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Conserved domains on  [gi|1034613594|ref|XP_016859460|]
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CRACD-like protein isoform X3 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DUF4592 pfam15262
Domain of unknown function (DUF4592); This protein family is a domain of unknown function, ...
159-254 1.09e-23

Domain of unknown function (DUF4592); This protein family is a domain of unknown function, which lies to the N-terminus of the protein. This domain family is found in eukaryotes, and is typically between 114 and 130 amino acids in length. There are two completely conserved residues (L and A) that may be functionally important. In humans, the gene that encodes this protein lies in the position, chromosome 2 open reading frame 55.


:

Pssm-ID: 464602 [Multi-domain]  Cd Length: 127  Bit Score: 97.10  E-value: 1.09e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594 159 AKRGEDAGMSSEDDGLPRSPPEMSLLHDVGPGTTIKVSVVSPDHVSDSTVSAR------------------ISDNSLAPV 220
Cdd:pfam15262  14 TKRADDAGASSEDDGLPRSPPEISLLHEILLSTESKSSDPPQHLSSLSLAGTGseeeeqstpvkssrpkspFSPSGTIEP 93
                          90       100       110
                  ....*....|....*....|....*....|....
gi 1034613594 221 ADFSYPAESSSCLDNSAAKHKLQVKPRNQRSSKM 254
Cdd:pfam15262  94 INFDAPPQALACLDNSAAKHKLSVKPKNQRASRK 127
PRK07003 super family cl35530
DNA polymerase III subunit gamma/tau;
538-840 3.82e-06

DNA polymerase III subunit gamma/tau;


The actual alignment was detected with superfamily member PRK07003:

Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 51.00  E-value: 3.82e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594 538 EPGPGSLDAEAAAperpkaerAEAPPAGAERAAPERKAERGGAELRGAKKFSVSSCRARPRPGVSRPLERASGRLPLARS 617
Cdd:PRK07003  359 EPAVTGGGAPGGG--------VPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAP 430
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594 618 GPVWRSEAAlDDLQGLPEPQHAKPGPRKLAERGPQDSGDRAASPAGPRKSPQEAAAAPGTREPCPAAQEPAPSEdRNPFP 697
Cdd:PRK07003  431 APPATADRG-DDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAAT-PAAVP 508
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594 698 VKLRSTSLSLKYRDGAsqevkgvkrysAEVRLERSLTVLPKEEKCPL---GTAPAL-----RGTRAPSDQGKGKARPPEP 769
Cdd:PRK07003  509 DARAPAAASREDAPAA-----------AAPPAPEARPPTPAAAAPAAragGAAAALdvlrnAGMRVSSDRGARAAAAAKP 577
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1034613594 770 lsskpplprkpllqsftlphqPAPPDAGPGEREPRKEPRTAEKRPLRRGAEKSLPPAATGPGA--DGQPAPPW 840
Cdd:PRK07003  578 ---------------------AAAPAAAPKPAAPRVAVQVPTPRARAATGDAPPNGAARAEQAaeSRGAPPPW 629
PRK07003 super family cl35530
DNA polymerase III subunit gamma/tau;
319-634 5.39e-05

DNA polymerase III subunit gamma/tau;


The actual alignment was detected with superfamily member PRK07003:

Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 47.15  E-value: 5.39e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594 319 ARARRARLQHSSALTASVEEGGVPGEDPSSRPATPELAEPESAPTLRVEPPSPPEGPPNPGPDGGKQDGEAPPAGPCAPA 398
Cdd:PRK07003  383 PGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSR 462
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594 399 TDKAeevvcAPEDVASPFPTAIPEGDTTPPetdpAATSEAPSARDGPERSVPKEAEPTPPVLPDEEKGPPGPAPEPEREA 478
Cdd:PRK07003  463 CDER-----DAQPPADSGSASAPASDAPPD----AAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEAR 533
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594 479 ETEPerGAGTEPERIGTepstapapsppapksclkhrpAAASegpaaspplaaaesppvepgpgsLDAEAAAPERPKAER 558
Cdd:PRK07003  534 PPTP--AAAAPAARAGG---------------------AAAA-----------------------LDVLRNAGMRVSSDR 567
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1034613594 559 AEAPPAGAERAAPERKAERggaelrgakkfsvsscRARPRPGVSRPLERASGRLPLARSGPVWRSEAALDDLQGLP 634
Cdd:PRK07003  568 GARAAAAAKPAAAPAAAPK----------------PAAPRVAVQVPTPRARAATGDAPPNGAARAEQAAESRGAPP 627
 
Name Accession Description Interval E-value
DUF4592 pfam15262
Domain of unknown function (DUF4592); This protein family is a domain of unknown function, ...
159-254 1.09e-23

Domain of unknown function (DUF4592); This protein family is a domain of unknown function, which lies to the N-terminus of the protein. This domain family is found in eukaryotes, and is typically between 114 and 130 amino acids in length. There are two completely conserved residues (L and A) that may be functionally important. In humans, the gene that encodes this protein lies in the position, chromosome 2 open reading frame 55.


Pssm-ID: 464602 [Multi-domain]  Cd Length: 127  Bit Score: 97.10  E-value: 1.09e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594 159 AKRGEDAGMSSEDDGLPRSPPEMSLLHDVGPGTTIKVSVVSPDHVSDSTVSAR------------------ISDNSLAPV 220
Cdd:pfam15262  14 TKRADDAGASSEDDGLPRSPPEISLLHEILLSTESKSSDPPQHLSSLSLAGTGseeeeqstpvkssrpkspFSPSGTIEP 93
                          90       100       110
                  ....*....|....*....|....*....|....
gi 1034613594 221 ADFSYPAESSSCLDNSAAKHKLQVKPRNQRSSKM 254
Cdd:pfam15262  94 INFDAPPQALACLDNSAAKHKLSVKPKNQRASRK 127
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
538-840 3.82e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 51.00  E-value: 3.82e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594 538 EPGPGSLDAEAAAperpkaerAEAPPAGAERAAPERKAERGGAELRGAKKFSVSSCRARPRPGVSRPLERASGRLPLARS 617
Cdd:PRK07003  359 EPAVTGGGAPGGG--------VPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAP 430
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594 618 GPVWRSEAAlDDLQGLPEPQHAKPGPRKLAERGPQDSGDRAASPAGPRKSPQEAAAAPGTREPCPAAQEPAPSEdRNPFP 697
Cdd:PRK07003  431 APPATADRG-DDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAAT-PAAVP 508
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594 698 VKLRSTSLSLKYRDGAsqevkgvkrysAEVRLERSLTVLPKEEKCPL---GTAPAL-----RGTRAPSDQGKGKARPPEP 769
Cdd:PRK07003  509 DARAPAAASREDAPAA-----------AAPPAPEARPPTPAAAAPAAragGAAAALdvlrnAGMRVSSDRGARAAAAAKP 577
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1034613594 770 lsskpplprkpllqsftlphqPAPPDAGPGEREPRKEPRTAEKRPLRRGAEKSLPPAATGPGA--DGQPAPPW 840
Cdd:PRK07003  578 ---------------------AAAPAAAPKPAAPRVAVQVPTPRARAATGDAPPNGAARAEQAaeSRGAPPPW 629
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
319-634 5.39e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 47.15  E-value: 5.39e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594 319 ARARRARLQHSSALTASVEEGGVPGEDPSSRPATPELAEPESAPTLRVEPPSPPEGPPNPGPDGGKQDGEAPPAGPCAPA 398
Cdd:PRK07003  383 PGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSR 462
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594 399 TDKAeevvcAPEDVASPFPTAIPEGDTTPPetdpAATSEAPSARDGPERSVPKEAEPTPPVLPDEEKGPPGPAPEPEREA 478
Cdd:PRK07003  463 CDER-----DAQPPADSGSASAPASDAPPD----AAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEAR 533
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594 479 ETEPerGAGTEPERIGTepstapapsppapksclkhrpAAASegpaaspplaaaesppvepgpgsLDAEAAAPERPKAER 558
Cdd:PRK07003  534 PPTP--AAAAPAARAGG---------------------AAAA-----------------------LDVLRNAGMRVSSDR 567
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1034613594 559 AEAPPAGAERAAPERKAERggaelrgakkfsvsscRARPRPGVSRPLERASGRLPLARSGPVWRSEAALDDLQGLP 634
Cdd:PRK07003  568 GARAAAAAKPAAAPAAAPK----------------PAAPRVAVQVPTPRARAATGDAPPNGAARAEQAAESRGAPP 627
 
Name Accession Description Interval E-value
DUF4592 pfam15262
Domain of unknown function (DUF4592); This protein family is a domain of unknown function, ...
159-254 1.09e-23

Domain of unknown function (DUF4592); This protein family is a domain of unknown function, which lies to the N-terminus of the protein. This domain family is found in eukaryotes, and is typically between 114 and 130 amino acids in length. There are two completely conserved residues (L and A) that may be functionally important. In humans, the gene that encodes this protein lies in the position, chromosome 2 open reading frame 55.


Pssm-ID: 464602 [Multi-domain]  Cd Length: 127  Bit Score: 97.10  E-value: 1.09e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594 159 AKRGEDAGMSSEDDGLPRSPPEMSLLHDVGPGTTIKVSVVSPDHVSDSTVSAR------------------ISDNSLAPV 220
Cdd:pfam15262  14 TKRADDAGASSEDDGLPRSPPEISLLHEILLSTESKSSDPPQHLSSLSLAGTGseeeeqstpvkssrpkspFSPSGTIEP 93
                          90       100       110
                  ....*....|....*....|....*....|....
gi 1034613594 221 ADFSYPAESSSCLDNSAAKHKLQVKPRNQRSSKM 254
Cdd:pfam15262  94 INFDAPPQALACLDNSAAKHKLSVKPKNQRASRK 127
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
538-840 3.82e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 51.00  E-value: 3.82e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594 538 EPGPGSLDAEAAAperpkaerAEAPPAGAERAAPERKAERGGAELRGAKKFSVSSCRARPRPGVSRPLERASGRLPLARS 617
Cdd:PRK07003  359 EPAVTGGGAPGGG--------VPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAP 430
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594 618 GPVWRSEAAlDDLQGLPEPQHAKPGPRKLAERGPQDSGDRAASPAGPRKSPQEAAAAPGTREPCPAAQEPAPSEdRNPFP 697
Cdd:PRK07003  431 APPATADRG-DDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAAT-PAAVP 508
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594 698 VKLRSTSLSLKYRDGAsqevkgvkrysAEVRLERSLTVLPKEEKCPL---GTAPAL-----RGTRAPSDQGKGKARPPEP 769
Cdd:PRK07003  509 DARAPAAASREDAPAA-----------AAPPAPEARPPTPAAAAPAAragGAAAALdvlrnAGMRVSSDRGARAAAAAKP 577
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1034613594 770 lsskpplprkpllqsftlphqPAPPDAGPGEREPRKEPRTAEKRPLRRGAEKSLPPAATGPGA--DGQPAPPW 840
Cdd:PRK07003  578 ---------------------AAAPAAAPKPAAPRVAVQVPTPRARAATGDAPPNGAARAEQAaeSRGAPPPW 629
PHA03247 PHA03247
large tegument protein UL36; Provisional
409-872 5.03e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 50.71  E-value: 5.03e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594  409 PEDVASPFPTAIPEGDTTPPETDPAATSEAPSARDGPErsvpkeAEPTPPVLPDEEKGPPGPAPEPEREAETEPERGAGT 488
Cdd:PHA03247  2605 RGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHP------PPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASS 2678
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594  489 EPERigtepstapapsppapkscLKHRPAAASEGPAASPPLAAAESPPVEPGPGSLDAEAAAPERPKAERAEAPPAGAER 568
Cdd:PHA03247  2679 PPQR-------------------PRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAP 2739
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594  569 AAPERKAerggaelrgAKKFSVSSCRARPRPGVSRPLERASGRLPLARSGPVwrseaalddlqgLPEPQHAKPGPRKLAE 648
Cdd:PHA03247  2740 APPAVPA---------GPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRR------------LTRPAVASLSESRESL 2798
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594  649 RGPQDSGDRAASPAGPRKSPQEAAAAPGTREPCPAAQEPAPSEDRNPFPvklrsTSLSLkyrdGASQEVKGVKRYSAEVR 728
Cdd:PHA03247  2799 PSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPP-----PSLPL----GGSVAPGGDVRRRPPSR 2869
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594  729 LERSLTVLPKEEKCPLGTAPAlrgtraPSDQGKGKARPPEPlsskPPLPRKPLLQSFTLPHQPAPPDAGPGEREPRKEPR 808
Cdd:PHA03247  2870 SPAAKPAAPARPPVRRLARPA------VSRSTESFALPPDQ----PERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRP 2939
                          410       420       430       440       450       460
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1034613594  809 TAEKRPLRRGAEKSLPPAATGPGADGQPAPPWITVTRQKRRGTLDQPPNQEDKPGARTLKSEPG 872
Cdd:PHA03247  2940 QPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSR 3003
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
409-776 1.83e-05

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 49.01  E-value: 1.83e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594  409 PEDVASPFPTAIPEGDTTPPETDPAATSEAPSARDGPERSVPKeAEPTPPVLPDEEKGPPGPAPEPEREAETEPERGAGT 488
Cdd:PHA03307    81 ANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPP-ASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASP 159
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594  489 EPERIGTEPSTAPAPSPPAPKSCLKHRPAAASEGPAASPPLAAAESPPVEPGPGSLDAEAAAPERPKAERAEAPPAGAER 568
Cdd:PHA03307   160 AAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDS 239
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594  569 AAPERKAERGGAELRGAKKFSVSSCRARPRPGVSRPLERASGRLPLARSGPvwRSEAALDDLQGLPEPQHAKPGPRKLAE 648
Cdd:PHA03307   240 SSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSS--PRERSPSPSPSSPGSGPAPSSPRASSS 317
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594  649 RGPQDSGDRAASpaGPRKSPQEAAAAPGTREPCPAaqePAPSEDRNPFPVKLRSTSLSLKYRDGASQEVKGvkrySAEVR 728
Cdd:PHA03307   318 SSSSRESSSSST--SSSSESSRGAAVSPGPSPSRS---PSPSRPPPPADPSSPRKRPRPSRAPSSPAASAG----RPTRR 388
                          330       340       350       360
                   ....*....|....*....|....*....|....*....|....*...
gi 1034613594  729 LERSltvLPKEEKCPLGTAPALRGTRAPSDQGKGKARPPEPLSSKPPL 776
Cdd:PHA03307   389 RARA---AVAGRARRRDATGRFPAGRPRPSPLDAGAASGAFYARYPLL 433
PHA03247 PHA03247
large tegument protein UL36; Provisional
361-878 3.33e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.01  E-value: 3.33e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594  361 APTLRVEPPSPPEGPPNPGPDGGKQDGEAPPagpcapatdkaeevvcAPEDVASPFPTAIPE---GDTTPPETDPAATSE 437
Cdd:PHA03247  2477 APVYRRPAEARFPFAAGAAPDPGGGGPPDPD----------------APPAPSRLAPAILPDepvGEPVHPRMLTWIRGL 2540
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594  438 APSARDGPERSVPKEAEPTPPVLPDEEKGPPGPAPEPEREAETEPERGAGTEPERI-----GTEPSTAPAPSPPAPKSCL 512
Cdd:PHA03247  2541 EELASDDAGDPPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSArprapVDDRGDPRGPAPPSPLPPD 2620
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594  513 KHRPAAASEGPAASPPLAAAESPPVEPGPGSLDAEAAAPERPKAERAEAPPAGAERAAPERKAERGGAELRGAKKFSVSS 592
Cdd:PHA03247  2621 THAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLAD 2700
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594  593 CRARPRPGVSRPLERASGrLPLARSGPVWRSEAALDDLQGLPEPQHAKP----GPRKLAERGPQDSGDRAASPAGPRKSP 668
Cdd:PHA03247  2701 PPPPPPTPEPAPHALVSA-TPLPPGPAAARQASPALPAAPAPPAVPAGPatpgGPARPARPPTTAGPPAPAPPAAPAAGP 2779
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594  669 QEAAAAPGTREPCPAAQEPAPSEDRNPFPVKLRSTSLSLkyrDGASQEVKGVKRYSAEVRLERSLTVLPKEEKCPLGTAP 748
Cdd:PHA03247  2780 PRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAAL---PPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSV 2856
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594  749 ALRG-------TRAPSDQGKGKARPPEPLSSKPPLPRKPllQSFTLPHQPAPPDAGPGEREPRKEPRTAEKRPLRRGAEK 821
Cdd:PHA03247  2857 APGGdvrrrppSRSPAAKPAAPARPPVRRLARPAVSRST--ESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPP 2934
                          490       500       510       520       530
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1034613594  822 S--LPPAATGPGADGQPAPPWITVTRQKRRGTLdqPPNQEDKPGARTLKSEPGKQAKVP 878
Cdd:PHA03247  2935 PppRPQPPLAPTTDPAGAGEPSGAVPQPWLGAL--VPGRVAVPRFRVPQPAPSREAPAS 2991
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
319-634 5.39e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 47.15  E-value: 5.39e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594 319 ARARRARLQHSSALTASVEEGGVPGEDPSSRPATPELAEPESAPTLRVEPPSPPEGPPNPGPDGGKQDGEAPPAGPCAPA 398
Cdd:PRK07003  383 PGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSR 462
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594 399 TDKAeevvcAPEDVASPFPTAIPEGDTTPPetdpAATSEAPSARDGPERSVPKEAEPTPPVLPDEEKGPPGPAPEPEREA 478
Cdd:PRK07003  463 CDER-----DAQPPADSGSASAPASDAPPD----AAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEAR 533
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594 479 ETEPerGAGTEPERIGTepstapapsppapksclkhrpAAASegpaaspplaaaesppvepgpgsLDAEAAAPERPKAER 558
Cdd:PRK07003  534 PPTP--AAAAPAARAGG---------------------AAAA-----------------------LDVLRNAGMRVSSDR 567
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1034613594 559 AEAPPAGAERAAPERKAERggaelrgakkfsvsscRARPRPGVSRPLERASGRLPLARSGPVWRSEAALDDLQGLP 634
Cdd:PRK07003  568 GARAAAAAKPAAAPAAAPK----------------PAAPRVAVQVPTPRARAATGDAPPNGAARAEQAAESRGAPP 627
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
485-695 1.09e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 46.02  E-value: 1.09e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594 485 GAGTEPERIGTEPSTAPAPSPPAPKSCLKHRPAAASEGPAASPPLAAAESPPVEPGPGS--LDAEAAAPERPKAERAEAP 562
Cdd:PRK12323  369 GGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSpaPEALAAARQASARGPGGAP 448
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594 563 -PAGAERAAPERKAERGGAELRGakkfsvsscRARPRPGVSRPLERASGRLPLARSGPVWrsEAALDDLqGLPEPQHAKP 641
Cdd:PRK12323  449 aPAPAPAAAPAAAARPAAAGPRP---------VAAAAAAAPARAAPAAAPAPADDDPPPW--EELPPEF-ASPAPAQPDA 516
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1034613594 642 GPRKLAERGPQDSGDRAASPAGPRKSPQEAAA----APGTREPCPAAQEPAPSEDRNP 695
Cdd:PRK12323  517 APAGWVAESIPDPATADPDDAFETLAPAPAAApaprAAAATEPVVAPRPPRASASGLP 574
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
541-888 2.95e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 44.98  E-value: 2.95e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594 541 PGSLDAEAAAperpkAERAEAPPAGAERAAPERKAERGGAELRGAKKFSVSScRARPRPGVSRPLERASGRLPLARSGPV 620
Cdd:PRK07764  365 PSASDDERGL-----LARLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPA-PAAAAPAAAAAPAPAAAPQPAPAPAPA 438
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594 621 WRSEAALDDLQGLPEPQHAkPGPRKLAERGPQDSGDRAASPAGPRKSPQEAAAAPGTREPCPAAQEPAPSEDR------- 693
Cdd:PRK07764  439 PAPPSPAGNAPAGGAPSPP-PAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAAtlrerwp 517
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594 694 -------------------NPFPVKLRSTSLSLKYRDGASQEVKGVKRYSAEVRlerslTVLPKEekcpLGTAPALRGTR 754
Cdd:PRK07764  518 eilaavpkrsrktwaillpEATVLGVRGDTLVLGFSTGGLARRFASPGNAEVLV-----TALAEE----LGGDWQVEAVV 588
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594 755 APSDQGKGKARPPEPLSSKPPlPRKPLLQSFTLPHQPAPPDAGPGEREPRKEPRTAEKRPLRRGAEKSlPPAATGPGADG 834
Cdd:PRK07764  589 GPAPGAAGGEGPPAPASSGPP-EEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPK-HVAVPDASDGG 666
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1034613594 835 QPAPPWITVTRQKRRGTLDQPPNQEDKPGARTLKSEPGK-QAKVPERGQEPVKQA 888
Cdd:PRK07764  667 DGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPaATPPAGQADDPAAQP 721
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
427-839 4.41e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 44.39  E-value: 4.41e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594  427 PPETDPAATSEAPSARDGPERSVPKEAEPTPPVL--PDEEKGPPGPAPEPEREAETEPERGAGTEPERiGTEPSTAPAPS 504
Cdd:PHA03307    44 VSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTeaPANESRSTPTWSLSTLAPASPAREGSPTPPGP-SSPDPPPPTPP 122
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594  505 PPAPKSclKHRPAAASEGPAASPPLAAAESPPVEPGPGSLDAEAAAPERPKAERAEAPPAGAERAAPERKAERGGAELRG 584
Cdd:PHA03307   123 PASPPP--SPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPA 200
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594  585 AKKfsvSSCRARPRPGVSRPLERASGRLPLARSGPVWRSEAALDDLQGLPEPQHAKPGPRKLAERGPQDSGDRAASPAGP 664
Cdd:PHA03307   201 AAS---PRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNG 277
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594  665 RKS-PQEAAAAPGTREPCPAAQEPAPSEDRNPfpvklrSTSLSLKYRDGasqevkgvkrySAEVRLERSLTVLPKEEKCP 743
Cdd:PHA03307   278 PSSrPGPASSSSSPRERSPSPSPSSPGSGPAP------SSPRASSSSSS-----------SRESSSSSTSSSSESSRGAA 340
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594  744 LGTAPALrgtrapsdqgkgkARPPEPLSSKPPLPRKPLLQSFTLPHQPAPPDAGPGEREPRKEPRTAEKRPLRRGAEKSL 823
Cdd:PHA03307   341 VSPGPSP-------------SRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRF 407
                          410
                   ....*....|....*....
gi 1034613594  824 P---PAATGPGADGQPAPP 839
Cdd:PHA03307   408 PagrPRPSPLDAGAASGAF 426
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
412-695 5.64e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 44.07  E-value: 5.64e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594 412 VASPFPTAIPEGDTTPPETDPAATSEAPSARDGPERSVPKEAEPTPPVLPDEEKGPPGPAPEPEREAETEPERGAGTEPE 491
Cdd:PRK07003  372 VPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPA 451
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594 492 RIGTEPSTAPAPSPPAPKSCLKHRPAAASEGPAASPPLAAAESPPVEPGPGSLDAEAAAPERPKAERAEAPPAGAERAAP 571
Cdd:PRK07003  452 KANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPE 531
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594 572 ERKAErggaelrgakkfsvsscrarprPGVSRPLERASGrlplarsgpvwrSEAALDDLQglpepqhaKPGPRKLAERGp 651
Cdd:PRK07003  532 ARPPT----------------------PAAAAPAARAGG------------AAAALDVLR--------NAGMRVSSDRG- 568
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 1034613594 652 QDSGDRAASPAGPRKSPQEAAAAPGTREPCPAAQEPAPSEDRNP 695
Cdd:PRK07003  569 ARAAAAAKPAAAPAAAPKPAAPRVAVQVPTPRARAATGDAPPNG 612
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
514-695 1.04e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 43.05  E-value: 1.04e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594 514 HRPAAASEGPAASPPLAAAESPPVEPGPGSLDAEAAAPERPKAERAEAPPAGAERAAPERKAERggaelrgakkfsvssc 593
Cdd:PRK07764  636 PAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPA---------------- 699
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594 594 RARPRPGVSRPLERASGRLPLARSGPV--WRSEAALDDLQGLPEPQHAKPGPRKLAERGPQDSGDRAASPAGPRKSPQEA 671
Cdd:PRK07764  700 QPAPAPAATPPAGQADDPAAQPPQAAQgaSAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPP 779
                         170       180
                  ....*....|....*....|....
gi 1034613594 672 AAAPGTREpcPAAQEPAPSEDRNP 695
Cdd:PRK07764  780 SEEEEMAE--DDAPSMDDEDRRDA 801
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
546-883 1.11e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 43.24  E-value: 1.11e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594  546 AEAAAPERPKAERAEAPPAGAERAAPERKAERGGAELRGAKKFSVSSCRARPRPGVSRPLERASGRLPLA-RSGPVWRSE 624
Cdd:PHA03307    56 VAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASpPPSPAPDLS 135
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594  625 AALDDLQGLPEPQHAKPGPRKLAERGPQDSGDRAASPAGPRKSPQEAAAAPGTREPC--PAAQEPAPSEDRNPFPVKLRS 702
Cdd:PHA03307   136 EMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEppPSTPPAAASPRPPRRSSPISA 215
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594  703 TSLSLKYRDGASQEVKGVKRYSAEVRLERSLTVLPKEEKCPLGTAPALRGTRAPSDQGKGKARPPEPLSSKP------PL 776
Cdd:PHA03307   216 SASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSssspreRS 295
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594  777 PRKPLLQSFTLPHQPAPPDAGPGEREPRKEPRTAEKRPLRRGAEKSLPPAATGPGADGQPAPPWITVTRQKRRGTLDQPP 856
Cdd:PHA03307   296 PSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAP 375
                          330       340
                   ....*....|....*....|....*..
gi 1034613594  857 NQEDKPGARTLKSEPGKQAKVPERGQE 883
Cdd:PHA03307   376 SSPAASAGRPTRRRARAAVAGRARRRD 402
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
421-834 1.56e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 42.28  E-value: 1.56e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594 421 PEGDTTPPETDPAATSEAPSARDGPERSVPKEAEPTPPVLPdeekgppgpapEPEREAETEPERGAGTEPERIGTEPSTA 500
Cdd:PRK07764  381 LERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAA-----------APAPAAAPQPAPAPAPAPAPPSPAGNAP 449
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594 501 PAPSPPAPKSCLKHRPAAASEGPAASPPLAAAESPPVEPGPgslDAEAAAPERPKAERAEAPPAGAER-------AAPER 573
Cdd:PRK07764  450 AGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAP---AAAPAAPAAPAAPAGADDAATLRErwpeilaAVPKR 526
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594 574 KAERGGAELRGAK-----------KFSVSSCRAR-PRPGVSRPLERASgrlpLARSGPVWRSEAALD-DLQGLPEPQHAK 640
Cdd:PRK07764  527 SRKTWAILLPEATvlgvrgdtlvlGFSTGGLARRfASPGNAEVLVTAL----AEELGGDWQVEAVVGpAPGAAGGEGPPA 602
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594 641 PGPRKLAERGPQ-DSGDRAASPAGPRKSPQEAAAAPGTREPCPAAQEPAPSEDRNPFPVKLRSTSLSlKYRDGASQEVKG 719
Cdd:PRK07764  603 PASSGPPEEAARpAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGW-PAKAGGAAPAAP 681
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594 720 VKRYSAEVRLERSLTVLPKEEKCPLGTAPALRGTR---APSDQGKGKARPPEPLSSKPPLPRKPLLQSFTLPHQPAPPDA 796
Cdd:PRK07764  682 PPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDpaaQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPP 761
                         410       420       430
                  ....*....|....*....|....*....|....*...
gi 1034613594 797 GPGEREPrkePRTAEKRPLRRGAEKSLPPAATGPGADG 834
Cdd:PRK07764  762 PAPAPAA---APAAAPPPSPPSEEEEMAEDDAPSMDDE 796
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
411-635 3.16e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 41.40  E-value: 3.16e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594 411 DVASPFPTAIPEGDTTPPETDPAATSEAPSARDGPERSVPKEAEPTPPVLPDEEKGPPGPAPEPEREAETEPERGAGTEP 490
Cdd:PRK12323  371 GAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAP 450
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594 491 ER--IGTEPSTAPAPSPPAPKSCLKHRPAAASEGPAASPPLAAAESPPVEPGPGSLDAEAAAPERPKAERAEAPPAGAER 568
Cdd:PRK12323  451 APapAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPA 530
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1034613594 569 AAPERKAERGGAELRGAKKFSVSSCRARPRPGVSRPLERASGRLPLARSGpvWRSEAALDDLQGLPE 635
Cdd:PRK12323  531 TADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGD--WPALAARLPVRGLAQ 595
PRK12678 PRK12678
transcription termination factor Rho; Provisional
484-694 5.35e-03

transcription termination factor Rho; Provisional


Pssm-ID: 237171 [Multi-domain]  Cd Length: 672  Bit Score: 40.66  E-value: 5.35e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594 484 RGAGTEPERIGTEPSTAPAPSPPAPKSCLKHRPAAASEGPAASPPLAAAESPPVEPGPGSLDAEAAAPERPKAERAEAPP 563
Cdd:PRK12678   59 RGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAAR 138
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594 564 AGAERAAPERKAERGGAELRGAKKFSVSSCRARPRPGVSRPLERASGRLPLARSgpvwRSEAALDDLQGLPEPQHAKPGP 643
Cdd:PRK12678  139 RGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGR----REERGRDGDDRDRRDRREQGDR 214
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1034613594 644 RKlaERGPQDSGDRAASPAGPRKSPQEAAAAPGTREPCPAAQEPAPSEDRN 694
Cdd:PRK12678  215 RE--ERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRG 263
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
513-621 5.98e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 40.47  E-value: 5.98e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594 513 KHRPAAASEGPAASPPLAAAESPPVEPgpgsldaEAAAPERPKAERAEAPPAGAERAAPERKAERGGAELRGAKKFSVSS 592
Cdd:PRK14951  391 AAPVAQAAAAPAPAAAPAAAASAPAAP-------PAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIP 463
                          90       100       110
                  ....*....|....*....|....*....|....
gi 1034613594 593 CRARPRPGVSRPLERASG-----RLPLARSGPVW 621
Cdd:PRK14951  464 VRVAPEPAVASAAPAPAAapaaaRLTPTEEGDVW 497
PHA03247 PHA03247
large tegument protein UL36; Provisional
313-779 9.17e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 40.31  E-value: 9.17e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594  313 LPPPGGARARRArlqhssaltasveeGGVPGEDPSSRPATPELAEPESAPTLRVEPPSPPEGPPNPGPDGGKQDGEAPPA 392
Cdd:PHA03247  2624 PDPPPPSPSPAA--------------NEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAAR 2689
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594  393 GPCAPATDKAEEVvcAPEDVASPFPTAIPEGDTTPPETDPAATSEAPSardgPERSVPKeAEPTPPVLPDEEKGPPGPAP 472
Cdd:PHA03247  2690 PTVGSLTSLADPP--PPPPTPEPAPHALVSATPLPPGPAAARQASPAL----PAAPAPP-AVPAGPATPGGPARPARPPT 2762
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594  473 EPEREAETEPERGAGTEPERigTEPSTAPAPSPPAPKSCLKHRPAAASEGPAASPPLAAAESPPVEPGPGSLDAEAAAPE 552
Cdd:PHA03247  2763 TAGPPAPAPPAAPAAGPPRR--LTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPP 2840
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594  553 RPKAERAEAPPAGAERAAPERKAERGGAELRGAKKFSVSSCRAR--PRPGVSR--------PLERASGRLPLARSGPVWR 622
Cdd:PHA03247  2841 PPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRrlARPAVSRstesfalpPDQPERPPQPQAPPPPQPQ 2920
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594  623 SEAALDDLQGLPEPQHAKPGPRKLAERGPQDSGDraasPAGPRKSPQEAAAAPG--------TREPCPAAQEPAPS---- 690
Cdd:PHA03247  2921 PQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGE----PSGAVPQPWLGALVPGrvavprfrVPQPAPSREAPASStppl 2996
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034613594  691 ------------------EDRNPFPVKLRSTSLSLKYRDGASQEvkGVKRYSAEVRLERSLTVLPKEEKCPLGTAPALRG 752
Cdd:PHA03247  2997 tghslsrvsswasslalhEETDPPPVSLKQTLWPPDDTEDSDAD--SLFDSDSERSDLEALDPLPPEPHDPFAHEPDPAT 3074
                          490       500
                   ....*....|....*....|....*..
gi 1034613594  753 TRAPSDQGKGKARPPEPLSSKPPLPRK 779
Cdd:PHA03247  3075 PEAGARESPSSQFGPPPLSANAALSRR 3101
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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