL 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 538 TLELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELEYVREELKQKRDEVKckldKSEENCNNLRKQVENKNKYIEE 617
Cdd:TIGR02169 335 LAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELK----DYREKLEKLKREINELKRELDR 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 618 LQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKFGEITDTYQKEIEDKKISEENLLEEVEKAKVIADEAVKLQK 697
Cdd:TIGR02169 411 LQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQR 490
|
....
gi 1034561377 698 EIDK 701
Cdd:TIGR02169 491 ELAE 494
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
141-797 |
2.69e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.16 E-value: 2.69e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 141 IEAQRKAIQELQFGNEKVSLKLEEGIQENKDLIKE-NNATRHLCNLLKETCARSAEKTKKYEYEREETRQVYMDLNNnIE 219
Cdd:TIGR02169 172 KEKALEELEEVEENIERLDLIIDEKRQQLERLRRErEKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLAS-LE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 220 KMITAFEELRVQAENSRLEMHFKLKEDYEKIQHLEQE----YKKEINDKEKQVSLLLIQITEKENKMKDLtfllEESRDK 295
Cdd:TIGR02169 251 EELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEeqlrVKEKIGELEAEIASLERSIAEKERELEDA----EERLAK 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 296 VNQLEEKTKLQSENLKQSIEKQH------------------HLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLTE 357
Cdd:TIGR02169 327 LEAEIDKLLAEIEELEREIEEERkrrdklteeyaelkeeleDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKR 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 358 EKETQMEESNKARAAHSFV----------VTEFETTVCSLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKLTN 427
Cdd:TIGR02169 407 ELDRLQEELQRLSEELADLnaaiagieakINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELS 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 428 NKEVELEELKKVLGEKETLLYENKQFEKIAEE-LKGTEQELIGLLQAREKEVHDLEI----QLTAITTSEQYYSKE---- 498
Cdd:TIGR02169 487 KLQRELAEAEAQARASEERVRGGRAVEEVLKAsIQGVHGTVAQLGSVGERYATAIEVaagnRLNNVVVEDDAVAKEaiel 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 499 VKDLK----TELENEKLKNTELTSHCNKL--------------------------------SLE--------------NK 528
Cdd:TIGR02169 567 LKRRKagraTFLPLNKMRDERRDLSILSEdgvigfavdlvefdpkyepafkyvfgdtlvveDIEaarrlmgkyrmvtlEG 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 529 ELTQETSDMT---LELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELEYVREELKQKRDEVK----------CKLD 595
Cdd:TIGR02169 647 ELFEKSGAMTggsRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSdasrkigeieKEIE 726
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 596 KSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELES-----AKQKFGEITDTYQK---- 666
Cdd:TIGR02169 727 QLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDlearlSHSRIPEIQAELSKleee 806
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 667 --EIEDKKISEENLLEEVEKAKVIADEAVKLQKEIDKRCQHKIAEmvalMEKHKHQYDKIIEERDSELGLYKSKEQEQSS 744
Cdd:TIGR02169 807 vsRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKS----IEKEIENLNGKKEELEEELEELEAALRDLES 882
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|...
gi 1034561377 745 LRASLEIELSNLKAELLSVKKQLEIEREEKEKLKREAKENTATLKEKKDKKTQ 797
Cdd:TIGR02169 883 RLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSE 935
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
106-775 |
2.74e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.16 E-value: 2.74e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 106 YSKLYKEAEKIKKW-----KVSTEAELRQKESKLQENRKIIEAQRKAIQE-----------LQFGNEKVSLKLEEGIQEN 169
Cdd:TIGR02169 213 YQALLKEKREYEGYellkeKEALERQKEAIERQLASLEEELEKLTEEISElekrleeieqlLEELNKKIKDLGEEEQLRV 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 170 KDLIKENNATRHLCN----LLKETCARSAEKTKKYEYEREETRQVYMDLNNNIE-------KMITAFEELRVQAENSRLE 238
Cdd:TIGR02169 293 KEKIGELEAEIASLErsiaEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEeerkrrdKLTEEYAELKEELEDLRAE 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 239 MH---FKLKEDYEKIQHLEQE---YKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQ 312
Cdd:TIGR02169 373 LEevdKEFAETRDELKDYREKlekLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKK 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 313 SIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLTEEKETQMEESNKARAAHSFVVTEFETTVCSLEELLR 392
Cdd:TIGR02169 453 QEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGS 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 393 TEQQ-----------RLE----KNEDQLKILTMELqkKSSELEEMTKLTNNKEVELEELKKVLGEKETLLYE------NK 451
Cdd:TIGR02169 533 VGERyataievaagnRLNnvvvEDDAVAKEAIELL--KRRKAGRATFLPLNKMRDERRDLSILSEDGVIGFAvdlvefDP 610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 452 QFEKI----------------AEELKGT------EQELI---GLLQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTEL 506
Cdd:TIGR02169 611 KYEPAfkyvfgdtlvvedieaARRLMGKyrmvtlEGELFeksGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKREL 690
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 507 ENEKLKNTELTSHCNKLSLENKELTQETSdmtlELKNQQEDINnnkKQEERMLKQIENLQETETQLRNELEYVREELkqk 586
Cdd:TIGR02169 691 SSLQSELRRIENRLDELSQELSDASRKIG----EIEKEIEQLE---QEEEKLKERLEELEEDLSSLEQEIENVKSEL--- 760
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 587 rDEVKCKLDKSEENCNNLRKQVEN-----KNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKFGEIT 661
Cdd:TIGR02169 761 -KELEARIEELEEDLHKLEEALNDlearlSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQ 839
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 662 DtYQKEIEDKKISEENLLEEVEKAKviadeavklqKEIDKRCQHKIAEMVALMEKHKHqYDKIIEERDSELGLYKSKEQE 741
Cdd:TIGR02169 840 E-QRIDLKEQIKSIEKEIENLNGKK----------EELEEELEELEAALRDLESRLGD-LKKERDELEAQLRELERKIEE 907
|
730 740 750
....*....|....*....|....*....|....*
gi 1034561377 742 QSSLRASLEIELSNLKAELLSVKKQL-EIEREEKE 775
Cdd:TIGR02169 908 LEAQIEKKRKRLSELKAKLEALEEELsEIEDPKGE 942
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
222-749 |
3.31e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 57.74 E-value: 3.31e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 222 ITAFEELRVQAENSRLEMHFKLKEDYEKIQHLEqEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKVNQLEE 301
Cdd:PRK02224 222 IERYEEQREQARETRDEADEVLEEHEERREELE-TLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLA 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 302 KTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLTE---EKETQMEESNKARAAHSFVVT 378
Cdd:PRK02224 301 EAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEEraeELREEAAELESELEEAREAVE 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 379 EFETTVCSLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVELEELKKVLGEKETLLYENKQFEkIAE 458
Cdd:PRK02224 381 DRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPE-CGQ 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 459 ELKGTEQelIGLLQAREKEVHDLEIQLTAITTseqyyskEVKDLKTELEN-EKLKNTEltSHCNKLSLENKELTQETSDM 537
Cdd:PRK02224 460 PVEGSPH--VETIEEDRERVEELEAELEDLEE-------EVEEVEERLERaEDLVEAE--DRIERLEERREDLEELIAER 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 538 TLELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELEYVREELK---QKRDEVKCKLDkSEENCNNLRKQVENKNKY 614
Cdd:PRK02224 529 RETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAelnSKLAELKERIE-SLERIRTLLAAIADAEDE 607
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 615 IEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKqkfgeitdtYQKEIEDKKISEENLLEEVEKAKVIADEAVK 694
Cdd:PRK02224 608 IERLREKREALAELNDERRERLAEKRERKRELEAEFDEAR---------IEEAREDKERAEEYLEQVEEKLDELREERDD 678
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*....
gi 1034561377 695 LQKEIDKrCQHKIAEMVALMEKHKHqydkiIEERDSEL-GLYKSKEQEQSS---LRASL 749
Cdd:PRK02224 679 LQAEIGA-VENELEELEELRERREA-----LENRVEALeALYDEAEELESMygdLRAEL 731
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
289-610 |
3.48e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.76 E-value: 3.48e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 289 LEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLTEEKETQMEESNK 368
Cdd:TIGR02168 679 IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTE 758
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 369 araahsfvvtefettvcsLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVELEELKKVLGEKETLLY 448
Cdd:TIGR02168 759 ------------------LEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAA 820
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 449 ENKQ-FEKIAEELKGTEQELIGLLQAREKEVHDLEI---QLTAITTSEQYYSKEVKDLKTELENEKLKNTELTSHCNKLS 524
Cdd:TIGR02168 821 NLRErLESLERRIAATERRLEDLEEQIEELSEDIESlaaEIEELEELIEELESELEALLNERASLEEALALLRSELEELS 900
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 525 LENKELTQETSDMTLELKNQQEDINNNKKQEERMLKQIENLQEtetQLRNELEYVREELKQKRDEVKCKLDKSEENCNNL 604
Cdd:TIGR02168 901 EELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE---RLSEEYSLTLEEAEALENKIEDDEEEARRRLKRL 977
|
....*.
gi 1034561377 605 RKQVEN 610
Cdd:TIGR02168 978 ENKIKE 983
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
235-782 |
3.89e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 57.38 E-value: 3.89e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 235 SRLEMHFKLKEDYEKIQHLEQEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKVNQLEEktklqsenLKQSI 314
Cdd:PRK03918 221 EELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKE--------LKEKA 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 315 EKQHHLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLtEEKETQMEESNKARAAHSFVVTEFETTVCSLEElLRTE 394
Cdd:PRK03918 293 EEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKEL-EEKEERLEELKKKLKELEKRLEELEERHELYEE-AKAK 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 395 QQRLEKNEDQLKILTMELQKKsseleEMTKLTNNKEVELEELKKVLGEKETLLYENKQFEKIAEELKGTEQElIGLLQAR 474
Cdd:PRK03918 371 KEELERLKKRLTGLTPEKLEK-----ELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGK-CPVCGRE 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 475 EKEVHDLEIQltaittseQYYSKEVKDLKTELeneklknteltshcnklslenKELTQETSDMTLELKNQQEDINNNKK- 553
Cdd:PRK03918 445 LTEEHRKELL--------EEYTAELKRIEKEL---------------------KEIEEKERKLRKELRELEKVLKKESEl 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 554 -QEERMLKQIENLQETETqlrnelEYVREELKQKRDEvkckLDKSEENCNNLRKQVENKNKYIEELQQENKAL----KKK 628
Cdd:PRK03918 496 iKLKELAEQLKELEEKLK------KYNLEELEKKAEE----YEKLKEKLIKLKGEIKSLKKELEKLEELKKKLaeleKKL 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 629 GTAESKQLNVYEIKVNKLELELESAKQKFGEITDTYQKEIEDKKiSEENLLEEVEKAKVIADEAVKLQKEIDKRcQHKIA 708
Cdd:PRK03918 566 DELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKD-AEKELEREEKELKKLEEELDKAFEELAET-EKRLE 643
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1034561377 709 EMVALMEKHKHQYDKiiEERDSELGLYKSKEQEQSSLRASLEiELSNLKAELLSVKKQLEIEREEKEKLKREAK 782
Cdd:PRK03918 644 ELRKELEELEKKYSE--EEYEELREEYLELSRELAGLRAELE-ELEKRREEIKKTLEKLKEELEEREKAKKELE 714
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
106-806 |
1.06e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 56.30 E-value: 1.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 106 YSKLYKEAEKIKKwkvsTEAELRQKESKLQENRKIIEAQRKaIQELQFGNEkvSLKLEEGIQENKDliKENNATRHLCNL 185
Cdd:PTZ00121 1093 TEEAFGKAEEAKK----TETGKAEEARKAEEAKKKAEDARK-AEEARKAED--ARKAEEARKAEDA--KRVEIARKAEDA 1163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 186 LKETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMITAFEELRvqAENSRLEMHFKLKEDYEKIQHLE--QEYKKEIND 263
Cdd:PTZ00121 1164 RKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARK--AEEERKAEEARKAEDAKKAEAVKkaEEAKKDAEE 1241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 264 KEKQVSlllIQITEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEE 343
Cdd:PTZ00121 1242 AKKAEE---ERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKAD 1318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 344 DLQIATKTICQLTEEKETQMEESNKARAAHSFVVTEFETTVCSLEEllRTEQQRLEKNEDQLKilTMELQKKSSEL---E 420
Cdd:PTZ00121 1319 EAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEE--KAEAAEKKKEEAKKK--ADAAKKKAEEKkkaD 1394
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 421 EMTKLTNNKEVELEELKKVLGEKETLLYENKQFEKI--AEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQYYSKE 498
Cdd:PTZ00121 1395 EAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKkkADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADE 1474
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 499 VKdlKTELENEKLKNTELTSHCNKLSLENKELTQETSDMTLELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELEY 578
Cdd:PTZ00121 1475 AK--KKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELK 1552
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 579 VREELKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQEN--KALKKKGTAESKQLNVYEIKVNKLElELESAKQK 656
Cdd:PTZ00121 1553 KAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEvmKLYEEEKKMKAEEAKKAEEAKIKAE-ELKKAEEE 1631
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 657 FGEITDTYQKEIEDKKISEEnLLEEVEKAKVIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYK 736
Cdd:PTZ00121 1632 KKKVEQLKKKEAEEKKKAEE-LKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKK 1710
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 737 SKEQEQSSLRASLEIELSNLKAELLSVKKQLEIEREEKEKLKREAKENTATLKEKKDKKTQTFLLETPEI 806
Cdd:PTZ00121 1711 EAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAV 1780
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
395-633 |
1.16e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.16 E-value: 1.16e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 395 QQRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVELEELKKVLGEKETLLYE-NKQFEKIAEELKGTEQELIGLLQA 473
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRAlEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 474 REKEVHDLEIQLTAITTSEQYYSKEVKdLKTELENEKLKNTELTshcnklslenKELTQETSDMTLELKNQQEDINNNKK 553
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALL-LSPEDFLDAVRRLQYL----------KYLAPARREQAEELRADLAELAALRA 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 554 QEERMLKQIENLQETETQLRNELEYVREELKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAES 633
Cdd:COG4942 168 ELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAG 247
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
287-632 |
1.18e-07 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 56.00 E-value: 1.18e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 287 FLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQiatkticQLTEEKETQMEES 366
Cdd:pfam12128 597 ASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLR-------RLFDEKQSEKDKK 669
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 367 NKARAAH-SFVVTEFETTVCSLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKltnnkeVELEELKKVLGEKET 445
Cdd:pfam12128 670 NKALAERkDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALD------AQLALLKAAIAARRS 743
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 446 LLyenkqfekiAEELKGTEQELIGLLQAR---EKEVHDLEiqlTAITTSEQYYSKEVKDLKTELENEKLKNTELTSHCNK 522
Cdd:pfam12128 744 GA---------KAELKALETWYKRDLASLgvdPDVIAKLK---REIRTLERKIERIAVRRQEVLRYFDWYQETWLQRRPR 811
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 523 LSLENKELTQETSDMTLELKNQQEDINNNKKQEERMLKQIENLQ----ETETQLRNELEYVRE-----ELKQKRDEVKCK 593
Cdd:pfam12128 812 LATQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQvrlsENLRGLRCEMSKLATlkedaNSEQAQGSIGER 891
|
330 340 350
....*....|....*....|....*....|....*....
gi 1034561377 594 LDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAE 632
Cdd:pfam12128 892 LAQLEDLKLKRDYLSESVKKYVEHFKNVIADHSGSGLAE 930
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
108-671 |
1.73e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 55.41 E-value: 1.73e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 108 KLYKEAEKIKKWKVSTEAELRQKESKLQENRKIIEAQR---KAIQELQFGNEKVSLKLEEGIQENKDLIKENNATRHLCN 184
Cdd:TIGR04523 177 LLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKsleSQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLN 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 185 LLKETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMITAFEELRVQAENsrlEMHFKLKEDYEKIQHLEQEYKKEINDK 264
Cdd:TIGR04523 257 QLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQ---DWNKELKSELKNQEKKLEEIQNQISQN 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 265 EKQVSLLLIQITEKENKMKDLTfllEESRDKVNQLEEKTKlQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEED 344
Cdd:TIGR04523 334 NKIISQLNEQISQLKKELTNSE---SENSEKQRELEEKQN-EIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQ 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 345 LQIATKTICQLTEEKETQMEESNKARAAHSFVVTEFETTVCSLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTK 424
Cdd:TIGR04523 410 KDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQK 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 425 LTNNKEVELEELKKvlgEKETLLYENKQFEKIAEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQY--YSKEVKDL 502
Cdd:TIGR04523 490 ELKSKEKELKKLNE---EKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKenLEKEIDEK 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 503 KTELENEKLKNTELTSHCNKLSLENKELTQETSDMTLELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELEYVREE 582
Cdd:TIGR04523 567 NKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQE 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 583 LKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQENKAL----KKKGTAESKQLNVYEIKVNKLELELESAK-QKF 657
Cdd:TIGR04523 647 VKQIKETIKEIRNKWPEIIKKIKESKTKIDDIIELMKDWLKELslhyKKYITRMIRIKDLPKLEEKYKEIEKELKKlDEF 726
|
570
....*....|....
gi 1034561377 658 GEITDTYQKEIEDK 671
Cdd:TIGR04523 727 SKELENIIKNFNKK 740
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
615-798 |
2.13e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.38 E-value: 2.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 615 IEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKFGEITDTYQkEIEDKKISEENLLEEVEKakviadEAVK 694
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIR-ALEQELAALEAELAELEK------EIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 695 LQKEIDKRcQHKIAEMVALMEKH-KHQYDKIIEERDSELGLYKSKE--QEQSSLRASLEIELSNLKAELLSVKKQLEIER 771
Cdd:COG4942 95 LRAELEAQ-KEELAELLRALYRLgRQPPLALLLSPEDFLDAVRRLQylKYLAPARREQAEELRADLAELAALRAELEAER 173
|
170 180
....*....|....*....|....*..
gi 1034561377 772 EEKEKLKREAKENTATLKEKKDKKTQT 798
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKL 200
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
570-783 |
2.84e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.00 E-value: 2.84e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 570 TQLRNELEYVREELKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELE 649
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 650 LESAKQKFGEITDTYQKEIEDKKI----SEENLLEEVEKAKVIADEAVKLQKEID--KRCQHKIAEMVALMEKHKHQYDK 723
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLalllSPEDFLDAVRRLQYLKYLAPARREQAEelRADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 724 IIEERDSELGLYKSKEQEQSSLRASLEIELSNLKAELLSVKKQLEIEREEKEKLKREAKE 783
Cdd:COG4942 179 LLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
124-618 |
4.12e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.17 E-value: 4.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 124 EAELRQKESKLQENRKIIEAQRKAIQELQFGNEKVSLKLEEGIQENKDLIKENNATRHLCNLLKETCARSAEKTKKYEYE 203
Cdd:COG1196 245 EAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEE 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 204 REETRQVYMDLNNNIEKMITAFEELRVQAENSRLEMHfKLKEDYEKIQHLEQEYKKEINDKEKQVSLLLIQITEKENKMK 283
Cdd:COG1196 325 LAELEEELEELEEELEELEEELEEAEEELEEAEAELA-EAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLE 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 284 DLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLTEEKETQM 363
Cdd:COG1196 404 ELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELL 483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 364 EESNKARAAHSF------------------------------------VVTEFETTVcsLEELLRTEQQRLEKNEDQLKI 407
Cdd:COG1196 484 EELAEAAARLLLlleaeadyegflegvkaalllaglrglagavavligVEAAYEAAL--EAALAAALQNIVVEDDEVAAA 561
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 408 LTMELQKK--------SSELEEMTKLTNNKEVELEELKKVLGEKETLLYENKQFEKIAEELKGTEQELIGLLQAREKEV- 478
Cdd:COG1196 562 AIEYLKAAkagratflPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVt 641
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 479 --HDLEIQLTAITTSEQYYSKEVKDLKTELENEKLKNTELTshcnKLSLENKELTQETSDMTLELKNQQEDINNNKKQEE 556
Cdd:COG1196 642 laGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELE----ELAERLAEEELELEEALLAEEEEERELAEAEEERL 717
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1034561377 557 RMLKQIENLQETETQLRNELEYVREELKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEEL 618
Cdd:COG1196 718 EEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
113-683 |
4.95e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 53.89 E-value: 4.95e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 113 AEKIKKWKVSTEAELRQKESKLQENRKIIEAQRKAIQELQfgnekvslkleegiQENKDLIKENNATRHLCNLLKETCAR 192
Cdd:PRK02224 197 EEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETR--------------DEADEVLEEHEERREELETLEAEIED 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 193 SAEKTKKYEYEREETRQVYMDLNNNIEKMITAFEELRVQAENSRLEmhfklKEDYEKIQHLEQEYKKEINDKEKQVSLll 272
Cdd:PRK02224 263 LRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDAD-----AEAVEARREELEDRDEELRDRLEECRV-- 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 273 iQITEKENKMKDLtflleesRDKVNQLEEktklQSENLKqsiEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQIATKTI 352
Cdd:PRK02224 336 -AAQAHNEEAESL-------REDADDLEE----RAEELR---EEAAELESELEEAREAVEDRREEIEELEEEIEELRERF 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 353 CQLTEEKETQMEESNKARAAHSFVVTEfettVCSLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVE 432
Cdd:PRK02224 401 GDAPVDLGNAEDFLEELREERDELRER----EAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRER 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 433 LEELKKVLGEKETLLYENKQFEKIAEELKGTEQELIGLLQAREKEVHDLEIQLTAI-TTSEQYYS--KEVKDLKTELENE 509
Cdd:PRK02224 477 VEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIeEKRERAEElrERAAELEAEAEEK 556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 510 KLKNTELTSHCNKLSLENKELTQETSDMTLELKN------QQEDINNNKKQEERMLKQIENLQETETQLRNELEYVREEL 583
Cdd:PRK02224 557 REAAAEAEEEAEEAREEVAELNSKLAELKERIESlerirtLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERK 636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 584 KQKRDEVkckldkSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEikvNKLElELESAKQKfgeitdt 663
Cdd:PRK02224 637 RELEAEF------DEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVE---NELE-ELEELRER------- 699
|
570 580
....*....|....*....|
gi 1034561377 664 yQKEIEDKKISEENLLEEVE 683
Cdd:PRK02224 700 -REALENRVEALEALYDEAE 718
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
256-802 |
1.07e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 52.66 E-value: 1.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 256 EYKKEINDKEKQVSLLLIQITEKENK-----MKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVS 330
Cdd:TIGR00618 297 AHIKAVTQIEQQAQRIHTELQSKMRSrakllMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHT 376
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 331 LQRSVSTQK----ALEEDLQIATKTICQLTEEKETQMEESNKARAAHSFVVTEFETTVCSLEELlRTEQQRLEKNEDQLK 406
Cdd:TIGR00618 377 LTQHIHTLQqqktTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYA-ELCAAAITCTAQCEK 455
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 407 ILTMELQKKSSELEEMTKLTNNKEVELEELKKVlgeketllyeNKQFEKIAEELKGTEQELIGllQAREKEVHDLEIQLT 486
Cdd:TIGR00618 456 LEKIHLQESAQSLKEREQQLQTKEQIHLQETRK----------KAVVLARLLELQEEPCPLCG--SCIHPNPARQDIDNP 523
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 487 AITTSE-QYYSKEVKDLKTELENEKLKNTELTSHCNKLSLENKELTQETSDMTLELKNQQEDINNNKKQEERMLKQIENL 565
Cdd:TIGR00618 524 GPLTRRmQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKL 603
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 566 QETETQLRNELEYVREELKQKRDEVKCKLdkSEENC-NNLRKQVENKNKYIEELQQENKALKKKGTAESKQLnvYEIKVN 644
Cdd:TIGR00618 604 SEAEDMLACEQHALLRKLQPEQDLQDVRL--HLQQCsQELALKLTALHALQLTLTQERVREHALSIRVLPKE--LLASRQ 679
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 645 KLELELESAKQKFgeitdTYQKEIEDKKISEENLLEEVEKakviadEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKI 724
Cdd:TIGR00618 680 LALQKMQSEKEQL-----TYWKEMLAQCQTLLRELETHIE------EYDREFNEIENASSSLGSDLAAREDALNQSLKEL 748
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1034561377 725 IEERDSELGlYKSKEQEQSSLRASLEIELSnlkAELLSVKKQLEIEREEKEKLKREAKENTATLKEKKDKKTQTFLLE 802
Cdd:TIGR00618 749 MHQARTVLK-ARTEAHFNNNEEVTAALQTG---AELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQ 822
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
249-799 |
1.49e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 52.43 E-value: 1.49e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 249 KIQHLEQEYKKEINDKEKQVSLLLIQITEKENKMKDLTfllEESRDKVNQLEEK-TKLQSENLKQSIEKQH--------- 318
Cdd:pfam15921 332 ELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFS---QESGNLDDQLQKLlADLHKREKELSLEKEQnkrlwdrdt 408
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 319 -------HLTKELEDIKVSLQRSVSTQKALEEDLQiatkticQLTEEKETQMEESNKARAAHSFVVTEFETTVCSLE--- 388
Cdd:pfam15921 409 gnsitidHLRRELDDRNMEVQRLEALLKAMKSECQ-------GQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRkvv 481
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 389 ELLRTEQQRLEKNEDQLKILTMELQKKSSELE----EMTKLTNNKEVELEELKKVLGEKETLlyENKQFEKIAEELKGTE 464
Cdd:pfam15921 482 EELTAKKMTLESSERTVSDLTASLQEKERAIEatnaEITKLRSRVDLKLQELQHLKNEGDHL--RNVQTECEALKLQMAE 559
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 465 QE-LIGLLQAREKEVHDLEIQLTAITTSEQYyskEVKDLKTELENEKLKNTELTSHCNKLSLENKELTQETSDMTLElkn 543
Cdd:pfam15921 560 KDkVIEILRQQIENMTQLVGQHGRTAGAMQV---EKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELE--- 633
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 544 QQEDINNNKKQeermLKQIENLQETETQLRNELEYVREELKQkrdevkckldkseencnnlrkqvenknkyieeLQQENK 623
Cdd:pfam15921 634 KVKLVNAGSER----LRAVKDIKQERDQLLNEVKTSRNELNS--------------------------------LSEDYE 677
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 624 ALKKKGTAESKQLnvyEIKVNKLELELESAkqkfgeitdtyQKEIEDKKiseeNLLEEVEKAKviaDEAVKLQKEIDKRC 703
Cdd:pfam15921 678 VLKRNFRNKSEEM---ETTTNKLKMQLKSA-----------QSELEQTR----NTLKSMEGSD---GHAMKVAMGMQKQI 736
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 704 QHKIAEMVALMEKhkhqyDKIIEERDSELGLYKSKEQEQSSlraSLEIELSNLKAELLSVKKQLEIEREEKEKLkreaKE 783
Cdd:pfam15921 737 TAKRGQIDALQSK-----IQFLEEAMTNANKEKHFLKEEKN---KLSQELSTVATEKNKMAGELEVLRSQERRL----KE 804
|
570
....*....|....*.
gi 1034561377 784 NTATLKEKKDKKTQTF 799
Cdd:pfam15921 805 KVANMEVALDKASLQF 820
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
124-510 |
2.30e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.98 E-value: 2.30e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 124 EAELRQKESKLQENRKIIEAQRKAIQELQfgnekvslkleegiQENKDLIKENNATRHLCNLLKETCARsaektkkyeye 203
Cdd:TIGR02168 683 EEKIEELEEKIAELEKALAELRKELEELE--------------EELEQLRKELEELSRQISALRKDLAR----------- 737
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 204 REETRQVYMDLNNNIEKMITAFEELRVQAENSRLEMHFKLKEDYEKIQHLEQEYKKEINDkekqvsllliqitekenkmk 283
Cdd:TIGR02168 738 LEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEE-------------------- 797
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 284 dltflLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQIATKTIcqltEEKETQM 363
Cdd:TIGR02168 798 -----LKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEI----EELEELI 868
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 364 EESNKARAAHSFVVTEFETTVCSLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVELEELKKVLGEK 443
Cdd:TIGR02168 869 EELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEE 948
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 444 ETLLYEN--KQFEKIAEELKGTEQELIGLlqarEKEVHDL-EIQLTAIttsEQYysKEVKDLKTELENEK 510
Cdd:TIGR02168 949 YSLTLEEaeALENKIEDDEEEARRRLKRL----ENKIKELgPVNLAAI---EEY--EELKERYDFLTAQK 1009
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
89-808 |
4.13e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 51.13 E-value: 4.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 89 EGLKDSDLENSEGLSRVYSKLYKEAEKIKKWKVSTEAELRQKESKLQENRKIIEAQRKAIQELQFGNEKVSLKLEEGIQE 168
Cdd:pfam02463 306 ERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESER 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 169 NKDLIKENNATRHLCNLLKETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMITAFEELRVQAENSRLEMHFKLKEDYE 248
Cdd:pfam02463 386 LSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDEL 465
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 249 KIQHLEQEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHH-LTKELEDI 327
Cdd:pfam02463 466 ELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVaVENYKVAI 545
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 328 KVSLQRSVSTQKALEEDLQIATKTICQLTEEKETQMEESNKARAAHSFVVTEFETTVCSLEELLRTEQQRLEKNEDQLKI 407
Cdd:pfam02463 546 STAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVV 625
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 408 LTMELQKKSSELEEMTKLTNNKEVELEELKKVLGEKETLLYENKQFEKIAEELKGTEQELIGLLQAREKEVHDLEIQLTA 487
Cdd:pfam02463 626 EGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKE 705
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 488 ITTSEQYYSKEVKDLKTELENEKLKNTELTSHCNKLSLENKELTQETSDMTLELKNQQEDINNNKKQEERMLKQIENlQE 567
Cdd:pfam02463 706 QREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREK-TE 784
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 568 TETQLRNELEYVREELKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLE 647
Cdd:pfam02463 785 KLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEIT 864
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 648 LELESAKQKFGEITDTYQKEIEDKKISEENLLEEVEKAKVIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEE 727
Cdd:pfam02463 865 KEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEE 944
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 728 RDSELGLYKS-KEQEQSSLRASLEIELSNLKAELLSVKKQLEIEREEKEKLKRE-AKENTATLKEKKDKKTQTFLLETPE 805
Cdd:pfam02463 945 ADEKEKEENNkEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKErLEEEKKKLIRAIIEETCQRLKEFLE 1024
|
...
gi 1034561377 806 IYW 808
Cdd:pfam02463 1025 LFV 1027
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
88-684 |
4.43e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.91 E-value: 4.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 88 QEGLKDSDLENSEGLSRVYSKLYKEAEKIKKWKVSTEAELRQKESKLQENRKIIEAQRKAIQELQFGNEKVSLKLEEGIQ 167
Cdd:PTZ00121 1299 EEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKK 1378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 168 ENKDLIKENNATRHLCNLLK--ETCARSAEKTKKYEYEREETRQvymdLNNNIEKMITAfEELRVQAENSRLEMhfKLKE 245
Cdd:PTZ00121 1379 KADAAKKKAEEKKKADEAKKkaEEDKKKADELKKAAAAKKKADE----AKKKAEEKKKA-DEAKKKAEEAKKAD--EAKK 1451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 246 DYEKIQHLEQEYKKEindKEKQVSLLLIQITEKENKMKDLTFLLEESRDKVNQL----EEKTKLQSENLKQSIEKQHHLT 321
Cdd:PTZ00121 1452 KAEEAKKAEEAKKKA---EEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAkkaaEAKKKADEAKKAEEAKKADEAK 1528
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 322 KELEDIKVSLQRSVSTQKALE-----EDLQIA--TKTICQLTEEKETQMEESNKARAAHSFVVTEFETTVCSLEELLRTE 394
Cdd:PTZ00121 1529 KAEEAKKADEAKKAEEKKKADelkkaEELKKAeeKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMK 1608
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 395 QQRLEKNEDQlKILTMELQKKSSELEEMTKLTNNKEVELEELKKVLGEKETLLYENKQFEKIAEELKGTEQELIGLLQAR 474
Cdd:PTZ00121 1609 AEEAKKAEEA-KIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDE 1687
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 475 EKEVHDLEiqltaittSEQYYSKEVKDLKTELENEKLKNTELtshcNKLSLENKELTQETSDMTLELKNQQEDINNNKKQ 554
Cdd:PTZ00121 1688 KKAAEALK--------KEAEEAKKAEELKKKEAEEKKKAEEL----KKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEE 1755
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 555 EERMLKQIENLQETETQLRNELEYV-REELKQK----RDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQ-ENKALKKK 628
Cdd:PTZ00121 1756 KKKIAHLKKEEEKKAEEIRKEKEAViEEELDEEdekrRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEmEDSAIKEV 1835
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 629 GTAESKQLN----VYEIKVNKLELELESAKQKFGEITDTYQKEIEDKKISEENLLEEVEK 684
Cdd:PTZ00121 1836 ADSKNMQLEeadaFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADEIEKIDK 1895
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
124-469 |
5.14e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.83 E-value: 5.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 124 EAELRQKESKLQENRKIIEAQRKAIQELQFGNEKVSLKLEEGIQENKDLIKENNATRHLCNLLKETCARSAEKTKKYEYE 203
Cdd:TIGR02168 704 RKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAE 783
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 204 REETRQVYMDLNNNIEKMITAFEELRVQAENsrlemhfkLKEDYEKIQHLEQEYKKEINDKEKQVSLLLIQITEKENKMK 283
Cdd:TIGR02168 784 IEELEAQIEQLKEELKALREALDELRAELTL--------LNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIE 855
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 284 DLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLTEEKE--T 361
Cdd:TIGR02168 856 SLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEglE 935
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 362 QMEESNKARAAHSFVVT-----EFETTVCSLEELLRTEQQRLEKNEDQLKILTM----ELQKKSSELEEMTKLTNNKEVE 432
Cdd:TIGR02168 936 VRIDNLQERLSEEYSLTleeaeALENKIEDDEEEARRRLKRLENKIKELGPVNLaaieEYEELKERYDFLTAQKEDLTEA 1015
|
330 340 350
....*....|....*....|....*....|....*....
gi 1034561377 433 LEELKKVLGE--KETLLYENKQFEKIAEELKGTEQELIG 469
Cdd:TIGR02168 1016 KETLEEAIEEidREARERFKDTFDQVNENFQRVFPKLFG 1054
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
423-656 |
7.05e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.38 E-value: 7.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 423 TKLTNNKEVELEELKKVLGEKETLLYEN-KQFEKIAEELKGTEQELIgllqAREKEVHDLEIQLTAITTSEQYYSKEVKD 501
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALkKEEKALLKQLAALERRIA----ALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 502 LKTELENEKLKNTELTSHCNKLSLENKeltqetsdmtLELKNQQEDINNNKKQEERMLKQIENLQETETQLR---NELEY 578
Cdd:COG4942 95 LRAELEAQKEELAELLRALYRLGRQPP----------LALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRadlAELAA 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1034561377 579 VREELKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQK 656
Cdd:COG4942 165 LRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
258-795 |
9.43e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 49.63 E-value: 9.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 258 KKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVST 337
Cdd:TIGR04523 46 KNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVE 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 338 QKALEEDLQIATKTICQLTEEKETQMEESNKARAAHSFVVTEFEtTVCSLEELLRTEQQRLEKNEDQLKILTMELQKKSS 417
Cdd:TIGR04523 126 LNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKE-ELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLS 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 418 ELEEMTKLTNNKEVELEELKKVLGE-KETLLYENKQFEKIAEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQYYS 496
Cdd:TIGR04523 205 NLKKKIQKNKSLESQISELKKQNNQlKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIK 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 497 ---KEVKDLKTELENEKLKNTELTshcnklsleNKELTQETSDMTLELKNQQEDINNNKKQEERMLKQIENLQETETQLR 573
Cdd:TIGR04523 285 eleKQLNQLKSEISDLNNQKEQDW---------NKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSE 355
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 574 NELEYVREELKQKRDEV---KCKLDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELEL 650
Cdd:TIGR04523 356 SENSEKQRELEEKQNEIeklKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETI 435
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 651 ESAKQKFGEITDT---YQKEIEDKKISEENLLEEVEKAKVIADEAVKLQKEIDKRCQHKIAEMVALmEKHKHQYDKIIEE 727
Cdd:TIGR04523 436 IKNNSEIKDLTNQdsvKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKL-NEEKKELEEKVKD 514
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1034561377 728 RDSELGLYKSKEQEQSSLRASLEIELSNLKAELLSV-----KKQLEIEREEKEKLKREAKENTATLKEKKDKK 795
Cdd:TIGR04523 515 LTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDdfelkKENLEKEIDEKNKEIEELKQTQKSLKKKQEEK 587
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
276-791 |
1.22e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 49.40 E-value: 1.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 276 TEKENKMKDLTFLLEESRDKVNQLE-EKTKLQS--ENLKQSIEKQHHLTKELEDIKVSLQRSVstqKALEEDLQIATKTI 352
Cdd:pfam01576 71 QELEEILHELESRLEEEEERSQQLQnEKKKMQQhiQDLEEQLDEEEAARQKLQLEKVTTEAKI---KKLEEDILLLEDQN 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 353 CQLTEEKEtQMEESnkaraahsfvVTEFETTVCSLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVE 432
Cdd:pfam01576 148 SKLSKERK-LLEER----------ISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGE 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 433 LEELKKVLGEKETllyenkQFEKIAEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQYYSkevkDLKTELENEKLK 512
Cdd:pfam01576 217 STDLQEQIAELQA------QIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQIS----ELQEDLESERAA 286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 513 NTELTSHCNKLSLENKELTQETSDmTLELKNQQEDINNNKKQEERMLKQieNLQETETQLRNELEYVREELKQKRDEVKC 592
Cdd:pfam01576 287 RNKAEKQRRDLGEELEALKTELED-TLDTTAAQQELRSKREQEVTELKK--ALEEETRSHEAQLQEMRQKHTQALEELTE 363
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 593 KLDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLEL---ELESAKQKFGEITDTYQKEIE 669
Cdd:pfam01576 364 QLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQArlsESERQRAELAEKLSKLQSELE 443
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 670 dkkiSEENLLEEVEKakviadEAVKLQKEIDKRCQ--HKIAEMVALMEKHKHQYDKIIEERDSELGLYKSKEQEQSSLRA 747
Cdd:pfam01576 444 ----SVSSLLNEAEG------KNIKLSKDVSSLESqlQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKR 513
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 1034561377 748 SLEIELSNLKAELLSVKKQLEIE-------REEKEKLKREAKENTATLKEK 791
Cdd:pfam01576 514 NVERQLSTLQAQLSDMKKKLEEDagtlealEEGKKRLQRELEALTQQLEEK 564
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
289-625 |
1.22e-05 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 49.12 E-value: 1.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 289 LEESRDKVNQLEEKTKLQSENLKQSIEKQH-HLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLTEEKETQMEEsn 367
Cdd:pfam07888 46 LLQAQEAANRQREKEKERYKRDREQWERQRrELESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDALLAQ-- 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 368 kaRAAHSFVVTEFETTVCSLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVELEELKKVLGEKETLL 447
Cdd:pfam07888 124 --RAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQELRNSL 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 448 YENKQFEKIAEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTELENEKLKNTELTSHCNKLSLEN 527
Cdd:pfam07888 202 AQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEELRSLQERLNASERKVEGLGEELSSMAAQRDRTQAELHQARLQA 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 528 KELTQETSDMTLEL--------KNQQEDINNNKKQEERMLKQIENLQETETQL---RNELEYVREELKQKRDEVKCKLDK 596
Cdd:pfam07888 282 AQLTLQLADASLALregrarwaQERETLQQSAEADKDRIEKLSAELQRLEERLqeeRMEREKLEVELGREKDCNRVQLSE 361
|
330 340
....*....|....*....|....*....
gi 1034561377 597 SEENCNNLRKQVENKNKYIEELQQENKAL 625
Cdd:pfam07888 362 SRRELQELKASLRVAQKEKEQLQAEKQEL 390
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
386-780 |
1.25e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 49.35 E-value: 1.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 386 SLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTkltNNKEVELEELKKVLGEKETLL---------YENKQFEKI 456
Cdd:pfam15921 128 AMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDML---EDSNTQIEQLRKMMLSHEGVLqeirsilvdFEEASGKKI 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 457 AEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTELENEklknTELTshcnkLSLENKELTQETSD 536
Cdd:pfam15921 205 YEHDSMSTMHFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSESQNK----IELL-----LQQHQDRIEQLISE 275
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 537 MTLELKNQQEDINNNKKQEERMLKQIENLQEtetQLRNE-------LEYVREELKQKRDEVKCKLDKSEENCNNLRKQVE 609
Cdd:pfam15921 276 HEVEITGLTEKASSARSQANSIQSQLEIIQE---QARNQnsmymrqLSDLESTVSQLRSELREAKRMYEDKIEELEKQLV 352
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 610 NKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKFGEITDtyqkEIEDKKISEENLLEEVEKAKVIA 689
Cdd:pfam15921 353 LANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWD----RDTGNSITIDHLRRELDDRNMEV 428
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 690 DEAVKLQKEIDKRCQ-----------------HKIAEMVALMEKHKHQYDKIIEERDSELGLYKSKEQEQSSLRASLE-- 750
Cdd:pfam15921 429 QRLEALLKAMKSECQgqmerqmaaiqgkneslEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQek 508
|
410 420 430
....*....|....*....|....*....|...
gi 1034561377 751 ---IELSNlkAELLSVKKQLEIEREEKEKLKRE 780
Cdd:pfam15921 509 eraIEATN--AEITKLRSRVDLKLQELQHLKNE 539
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
226-760 |
1.62e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.78 E-value: 1.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 226 EELRVQAENSRLemhFKLKEDYEKIQHLEQEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKVNQLEEKTKL 305
Cdd:COG1196 279 LELELEEAQAEE---YELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEE 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 306 QSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLTEEKETQMEESNKARAAHSFVvtefettvc 385
Cdd:COG1196 356 AEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEEL--------- 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 386 sLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVELEELKKVLGEKETLLYENKQFEKIAEELKGTEQ 465
Cdd:COG1196 427 -EEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEG 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 466 ELIGLLQAREKEVHDLEIQLTA--ITTSEQYYSKEVKDLKTELENEKLKNTELTSHCNKLSLENKELTQEtsdmTLELKN 543
Cdd:COG1196 506 FLEGVKAALLLAGLRGLAGAVAvlIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRAT----FLPLDK 581
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 544 QQEDINNNKKQEERMLKQIENLQETETQLRNELEYVREELKQKRDEVkckldkseencnnlRKQVENKNKYIEELQQENK 623
Cdd:COG1196 582 IRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLV--------------AARLEAALRRAVTLAGRLR 647
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 624 ALKKKGTAESKQLNVYEIKVNKLELELESAKQKfgeitdtyQKEIEDKKISEENLLEEVEKAKVIADEAVKLQKEIDKRC 703
Cdd:COG1196 648 EVTLEGEGGSAGGSLTGGSRRELLAALLEAEAE--------LEELAERLAEEELELEEALLAEEEEERELAEAEEERLEE 719
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*..
gi 1034561377 704 QHKIAEMVALMEKHKHQYDKIIEERDSELGLYKSKEQEQSSLRASLEIELSNLKAEL 760
Cdd:COG1196 720 ELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREI 776
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
376-795 |
1.86e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.91 E-value: 1.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 376 VVTEFETTVCSLEELLRTE---QQRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVELEELKKVLGEKETLLYENKQ 452
Cdd:PRK03918 170 VIKEIKRRIERLEKFIKRTeniEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELES 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 453 FEKIAEELKGTEQELIGLLQAREKEVHDLEiqltaittseqyysKEVKDLKtELENEKLKNTELTSHCNKLSLENKELTQ 532
Cdd:PRK03918 250 LEGSKRKLEEKIRELEERIEELKKEIEELE--------------EKVKELK-ELKEKAEEYIKLSEFYEEYLDELREIEK 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 533 ETSDMTLELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELEYVREELKQKRDEVKCKLDKSEENCNNLRKqVENKN 612
Cdd:PRK03918 315 RLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEK-LEKEL 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 613 KYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKF----GEITDTYQKEI-----EDKKISEENLLEEVE 683
Cdd:PRK03918 394 EELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCpvcgRELTEEHRKELleeytAELKRIEKELKEIEE 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 684 KAKVIADEAVKLQKEIDKrcQHKIAEMVALMEKhkhqydkiIEERDSELGLYKSKEQEQSSLrasleiELSNLKAELLSV 763
Cdd:PRK03918 474 KERKLRKELRELEKVLKK--ESELIKLKELAEQ--------LKELEEKLKKYNLEELEKKAE------EYEKLKEKLIKL 537
|
410 420 430
....*....|....*....|....*....|..
gi 1034561377 764 KKQLEIEREEKEKLKREAKENTATLKEKKDKK 795
Cdd:PRK03918 538 KGEIKSLKKELEKLEELKKKLAELEKKLDELE 569
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
125-811 |
1.97e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 48.89 E-value: 1.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 125 AELRQKESKLQENRKIIEAQRKAIQE-LQFGNEKVSLKLEEGIQENKDLIKENNATRHLCNLLKETCARSAEKTKKYEYE 203
Cdd:TIGR00606 415 ADLQSKERLKQEQADEIRDEKKGLGRtIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNS 494
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 204 REETRQVYMDLNNNiEKMITAFEELRVQAENSRLEMHFKLKEDYEKIQHLEQEYKKEINDKEKQVSLLLIQITEKENKMK 283
Cdd:TIGR00606 495 LTETLKKEVKSLQN-EKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKK 573
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 284 DLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQR------SVSTQKALEEDLQIATKTICQLTE 357
Cdd:TIGR00606 574 QLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSyedklfDVCGSQDEESDLERLKEEIEKSSK 653
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 358 EK----------ETQMEESNKARAAHSFVVTEFETTVCSLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKLTN 427
Cdd:TIGR00606 654 QRamlagatavySQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAP 733
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 428 NKEVELEELKKVLGEketLLYENKQFEKIAEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQYYsKEVKDLKTELE 507
Cdd:TIGR00606 734 GRQSIIDLKEKEIPE---LRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQ-MELKDVERKIA 809
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 508 NEKLKnteltSHCNKLSLENKELTQETSDMTLELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELEYVREELKQKR 587
Cdd:TIGR00606 810 QQAAK-----LQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQ 884
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 588 --DEVKCKLDKSEENCNNLRKQVENKN----KYIEELQQENKALKKKGTAESK----QLNVYEIKVNKLELELESAKQKF 657
Cdd:TIGR00606 885 qfEEQLVELSTEVQSLIREIKDAKEQDspleTFLEKDQQEKEELISSKETSNKkaqdKVNDIKEKVKNIHGYMKDIENKI 964
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 658 GEITDTYQKEIEDKKISEENLLEEVEKAKVIADEAVKLQKEI--DKRCQHKIAEMVALMEKHKHQYDKIIEERDSELG-L 734
Cdd:TIGR00606 965 QDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDidTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKeM 1044
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1034561377 735 YKSKEQEQSSLRASLEIELSNLKAELLSVKKQLEIEREEKEKLKREAKENTATLKEKKDKKTQTFLLETPEIYWKLD 811
Cdd:TIGR00606 1045 GQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQFRDAEEKYREMMIVMRTTELVNKDLD 1121
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
566-794 |
2.21e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.84 E-value: 2.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 566 QETETQLRNELEYVREELKQKRDEvkckLDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNK 645
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKE----LAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 646 LELELESAKQKFGEITDTYQKeiedkkISEENLLEEVEKAKVIADEAVKLQ--KEIDKRCQHKIAEMVALMEKHKHQYDK 723
Cdd:COG4942 95 LRAELEAQKEELAELLRALYR------LGRQPPLALLLSPEDFLDAVRRLQylKYLAPARREQAEELRADLAELAALRAE 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1034561377 724 IIEERDSELGLYKSKEQEQSslrasleiELSNLKAELLSVKKQLEIEREEKEKLKREAKENTATLKEKKDK 794
Cdd:COG4942 169 LEAERAELEALLAELEEERA--------ALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
528-701 |
5.69e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 46.75 E-value: 5.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 528 KELTQETSDMTLELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELEYVREELKQKRDEVKCKLDKSEEN------- 600
Cdd:COG3883 26 SELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYRSggsvsyl 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 601 ---------------CNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKFGEITDTYQ 665
Cdd:COG3883 106 dvllgsesfsdfldrLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLA 185
|
170 180 190
....*....|....*....|....*....|....*.
gi 1034561377 666 kEIEDKKISEENLLEEVEKAKVIADEAVKLQKEIDK 701
Cdd:COG3883 186 -QLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAA 220
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
319-792 |
6.00e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 46.98 E-value: 6.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 319 HLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLtEEKETQMEESNKARAAHSFVVTEFETTVCSLEELlRTEQQRL 398
Cdd:PRK03918 173 EIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREI-NEISSELPELREELEKLEKEVKELEELKEEIEEL-EKELESL 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 399 EKNEDQLKILTMELQKKSSELEEMTKLTNNKEVELEELKKVLGEKETL--LYEN---------KQFEKIAEELKGTEQEL 467
Cdd:PRK03918 251 EGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLseFYEEyldelreieKRLSRLEEEINGIEERI 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 468 IGL------LQAREKEVHDLEIQLTAITTSEQYYsKEVKDLKTELENEKLKNTELTShcNKLSLENKELTQETSDMTLEL 541
Cdd:PRK03918 331 KELeekeerLEELKKKLKELEKRLEELEERHELY-EEAKAKKEELERLKKRLTGLTP--EKLEKELEELEKAKEEIEEEI 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 542 KNQQEDINNNKKQEERMLKQIENLQE------------TETQLRNELEYVREELKQKRDEVKcKLDKSEENCNNLRKQVE 609
Cdd:PRK03918 408 SKITARIGELKKEIKELKKAIEELKKakgkcpvcgrelTEEHRKELLEEYTAELKRIEKELK-EIEEKERKLRKELRELE 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 610 NKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKFGEIT---DTYQKEIEDKKISEENLLEEVEKAK 686
Cdd:PRK03918 487 KVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKgeiKSLKKELEKLEELKKKLAELEKKLD 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 687 VIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSElglykSKEQEQSSLRASLEIELSNLKAELLSVKKQ 766
Cdd:PRK03918 567 ELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAE-----KELEREEKELKKLEEELDKAFEELAETEKR 641
|
490 500
....*....|....*....|....*.
gi 1034561377 767 LEIEREEKEKLKREAKENTATLKEKK 792
Cdd:PRK03918 642 LEELRKELEELEKKYSEEEYEELREE 667
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
376-617 |
6.58e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 6.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 376 VVTEFETTVCSLEELLRTEQQrLEKNEDQLKILTmELQKKSSELEEMTKLTNNKEVELEELKKVLGEKETLLYENKQfEK 455
Cdd:COG4913 223 TFEAADALVEHFDDLERAHEA-LEDAREQIELLE-PIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAEL-EE 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 456 IAEELKGTEQElIGLLQAREKEVHDLEIQLTAittseQYYS---KEVKDLKTELENeklknteLTSHCNKLSLENKELTQ 532
Cdd:COG4913 300 LRAELARLEAE-LERLEARLDALREELDELEA-----QIRGnggDRLEQLEREIER-------LERELEERERRRARLEA 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 533 ETSDMTLELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELEYVREELKQKRDEVKCKLDKSEENCNNLRKQVENKN 612
Cdd:COG4913 367 LLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALR 446
|
....*
gi 1034561377 613 KYIEE 617
Cdd:COG4913 447 DALAE 451
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
635-797 |
1.04e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.59 E-value: 1.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 635 QLNVYEIKVNKLELELESAKQKfgeiTDTYQKEIEDKKISEENLLEEVEKAKviaDEAVKLQKEIDKRcQHKIAEMVALM 714
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAE----LDALQAELEELNEEYNELQAELEALQ---AEIDKLQAEIAEA-EAEIEERREEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 715 EKH-KHQY----------------------------DKIIEERDSELGLYKSKEQEQSSLRASLEI---ELSNLKAELLS 762
Cdd:COG3883 89 GERaRALYrsggsvsyldvllgsesfsdfldrlsalSKIADADADLLEELKADKAELEAKKAELEAklaELEALKAELEA 168
|
170 180 190
....*....|....*....|....*....|....*
gi 1034561377 763 VKKQLEIEREEKEKLKREAKENTATLKEKKDKKTQ 797
Cdd:COG3883 169 AKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEA 203
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
250-683 |
1.19e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.91 E-value: 1.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 250 IQHLEQEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKVNQLEEKTKlQSENLKQSIEKQHHLTKELEDIKv 329
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEE-ELEELEAELEELREELEKLEKLL- 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 330 SLQRSVSTQKALEEDLQIatktICQLTEEKETQMEESNKARAAHSFVVTEFETTVCSLEELLRteqQRLEKNEDQLKILT 409
Cdd:COG4717 126 QLLPLYQELEALEAELAE----LPERLEELEERLEELRELEEELEELEAELAELQEELEELLE---QLSLATEEELQDLA 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 410 MELQKKSSELEEMTKLTNNKEVELEELKKVLGEKETLLYENKQFEKIAEELKGTEQE-LIGLLQAREKEVHDLEIQLTAI 488
Cdd:COG4717 199 EELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAaALLALLGLGGSLLSLILTIAGV 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 489 TT---------------SEQYYSKEVKDLKTELENEKLKNTELTSHCNKLSLENKELTQETSDMTLELKNQQEDINNNKK 553
Cdd:COG4717 279 LFlvlgllallflllarEKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEE 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 554 QEERMlkQIENLQETETQLRNELE-------YVREELKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQENKALK 626
Cdd:COG4717 359 LEEEL--QLEELEQEIAALLAEAGvedeeelRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEE 436
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 1034561377 627 KKgtaesKQLNVYEIKVNKLELELESAKQKFGEITDtyQKEIEDKKISEENLLEEVE 683
Cdd:COG4717 437 LE-----EELEELEEELEELREELAELEAELEQLEE--DGELAELLQELEELKAELR 486
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
289-510 |
1.82e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 1.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 289 LEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLTEEKETQMEESNK 368
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 369 ARAAHSFVVTEFETT--VCSLEELLRTEQ-QRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVELEELKKvlgEKET 445
Cdd:COG4942 102 QKEELAELLRALYRLgrQPPLALLLSPEDfLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERA---ELEA 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034561377 446 LLYENKQFEKIAEELKGTEQELIGLLQAREKEvhdLEIQLTAITTSEQYYSKEVKDLKTELENEK 510
Cdd:COG4942 179 LLAELEEERAALEALKAERQKLLARLEKELAE---LAAELAELQQEAEELEALIARLEAEAAAAA 240
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
407-790 |
1.82e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.53 E-value: 1.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 407 ILTMELQKKSSELEemTKLTNNKEVELEELKKVLGEKETLLYENKQFEKIAEELKGTEQELIGLLQAREK---EVHDLEI 483
Cdd:COG4717 46 MLLERLEKEADELF--KPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEElreELEKLEK 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 484 QLTAITTSEQYYS--KEVKDLKTELENEKLKNTELTSHCNKLSLENKELTQETSDMTLELKNQQEDinnNKKQEERMLKQ 561
Cdd:COG4717 124 LLQLLPLYQELEAleAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLA---TEEELQDLAEE 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 562 IENLQETETQLRNELEYVREELKQKRDEVKcKLDKSEENCNNLRKQVENKNKYI----------EELQQENKALKKKGTA 631
Cdd:COG4717 201 LEELQQRLAELEEELEEAQEELEELEEELE-QLENELEAAALEERLKEARLLLLiaaallallgLGGSLLSLILTIAGVL 279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 632 ----------------ESKQLNVYEIKVNKLELELESAKQKFGEITDTYQKEIEDKKISEENLLEEVEKAKVIADEAVKL 695
Cdd:COG4717 280 flvlgllallflllarEKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEEL 359
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 696 QKEIDKRCQHKiaEMVALMEKHKHQYDKIIEERDSELGLYKSKEQEQSSLRASLE------------IELSNLKAELLSV 763
Cdd:COG4717 360 EEELQLEELEQ--EIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEellgeleelleaLDEEELEEELEEL 437
|
410 420
....*....|....*....|....*..
gi 1034561377 764 KKQLEIEREEKEKLKREAKENTATLKE 790
Cdd:COG4717 438 EEELEELEEELEELREELAELEAELEQ 464
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
526-813 |
1.90e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 45.35 E-value: 1.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 526 ENKELTQETSDMTLELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELEYVREELKQKRDEVKCKLDKSEENCNNLR 605
Cdd:pfam02463 174 ALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEI 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 606 KQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKFGEITDTYQKEIEDKKISEENLLEEVEKA 685
Cdd:pfam02463 254 ESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKE 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 686 KVIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQydkiiEERDSELGLYKSKEQEQSSLRASlEIELSNLKAELLSVKK 765
Cdd:pfam02463 334 KEEIEELEKELKELEIKREAEEEEEEELEKLQEKL-----EQLEEELLAKKKLESERLSSAAK-LKEEELELKSEEEKEA 407
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 1034561377 766 QLEIEREEKEKLKREAKENTATLKEKKDKKTQTFLLETPEIYWKLDSK 813
Cdd:pfam02463 408 QLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEK 455
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
243-826 |
2.28e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 45.28 E-value: 2.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 243 LKEDYEKIQHLEQEYKKEINDKEKQVSLLLIQITEKE----NKMKDLTFLLEESRDKVNQLEEKTKLQSEnlkqsiekqh 318
Cdd:PRK01156 188 LEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSieynNAMDDYNNLKSALNELSSLEDMKNRYESE---------- 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 319 hltkeledikvslqrsvstQKALEEDLQIATKTICQLTEEKETQME-ESNKARAAHSFVVTEFE--TTVCSLEELLRTEQ 395
Cdd:PRK01156 258 -------------------IKTAESDLSMELEKNNYYKELEERHMKiINDPVYKNRNYINDYFKykNDIENKKQILSNID 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 396 QRLEKNEDQLKILTmELQKKSSELEEMTKLTNNKEVELEELKKVLGEKETLLYE----NKQFEKIAEELKGTEQELIGLL 471
Cdd:PRK01156 319 AEINKYHAIIKKLS-VLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSieslKKKIEEYSKNIERMSAFISEIL 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 472 QAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTELENEKLKNTELTSHCNKLSLENK------ELTQETSDMTL------ 539
Cdd:PRK01156 398 KIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVcpvcgtTLGEEKSNHIInhynek 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 540 ---------ELKNQQEDINNNKKQEERMLKQIE----NLQETETQLRNELEYVREELKQKRDEVKCKLDKSEENCNnlrk 606
Cdd:PRK01156 478 ksrleekirEIEIEVKDIDEKIVDLKKRKEYLEseeiNKSINEYNKIESARADLEDIKIKINELKDKHDKYEEIKN---- 553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 607 qvENKNKYIEELQQEN---------------KALKKKGTAESKQLNVYEIKVNKLELELESAKQkfgeITDTYQKEIEDK 671
Cdd:PRK01156 554 --RYKSLKLEDLDSKRtswlnalavislidiETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKS----YIDKSIREIENE 627
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 672 KISEENLLEEVEKAKVIADeavKLQKEIDKrCQHKIAEMvalmekhkhqydKIIEERDSELglyKSKEQEQSSLRASLEI 751
Cdd:PRK01156 628 ANNLNNKYNEIQENKILIE---KLRGKIDN-YKKQIAEI------------DSIIPDLKEI---TSRINDIEDNLKKSRK 688
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1034561377 752 ELSNLKAELLSVKKQLEIEREEKEKLKREAKENTATL-KEKKDKKTQTFLLETPEIYWKLDSKAVPSQTVSRNFTS 826
Cdd:PRK01156 689 ALDDAKANRARLESTIEILRTRINELSDRINDINETLeSMKKIKKAIGDLKRLREAFDKSGVPAMIRKSASQAMTS 764
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
121-340 |
2.36e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 2.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 121 VSTEAELRQKESKLQENRKIIEAQRKAIQELQFGNEKVSLKLEEGIQENKDLIKENNATRHLCNLLKETCARSAEKTKKY 200
Cdd:COG4942 16 AAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 201 EYEREETRQVYMDLNNNIEKM-ITAFEELRVQAENS----RLEMHFK-----LKEDYEKIQHLEQEYKKEINDKEKQVSL 270
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLgRQPPLALLLSPEDFldavRRLQYLKylapaRREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 271 LLIQITEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKA 340
Cdd:COG4942 176 LEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
387-803 |
2.70e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.05 E-value: 2.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 387 LEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKLTNnkevELEELKKVLGEKETLLYENKQFEKIAEELKGTEQE 466
Cdd:PRK03918 191 IEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVK----ELEELKEEIEELEKELESLEGSKRKLEEKIRELEE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 467 LIGLLQAREKEVHDLEIQLTAITTSEQYYSK------EVKDLKTELENEKLKNTELTSHCNKLSLENKELTQETSDMTLE 540
Cdd:PRK03918 267 RIEELKKEIEELEEKVKELKELKEKAEEYIKlsefyeEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKK 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 541 LKNQQEDINNNKKQEE------RMLKQIENLQETETQLRNE-LEYVREELKQKRDEVKCKLDKSEENCNNLRKQVENKNK 613
Cdd:PRK03918 347 LKELEKRLEELEERHElyeeakAKKEELERLKKRLTGLTPEkLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKK 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 614 YIEELqqenKALKKKGTAESKQLNVYEIK--VNKLELELESAKQKFGEITDTYQKEIEDKKISEENLLEEVE--KAKVIA 689
Cdd:PRK03918 427 AIEEL----KKAKGKCPVCGRELTEEHRKelLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESEliKLKELA 502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 690 DEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKI------IEERDSELGLYKSKEQEQSSLRASLEIELSNLKAELL-- 761
Cdd:PRK03918 503 EQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLkgeiksLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEel 582
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 1034561377 762 --SVKKQLEIEREEKEKLKREAKENTATLKEKKDKKTQTFLLET 803
Cdd:PRK03918 583 gfESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEE 626
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
495-698 |
2.81e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 45.07 E-value: 2.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 495 YSKEVKDLKTELENEKLKNTELtshcNKLSLENKELTQETSDMTlelKNQQED-INNNKKQEERMLKQIENLQETETQLR 573
Cdd:COG5022 873 SAQRVELAERQLQELKIDVKSI----SSLKLVNLELESEIIELK---KSLSSDlIENLEFKTELIARLKKLLNNIDLEEG 945
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 574 NELEYVREELKQKRDEVKCKLDKSEENCNNLRKQ----VENKNKYIEELQQENKAL------KKKGTAESKQLNVYEIKV 643
Cdd:COG5022 946 PSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKstilVREGNKANSELKNFKKELaelskqYGALQESTKQLKELPVEV 1025
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1034561377 644 nkleLELESAKQKFGEITDTYQKEIEDKKISEENLLEEVEKAKviADEAVKLQKE 698
Cdd:COG5022 1026 ----AELQSASKIISSESTELSILKPLQKLKGLLLLENNQLQA--RYKALKLRRE 1074
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
450-757 |
2.84e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 44.51 E-value: 2.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 450 NKQFEKIAEELKGTEQELIGL---LQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTELENEKLKNTELTSHCNKLSLE 526
Cdd:COG4372 44 QEELEQLREELEQAREELEQLeeeLEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKE 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 527 NKELTQETSDMTLELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELEY-----VREELKQKRDEVKCKLDKSEENC 601
Cdd:COG4372 124 RQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQAlseaeAEQALDELLKEANRNAEKEEELA 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 602 NNLRKQV-ENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKFGEITDTYQKEIEDKKISEENLLE 680
Cdd:COG4372 204 EAEKLIEsLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAAL 283
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1034561377 681 EVEKAKVIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKSKEQEQSSLRASLEIELSNLK 757
Cdd:COG4372 284 ELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQLLLVGLLDNDVLELLS 360
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
242-478 |
2.88e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 2.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 242 KLKEDYEKIQHLEQEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLT 321
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 322 KELEDIKVSLQRSvSTQKALE--------EDLQIATKTICQLTEEKETQMEESNKARAAhsfvvtefettvcsleelLRT 393
Cdd:COG4942 104 EELAELLRALYRL-GRQPPLAlllspedfLDAVRRLQYLKYLAPARREQAEELRADLAE------------------LAA 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 394 EQQRLEKNEDQLKILTMELQKKSSELEemtKLTNNKEVELEELKKVLGEKETllyENKQFEKIAEELKGTEQELIGLLQA 473
Cdd:COG4942 165 LRAELEAERAELEALLAELEEERAALE---ALKAERQKLLARLEKELAELAA---ELAELQQEAEELEALIARLEAEAAA 238
|
....*
gi 1034561377 474 REKEV 478
Cdd:COG4942 239 AAERT 243
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
558-802 |
3.33e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 44.53 E-value: 3.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 558 MLKQIENLQETETQLRNELEYVR-EELKQKrdevkckldkSEENCNNLRKQVENKNKYIEELQQENKALKKkgtaESKQL 636
Cdd:PRK05771 61 KLRSYLPKLNPLREEKKKVSVKSlEELIKD----------VEEELEKIEKEIKELEEEISELENEIKELEQ----EIERL 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 637 NVYE-IKVN-KLELELESAKQKFGEItdtyqkeiedKKISEENLLEEVEKAKVIADEAVKlqkeidkrcqhkiAEMVALM 714
Cdd:PRK05771 127 EPWGnFDLDlSLLLGFKYVSVFVGTV----------PEDKLEELKLESDVENVEYISTDK-------------GYVYVVV 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 715 EKHKHQYDKIIEE-RDSELGLYKSKEQEQSS-LRASLEIELSNLKAELLSVKKQLEIEREEKEKLKREAKENTATLKEK- 791
Cdd:PRK05771 184 VVLKELSDEVEEElKKLGFERLELEEEGTPSeLIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERa 263
|
250
....*....|....*.
gi 1034561377 792 ----KDKKT-QTFLLE 802
Cdd:PRK05771 264 ealsKFLKTdKTFAIE 279
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
559-729 |
3.81e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.99 E-value: 3.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 559 LKQIENLQETETQLRnELEYVREELKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNv 638
Cdd:COG1579 6 LRALLDLQELDSELD-RLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLG- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 639 yEIKVNK----LELELESAKqkfgeitdtyqKEIEDKKISEENLLEEVEKAKVIADEAVKLQKEIDKRCQHKIAEMVALM 714
Cdd:COG1579 84 -NVRNNKeyeaLQKEIESLK-----------RRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEEL 151
|
170
....*....|....*
gi 1034561377 715 EKHKHQYDKIIEERD 729
Cdd:COG1579 152 AELEAELEELEAERE 166
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
577-790 |
5.00e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.85 E-value: 5.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 577 EYVREELKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQENK--ALKKKGTAESKQLNVYEIKVNKLELELESAK 654
Cdd:COG3206 160 AYLEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGlvDLSEEAKLLLQQLSELESQLAEARAELAEAE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 655 QKFgeitDTYQKEIEDKKISEENLLEEVEKAKVIADEAvKLQKEIDKrcqhkiaemvaLMEKHKHQYDKIIEERDSELGL 734
Cdd:COG3206 240 ARL----AALRAQLGSGPDALPELLQSPVIQQLRAQLA-ELEAELAE-----------LSARYTPNHPDVIALRAQIAAL 303
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1034561377 735 YKSKEQEQSSLRASLEIELSNLKAELLSVKKQLEIEREEKEK----------LKREAKENTATLKE 790
Cdd:COG3206 304 RAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAElpeleaelrrLEREVEVARELYES 369
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
259-477 |
6.03e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 6.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 259 KEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQsiekqhhLTKELEDIKVSLQRSVSTQ 338
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRA-------LEQELAALEAELAELEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 339 KALEEDLQIATKTICQLTEEKETQMEESNKARAAHSFVVTEFETTVCSLEELLRTEQQRLEKNEDQLKILTMELQKKSSE 418
Cdd:COG4942 93 AELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAE 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1034561377 419 LEEMTKLTNNKEVELEELKKVLGEKETLLY----ENKQFEKIAEELKGTEQELIGLLQAREKE 477
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLArlekELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
667-783 |
9.71e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 42.92 E-value: 9.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 667 EIEDKKISEENLLEEVEKAKVIADEAVKLQKEiDKRCQhKIAEMVALMEKHKHQYDKIIEERDSELG-----LYKSKEQE 741
Cdd:COG2433 380 EALEELIEKELPEEEPEAEREKEHEERELTEE-EEEIR-RLEEQVERLEAEVEELEAELEEKDERIErlereLSEARSEE 457
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1034561377 742 QSSLRAslEIELSNLKAELLSVKKQLEIEREEKEKLKREAKE 783
Cdd:COG2433 458 RREIRK--DREISRLDREIERLERELEEERERIEELKRKLER 497
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
525-627 |
9.79e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 42.92 E-value: 9.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 525 LENKELTQETSDMTLELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELE-------YVREELKQKRDEVKCKLDKS 597
Cdd:COG2433 385 LIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEekderieRLERELSEARSEERREIRKD 464
|
90 100 110
....*....|....*....|....*....|....*.
gi 1034561377 598 EE------NCNNLRKQVENKNKYIEELQQENKALKK 627
Cdd:COG2433 465 REisrldrEIERLERELEEERERIEELKRKLERLKE 500
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
392-742 |
9.90e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.19 E-value: 9.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 392 RTEQQRLEKNEDQLkiLTMELQKKSSELEEMTKLTNN---KEVELEELKKVLGEKETLLYE-NKQFEKIAEELKGTEQEl 467
Cdd:pfam17380 287 RQQQEKFEKMEQER--LRQEKEEKAREVERRRKLEEAekaRQAEMDRQAAIYAEQERMAMErERELERIRQEERKRELE- 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 468 igllQAREKEVhdleiqltaitTSEQYYSKEVKDLKTELENEKLKNTELTSHCNKLSLENKELTQETSDMTLELKNQQed 547
Cdd:pfam17380 364 ----RIRQEEI-----------AMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIR-- 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 548 innnKKQEERMLKQIENLQETETQlrnELEYVREELKQKRDEVKckldkseencnNLRKQVENKNKYIEELQQEnkalkk 627
Cdd:pfam17380 427 ----AEQEEARQREVRRLEEERAR---EMERVRLEEQERQQQVE-----------RLRQQEEERKRKKLELEKE------ 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 628 kgtaESKQLNVYEIKVNKLELELESAKQKFgeITDTYQKEIEDKKISEENLLEEVEKAKVIADEAVKLQKEIDKRcqHKI 707
Cdd:pfam17380 483 ----KRDRKRAEEQRRKILEKELEERKQAM--IEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEER--RRI 554
|
330 340 350
....*....|....*....|....*....|....*
gi 1034561377 708 AEMVALMEKHKHQYDKIIEERDSELGLYKSKEQEQ 742
Cdd:pfam17380 555 QEQMRKATEERSRLEAMEREREMMRQIVESEKARA 589
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
613-787 |
1.07e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.84 E-value: 1.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 613 KYIEELQQENKALKKKGTAESKQlnvyEIKVNKLELELESaKQKFGEITDTyQKEIEDKKISEENLLEEVEKAKviaDEA 692
Cdd:PRK12704 42 RILEEAKKEAEAIKKEALLEAKE----EIHKLRNEFEKEL-RERRNELQKL-EKRLLQKEENLDRKLELLEKRE---EEL 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 693 VKLQKEIDKRCQHkiaemvalMEKHKHQYDKIIEERDSEL----GLykSKEQEQSSLRASLEIELSNLKAELLSvkkqlE 768
Cdd:PRK12704 113 EKKEKELEQKQQE--------LEKKEEELEELIEEQLQELerisGL--TAEEAKEILLEKVEEEARHEAAVLIK-----E 177
|
170
....*....|....*....
gi 1034561377 769 IEREEKEKLKREAKENTAT 787
Cdd:PRK12704 178 IEEEAKEEADKKAKEILAQ 196
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
609-798 |
1.09e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 42.89 E-value: 1.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 609 ENKNKYIEELQQENKALKKKgtaeSKQLNVYEIKVNKLELELESAKQKFgeitdtyqKEIEDKKISEenLLEEVEKAKVI 688
Cdd:PRK00409 516 EKLNELIASLEELERELEQK----AEEAEALLKEAEKLKEELEEKKEKL--------QEEEDKLLEE--AEKEAQQAIKE 581
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 689 A-DEAVKLQKEIDKRCQHKIAEMVA--LMEKHKHqYDKIIEERDSELglyKSKEQEQSSLRASLEIELSNL--KAELLSV 763
Cdd:PRK00409 582 AkKEADEIIKELRQLQKGGYASVKAheLIEARKR-LNKANEKKEKKK---KKQKEKQEELKVGDEVKYLSLgqKGEVLSI 657
|
170 180 190
....*....|....*....|....*....|....*...
gi 1034561377 764 KKQLEIEREE---KEKLKREAKENTATLKEKKDKKTQT 798
Cdd:PRK00409 658 PDDKEAIVQAgimKMKVPLSDLEKIQKPKKKKKKKPKT 695
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
226-613 |
1.49e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.64 E-value: 1.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 226 EELRVQAEnSRLEMHFKLKEDYEKIQHLEQEYKKEINdkekqVSLLLIQITEKENKMKDLTFLLEESRDKVNQLEEKTKL 305
Cdd:PRK04863 789 EQLRAERE-ELAERYATLSFDVQKLQRLHQAFSRFIG-----SHLAVAFEADPEAELRQLNRRRVELERALADHESQEQQ 862
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 306 QSENLKQSIEKQHHLTKELEDIKVslqrsvstqkaLEEDlqiatkTICQLTEEKETQMEESNKARAahsfVVTEFETTVC 385
Cdd:PRK04863 863 QRSQLEQAKEGLSALNRLLPRLNL-----------LADE------TLADRVEEIREQLDEAEEAKR----FVQQHGNALA 921
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 386 SLEELLRTEQQRLEKNEdqlkiltmELQKKSSELEEMTKLTNNKEVELEELKKVlgeKETLLYENkqfekiAEELKGTEQ 465
Cdd:PRK04863 922 QLEPIVSVLQSDPEQFE--------QLKQDYQQAQQTQRDAKQQAFALTEVVQR---RAHFSYED------AAEMLAKNS 984
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 466 ELIGLLQAREKEV-HDLEIQLTAITTSEQYYSKEVKDLkteleneklknTELTSHCNKLSLENKELTQETSDMTLelknq 544
Cdd:PRK04863 985 DLNEKLRQRLEQAeQERTRAREQLRQAQAQLAQYNQVL-----------ASLKSSYDAKRQMLQELKQELQDLGV----- 1048
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1034561377 545 QEDINNNKKQEERMLKQIENLQETETQlRNELEYVREELKQKRDEVKCKLDKSEENCNNLRKQVENKNK 613
Cdd:PRK04863 1049 PADSGAEERARARRDELHARLSANRSR-RNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKA 1116
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
560-701 |
1.60e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.59 E-value: 1.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 560 KQIENLQETETQLRNELEyvreELKQKRDEVKCKLDKSEENCNNLRKQV-ENKNKYIEELQQENKALKKKGTAESKQLNV 638
Cdd:COG4913 288 RRLELLEAELEELRAELA----RLEAELERLEARLDALREELDELEAQIrGNGGDRLEQLEREIERLERELEERERRRAR 363
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1034561377 639 YEIKVNKLELELESAKQKFGEItdtyQKEIEDKKISEENLLEEVEKAKV-IADEAVKLQKEIDK 701
Cdd:COG4913 364 LEALLAALGLPLPASAEEFAAL----RAEAAALLEALEEELEALEEALAeAEAALRDLRRELRE 423
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
125-777 |
2.12e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 41.99 E-value: 2.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 125 AELRQKESKLQENRKIIEAQRKA----IQELQFGNEKVSLKLEEGIQENKDLIKENNATRHLCNLLKETCARsaEKTKKY 200
Cdd:COG5022 810 KEYRSYLACIIKLQKTIKREKKLreteEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRVELAE--RQLQEL 887
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 201 EYEREETRQVYmDLNNNIEKMITafeELRVQAENS-RLEMHFKLKEDYEKIQHLEQEYKKEINDKEKQVSLLLIQITEKE 279
Cdd:COG5022 888 KIDVKSISSLK-LVNLELESEII---ELKKSLSSDlIENLEFKTELIARLKKLLNNIDLEEGPSIEYVKLPELNKLHEVE 963
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 280 NKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEEdLQIATKTICQLTEEK 359
Cdd:COG5022 964 SKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQLKELPVEVAE-LQSASKIISSESTEL 1042
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 360 ETQMEESNkaraahsfvvtefettvcsLEELLRTEQQRLEKNEDQLKiLTMELQKKSSELEEMTKLTNNKEVELEELKKV 439
Cdd:COG5022 1043 SILKPLQK-------------------LKGLLLLENNQLQARYKALK-LRRENSLLDDKQLYQLESTENLLKTINVKDLE 1102
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 440 LGEKETLLYENKQFEKIAEELK-GTEQELIGLLqarEKEVHDLEI--QLTAITTSEQYYSKEVKDLKTELENEKLKNT-- 514
Cdd:COG5022 1103 VTNRNLVKPANVLQFIVAQMIKlNLLQEISKFL---SQLVNTLEPvfQKLSVLQLELDGLFWEANLEALPSPPPFAALse 1179
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 515 ELTSHCNKLSLENKELTQETSDMTLELKNQQEDINNN---KKQEERMLKQIENLQETETQLrNELEYVREELKQKRDEVK 591
Cdd:COG5022 1180 KRLYQSALYDEKSKLSSSEVNDLKNELIALFSKIFSGwprGDKLKKLISEGWVPTEYSTSL-KGFNNLNKKFDTPASMSN 1258
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 592 CKL-DKSEENCNNLRKQVENKNKYIEELQQENKALKkkgtaeSKQLNVYEIKVNKLELELESAKQKFGEITDTY--QKEI 668
Cdd:COG5022 1259 EKLlSLLNSIDNLLSSYKLEEEVLPATINSLLQYIN------VGLFNALRTKASSLRWKSATEVNYNSEELDDWcrEFEI 1332
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 669 EDKKISEENLLEEVEKAKVIADEAVKLQKEIDKRCQHKIAEMVALMEKHK-----HQYDKIIEERDSELGLyKSKEQEQS 743
Cdd:COG5022 1333 SDVDEELEELIQAVKVLQLLKDDLNKLDELLDACYSLNPAEIQNLKSRYDpadkeNNLPKEILKKIEALLI-KQELQLSL 1411
|
650 660 670
....*....|....*....|....*....|....*..
gi 1034561377 744 SLRASLE---IELSNLKAELLSVKKQLEIEREEKEKL 777
Cdd:COG5022 1412 EGKDETEvhlSEIFSEEKSLISLDRNSIYKEEVLSSL 1448
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
205-329 |
2.28e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 41.74 E-value: 2.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 205 EETRQVYMDLNNNIEKMITAFEELRVQAENSRLEMHF------KLKEDYEK------------IQHLEQEYKKEINDKEK 266
Cdd:PRK00409 505 EEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEAllkeaeKLKEELEEkkeklqeeedklLEEAEKEAQQAIKEAKK 584
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1034561377 267 QVSLLLIQITEKEnKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLtKELEDIKV 329
Cdd:PRK00409 585 EADEIIKELRQLQ-KGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEEL-KVGDEVKY 645
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
392-767 |
3.79e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.19 E-value: 3.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 392 RTEQQRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVELEELKKVLGEKETLLYE---------------------N 450
Cdd:TIGR00606 206 QMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKimkldneikalksrkkqmekdN 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 451 KQFEKIAEE-LKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQYYSKEVKDL---KTELENE----KLKNTELTSHCNK 522
Cdd:TIGR00606 286 SELELKMEKvFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLnqeKTELLVEqgrlQLQADRHQEHIRA 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 523 LSLENKEL-------------------------------------TQETSDMTLELKNQQEDINNNKKQEERMLKQIENL 565
Cdd:TIGR00606 366 RDSLIQSLatrleldgfergpfserqiknfhtlvierqedeaktaAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELK 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 566 QETETQLRNELEYVREELKQKRDEVKCKLDKSEENCNNLRK-QVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVN 644
Cdd:TIGR00606 446 KEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERElSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEME 525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 645 KLELELESAKQKFGEITDTYQKEIEDKKISEENLLEEVEKA------KVIADEAVKLQKEIDKRCQH--KIAEMVALMEK 716
Cdd:TIGR00606 526 QLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLgyfpnkKQLEDWLHSKSKEINQTRDRlaKLNKELASLEQ 605
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|.
gi 1034561377 717 HKHQYDKIIEERDSELGLYKSKEQEQSSLRAsLEIELSNLKAELLSVKKQL 767
Cdd:TIGR00606 606 NKNHINNELESKEEQLSSYEDKLFDVCGSQD-EESDLERLKEEIEKSSKQR 655
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
671-791 |
4.38e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.92 E-value: 4.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 671 KKISEENLLEEVEKAKVIADEAvklQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELG-LYKSKEQEQSSLRASL 749
Cdd:PRK12704 26 KKIAEAKIKEAEEEAKRILEEA---KKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQkLEKRLLQKEENLDRKL 102
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1034561377 750 EiELSNLKAELLSVKKQLEIEREEKEKLKREAKENTATLKEK 791
Cdd:PRK12704 103 E-LLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQE 143
|
|
| PRK00106 |
PRK00106 |
ribonuclease Y; |
522-708 |
4.89e-03 |
|
ribonuclease Y;
Pssm-ID: 178867 [Multi-domain] Cd Length: 535 Bit Score: 40.62 E-value: 4.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 522 KLSLENKELT-----QETSDMTLELKNQQEDINNNKKQEERMLKQiENLQETETQLRNELEYVREELKQKRDEVKCKLDK 596
Cdd:PRK00106 27 KSAKEAAELTllnaeQEAVNLRGKAERDAEHIKKTAKRESKALKK-ELLLEAKEEARKYREEIEQEFKSERQELKQIESR 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 597 SEENCNNLRKQVENKNKYIEELQQENKALKKKgtaeSKQLNVYEIKVNKLELELESAKQKFGEITDTYQKEIEDKKiSEE 676
Cdd:PRK00106 106 LTERATSLDRKDENLSSKEKTLESKEQSLTDK----SKHIDEREEQVEKLEEQKKAELERVAALSQAEAREIILAE-TEN 180
|
170 180 190
....*....|....*....|....*....|....*..
gi 1034561377 677 NLLEEV-----EKAKVIADEAVKLQKEIDKRCQHKIA 708
Cdd:PRK00106 181 KLTHEIatrirEAEREVKDRSDKMAKDLLAQAMQRLA 217
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
213-477 |
6.30e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.67 E-value: 6.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 213 DLNNNIEKMITAFEELRvqaensrlEMHFKLKEDYEKIQHLE------QEYKKEINDKEKQVSLLLI--------QITEK 278
Cdd:COG4913 222 DTFEAADALVEHFDDLE--------RAHEALEDAREQIELLEpirelaERYAAARERLAELEYLRAAlrlwfaqrRLELL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 279 ENKMKDLTFLLEESRDKVNQLEEKTKLQSENLkQSIEKQH--HLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLT 356
Cdd:COG4913 294 EAELEELRAELARLEAELERLEARLDALREEL-DELEAQIrgNGGDRLEQLEREIERLERELEERERRRARLEALLAALG 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 357 EEKETQMEESNKARAahsfvvtEFETTVCSLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVELEEL 436
Cdd:COG4913 373 LPLPASAEEFAALRA-------EAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLAL 445
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 1034561377 437 KKVlgeketllyenkqfekIAEELKGTEQEL--IG-LLQAREKE 477
Cdd:COG4913 446 RDA----------------LAEALGLDEAELpfVGeLIEVRPEE 473
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
289-477 |
6.86e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 39.81 E-value: 6.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 289 LEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLTEEKETQMEESNK 368
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 369 ARAAHSFV--------VTEFETTVCSLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVELEELKKVL 440
Cdd:COG3883 98 SGGSVSYLdvllgsesFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQ 177
|
170 180 190
....*....|....*....|....*....|....*..
gi 1034561377 441 GEKETLLYENKQFEKIAEELKGTEQELIGLLQAREKE 477
Cdd:COG3883 178 AEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAA 214
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
274-493 |
7.61e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 39.81 E-value: 7.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 274 QITEKENKMKDLTFLLEESRDKVNQLEEKtklqsenlkqsIEKqhhLTKELEDIKVSLQRSVSTQKALEEDLQIATKTIC 353
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAE-----------LEE---LNEEYNELQAELEALQAEIDKLQAEIAEAEAEIE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 354 QLTEEKETQMEESNKARAAHSFVVTEFETTvcSLEELLrteqqrlekneDQLKILTMELQKKSSELEEMTKLTNNKEVEL 433
Cdd:COG3883 83 ERREELGERARALYRSGGSVSYLDVLLGSE--SFSDFL-----------DRLSALSKIADADADLLEELKADKAELEAKK 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 434 EELKKVLGEKETLLYENKQFEKIAEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQ 493
Cdd:COG3883 150 AELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAE 209
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
558-823 |
7.99e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 40.34 E-value: 7.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 558 MLKQIENLQETETQLRNELEYVREELKQKRDEVKCKLDKSEENCN---NLRKQVENKNKYIEELQQENKALKKKGTAESK 634
Cdd:pfam02463 140 QGGKIEIIAMMKPERRLEIEEEAAGSRLKRKKKEALKKLIEETENlaeLIIDLEELKLQELKLKEQAKKALEYYQLKEKL 219
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 635 QLNVYEIKVNKLELELESAKQKFGEITDTYQKEIEDKK---ISEENLLEEVEKAKVIADEAVKLQKEIDKRCQHKIAEMV 711
Cdd:pfam02463 220 ELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKqeiEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELK 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 712 ALMEKHKHQYdKIIEERDSELGLYKSKEQEQSSLRASLEIELSNLKAELLSVKKQLEIEREEKEKLKREAKENTATLKEK 791
Cdd:pfam02463 300 SELLKLERRK-VDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAK 378
|
250 260 270
....*....|....*....|....*....|..
gi 1034561377 792 KDKKTQTFLLETPEIYWKLDSKAVPSQTVSRN 823
Cdd:pfam02463 379 KKLESERLSSAAKLKEEELELKSEEEKEAQLL 410
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
410-762 |
9.59e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 39.89 E-value: 9.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 410 MELQKKSSELEE------MTKLTNNKEVELEELKKVlGEKETLLyeNKQFEKIAEELKGTEQELIGLLQAREKEVHDLEi 483
Cdd:PLN02939 84 MELPQKSTSSDDdhnrasMQRDEAIAAIDNEQQTNS-KDGEQLS--DFQLEDLVGMIQNAEKNILLLNQARLQALEDLE- 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 484 qltAITTSEQYYSKEVKDLKTELENeklkntelTSHCNKLSLENKELTQETSDMTLELKNQ-QEDINNNKKQEERMLKQI 562
Cdd:PLN02939 160 ---KILTEKEALQGKINILEMRLSE--------TDARIKLAAQEKIHVEILEEQLEKLRNElLIRGATEGLCVHSLSKEL 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 563 ENLQETETQLRNELEYVREELkqkrDEVKckldKSEENCNNLRKQVENKNKYIEELQQENKALKKK-GTAESKQLNVYEI 641
Cdd:PLN02939 229 DVLKEENMLLKDDIQFLKAEL----IEVA----ETEERVFKLEKERSLLDASLRELESKFIVAQEDvSKLSPLQYDCWWE 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034561377 642 KVNKLELELESAKQKFGEITDTYQK--EIEDKKISEENLLEEVEKAKV------IADEAVKLQKEIDKRCQHKIAEMVAL 713
Cdd:PLN02939 301 KVENLQDLLDRATNQVEKAALVLDQnqDLRDKVDKLEASLKEANVSKFssykveLLQQKLKLLEERLQASDHEIHSYIQL 380
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 1034561377 714 mekhkhqYDKIIEERDSELGlyKSKEQeqsSLRASLEIELSNLKAELLS 762
Cdd:PLN02939 381 -------YQESIKEFQDTLS--KLKEE---SKKRSLEHPADDMPSEFWS 417
|
|
| |
