![](files/infoQ.gif)
protocadherin-1 isoform X3 [Homo sapiens]
protocadherin( domain architecture ID 10182726)
protocadherin may have tightly regulated functions in the development, regionalization, and functional differentiation of the central nervous system
List of domain hits
![](files/help.png)
Name | Accession | Description | Interval | E-value | ||||
Protocadherin | pfam08374 | Protocadherin; The structure of protocadherins is similar to that of classic cadherins ... |
436-650 | 5.40e-86 | ||||
Protocadherin; The structure of protocadherins is similar to that of classic cadherins (pfam00028), but particularly on the cytoplasmic domains they also have some unique features. They are expressed in a variety of organizms and are found in high concentrations in the brain where they seem to be localized mainly at cell-cell contact sites. Their expression seems to be developmentally regulated. : Pssm-ID: 462451 Cd Length: 217 Bit Score: 273.15 E-value: 5.40e-86
|
||||||||
Cadherin_repeat | cd11304 | Cadherin tandem repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell ... |
133-229 | 8.14e-35 | ||||
Cadherin tandem repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. The cadherin repeat domains occur as tandem repeats in the extracellular regions, which are thought to mediate cell-cell contact when bound to calcium. They play numerous roles in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-, CNR-, proto-, and FAT-family cadherin, desmocollin, and desmoglein, a large variety of domain architectures with varying repeat copy numbers. Cadherin-repeat containing proteins exist as monomers, homodimers, or heterodimers. : Pssm-ID: 206637 [Multi-domain] Cd Length: 98 Bit Score: 127.81 E-value: 8.14e-35
|
||||||||
Cadherin_repeat | cd11304 | Cadherin tandem repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell ... |
238-332 | 1.17e-28 | ||||
Cadherin tandem repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. The cadherin repeat domains occur as tandem repeats in the extracellular regions, which are thought to mediate cell-cell contact when bound to calcium. They play numerous roles in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-, CNR-, proto-, and FAT-family cadherin, desmocollin, and desmoglein, a large variety of domain architectures with varying repeat copy numbers. Cadherin-repeat containing proteins exist as monomers, homodimers, or heterodimers. : Pssm-ID: 206637 [Multi-domain] Cd Length: 98 Bit Score: 110.10 E-value: 1.17e-28
|
||||||||
Cadherin_repeat | cd11304 | Cadherin tandem repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell ... |
23-123 | 4.82e-23 | ||||
Cadherin tandem repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. The cadherin repeat domains occur as tandem repeats in the extracellular regions, which are thought to mediate cell-cell contact when bound to calcium. They play numerous roles in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-, CNR-, proto-, and FAT-family cadherin, desmocollin, and desmoglein, a large variety of domain architectures with varying repeat copy numbers. Cadherin-repeat containing proteins exist as monomers, homodimers, or heterodimers. : Pssm-ID: 206637 [Multi-domain] Cd Length: 98 Bit Score: 94.30 E-value: 4.82e-23
|
||||||||
Cadherin_repeat | cd11304 | Cadherin tandem repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell ... |
351-433 | 4.10e-21 | ||||
Cadherin tandem repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. The cadherin repeat domains occur as tandem repeats in the extracellular regions, which are thought to mediate cell-cell contact when bound to calcium. They play numerous roles in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-, CNR-, proto-, and FAT-family cadherin, desmocollin, and desmoglein, a large variety of domain architectures with varying repeat copy numbers. Cadherin-repeat containing proteins exist as monomers, homodimers, or heterodimers. : Pssm-ID: 206637 [Multi-domain] Cd Length: 98 Bit Score: 88.52 E-value: 4.10e-21
|
||||||||
Name | Accession | Description | Interval | E-value | ||||
Protocadherin | pfam08374 | Protocadherin; The structure of protocadherins is similar to that of classic cadherins ... |
436-650 | 5.40e-86 | ||||
Protocadherin; The structure of protocadherins is similar to that of classic cadherins (pfam00028), but particularly on the cytoplasmic domains they also have some unique features. They are expressed in a variety of organizms and are found in high concentrations in the brain where they seem to be localized mainly at cell-cell contact sites. Their expression seems to be developmentally regulated. Pssm-ID: 462451 Cd Length: 217 Bit Score: 273.15 E-value: 5.40e-86
|
||||||||
Cadherin_repeat | cd11304 | Cadherin tandem repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell ... |
133-229 | 8.14e-35 | ||||
Cadherin tandem repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. The cadherin repeat domains occur as tandem repeats in the extracellular regions, which are thought to mediate cell-cell contact when bound to calcium. They play numerous roles in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-, CNR-, proto-, and FAT-family cadherin, desmocollin, and desmoglein, a large variety of domain architectures with varying repeat copy numbers. Cadherin-repeat containing proteins exist as monomers, homodimers, or heterodimers. Pssm-ID: 206637 [Multi-domain] Cd Length: 98 Bit Score: 127.81 E-value: 8.14e-35
|
||||||||
Cadherin_repeat | cd11304 | Cadherin tandem repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell ... |
238-332 | 1.17e-28 | ||||
Cadherin tandem repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. The cadherin repeat domains occur as tandem repeats in the extracellular regions, which are thought to mediate cell-cell contact when bound to calcium. They play numerous roles in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-, CNR-, proto-, and FAT-family cadherin, desmocollin, and desmoglein, a large variety of domain architectures with varying repeat copy numbers. Cadherin-repeat containing proteins exist as monomers, homodimers, or heterodimers. Pssm-ID: 206637 [Multi-domain] Cd Length: 98 Bit Score: 110.10 E-value: 1.17e-28
|
||||||||
CA | smart00112 | Cadherin repeats; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. ... |
150-231 | 2.95e-28 | ||||
Cadherin repeats; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium. Pssm-ID: 214520 [Multi-domain] Cd Length: 81 Bit Score: 108.59 E-value: 2.95e-28
|
||||||||
Cadherin_repeat | cd11304 | Cadherin tandem repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell ... |
23-123 | 4.82e-23 | ||||
Cadherin tandem repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. The cadherin repeat domains occur as tandem repeats in the extracellular regions, which are thought to mediate cell-cell contact when bound to calcium. They play numerous roles in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-, CNR-, proto-, and FAT-family cadherin, desmocollin, and desmoglein, a large variety of domain architectures with varying repeat copy numbers. Cadherin-repeat containing proteins exist as monomers, homodimers, or heterodimers. Pssm-ID: 206637 [Multi-domain] Cd Length: 98 Bit Score: 94.30 E-value: 4.82e-23
|
||||||||
Cadherin | pfam00028 | Cadherin domain; |
133-224 | 1.27e-22 | ||||
Cadherin domain; Pssm-ID: 394985 [Multi-domain] Cd Length: 92 Bit Score: 92.75 E-value: 1.27e-22
|
||||||||
CA | smart00112 | Cadherin repeats; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. ... |
256-334 | 2.39e-22 | ||||
Cadherin repeats; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium. Pssm-ID: 214520 [Multi-domain] Cd Length: 81 Bit Score: 91.64 E-value: 2.39e-22
|
||||||||
Cadherin_repeat | cd11304 | Cadherin tandem repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell ... |
351-433 | 4.10e-21 | ||||
Cadherin tandem repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. The cadherin repeat domains occur as tandem repeats in the extracellular regions, which are thought to mediate cell-cell contact when bound to calcium. They play numerous roles in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-, CNR-, proto-, and FAT-family cadherin, desmocollin, and desmoglein, a large variety of domain architectures with varying repeat copy numbers. Cadherin-repeat containing proteins exist as monomers, homodimers, or heterodimers. Pssm-ID: 206637 [Multi-domain] Cd Length: 98 Bit Score: 88.52 E-value: 4.10e-21
|
||||||||
CA | smart00112 | Cadherin repeats; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. ... |
39-125 | 1.95e-18 | ||||
Cadherin repeats; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium. Pssm-ID: 214520 [Multi-domain] Cd Length: 81 Bit Score: 80.47 E-value: 1.95e-18
|
||||||||
CA | smart00112 | Cadherin repeats; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. ... |
362-433 | 1.57e-16 | ||||
Cadherin repeats; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium. Pssm-ID: 214520 [Multi-domain] Cd Length: 81 Bit Score: 75.08 E-value: 1.57e-16
|
||||||||
Cadherin | pfam00028 | Cadherin domain; |
238-327 | 4.79e-16 | ||||
Cadherin domain; Pssm-ID: 394985 [Multi-domain] Cd Length: 92 Bit Score: 73.87 E-value: 4.79e-16
|
||||||||
Cadherin | pfam00028 | Cadherin domain; |
352-433 | 1.18e-15 | ||||
Cadherin domain; Pssm-ID: 394985 [Multi-domain] Cd Length: 92 Bit Score: 73.10 E-value: 1.18e-15
|
||||||||
Cadherin | pfam00028 | Cadherin domain; |
23-117 | 3.73e-12 | ||||
Cadherin domain; Pssm-ID: 394985 [Multi-domain] Cd Length: 92 Bit Score: 63.09 E-value: 3.73e-12
|
||||||||
Name | Accession | Description | Interval | E-value | ||||
Protocadherin | pfam08374 | Protocadherin; The structure of protocadherins is similar to that of classic cadherins ... |
436-650 | 5.40e-86 | ||||
Protocadherin; The structure of protocadherins is similar to that of classic cadherins (pfam00028), but particularly on the cytoplasmic domains they also have some unique features. They are expressed in a variety of organizms and are found in high concentrations in the brain where they seem to be localized mainly at cell-cell contact sites. Their expression seems to be developmentally regulated. Pssm-ID: 462451 Cd Length: 217 Bit Score: 273.15 E-value: 5.40e-86
|
||||||||
Cadherin_repeat | cd11304 | Cadherin tandem repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell ... |
133-229 | 8.14e-35 | ||||
Cadherin tandem repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. The cadherin repeat domains occur as tandem repeats in the extracellular regions, which are thought to mediate cell-cell contact when bound to calcium. They play numerous roles in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-, CNR-, proto-, and FAT-family cadherin, desmocollin, and desmoglein, a large variety of domain architectures with varying repeat copy numbers. Cadherin-repeat containing proteins exist as monomers, homodimers, or heterodimers. Pssm-ID: 206637 [Multi-domain] Cd Length: 98 Bit Score: 127.81 E-value: 8.14e-35
|
||||||||
Cadherin_repeat | cd11304 | Cadherin tandem repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell ... |
238-332 | 1.17e-28 | ||||
Cadherin tandem repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. The cadherin repeat domains occur as tandem repeats in the extracellular regions, which are thought to mediate cell-cell contact when bound to calcium. They play numerous roles in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-, CNR-, proto-, and FAT-family cadherin, desmocollin, and desmoglein, a large variety of domain architectures with varying repeat copy numbers. Cadherin-repeat containing proteins exist as monomers, homodimers, or heterodimers. Pssm-ID: 206637 [Multi-domain] Cd Length: 98 Bit Score: 110.10 E-value: 1.17e-28
|
||||||||
CA | smart00112 | Cadherin repeats; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. ... |
150-231 | 2.95e-28 | ||||
Cadherin repeats; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium. Pssm-ID: 214520 [Multi-domain] Cd Length: 81 Bit Score: 108.59 E-value: 2.95e-28
|
||||||||
Cadherin_repeat | cd11304 | Cadherin tandem repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell ... |
23-123 | 4.82e-23 | ||||
Cadherin tandem repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. The cadherin repeat domains occur as tandem repeats in the extracellular regions, which are thought to mediate cell-cell contact when bound to calcium. They play numerous roles in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-, CNR-, proto-, and FAT-family cadherin, desmocollin, and desmoglein, a large variety of domain architectures with varying repeat copy numbers. Cadherin-repeat containing proteins exist as monomers, homodimers, or heterodimers. Pssm-ID: 206637 [Multi-domain] Cd Length: 98 Bit Score: 94.30 E-value: 4.82e-23
|
||||||||
Cadherin | pfam00028 | Cadherin domain; |
133-224 | 1.27e-22 | ||||
Cadherin domain; Pssm-ID: 394985 [Multi-domain] Cd Length: 92 Bit Score: 92.75 E-value: 1.27e-22
|
||||||||
CA | smart00112 | Cadherin repeats; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. ... |
256-334 | 2.39e-22 | ||||
Cadherin repeats; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium. Pssm-ID: 214520 [Multi-domain] Cd Length: 81 Bit Score: 91.64 E-value: 2.39e-22
|
||||||||
Cadherin_repeat | cd11304 | Cadherin tandem repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell ... |
351-433 | 4.10e-21 | ||||
Cadherin tandem repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. The cadherin repeat domains occur as tandem repeats in the extracellular regions, which are thought to mediate cell-cell contact when bound to calcium. They play numerous roles in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-, CNR-, proto-, and FAT-family cadherin, desmocollin, and desmoglein, a large variety of domain architectures with varying repeat copy numbers. Cadherin-repeat containing proteins exist as monomers, homodimers, or heterodimers. Pssm-ID: 206637 [Multi-domain] Cd Length: 98 Bit Score: 88.52 E-value: 4.10e-21
|
||||||||
CA | smart00112 | Cadherin repeats; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. ... |
39-125 | 1.95e-18 | ||||
Cadherin repeats; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium. Pssm-ID: 214520 [Multi-domain] Cd Length: 81 Bit Score: 80.47 E-value: 1.95e-18
|
||||||||
CA | smart00112 | Cadherin repeats; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. ... |
362-433 | 1.57e-16 | ||||
Cadherin repeats; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium. Pssm-ID: 214520 [Multi-domain] Cd Length: 81 Bit Score: 75.08 E-value: 1.57e-16
|
||||||||
Cadherin | pfam00028 | Cadherin domain; |
238-327 | 4.79e-16 | ||||
Cadherin domain; Pssm-ID: 394985 [Multi-domain] Cd Length: 92 Bit Score: 73.87 E-value: 4.79e-16
|
||||||||
Cadherin | pfam00028 | Cadherin domain; |
352-433 | 1.18e-15 | ||||
Cadherin domain; Pssm-ID: 394985 [Multi-domain] Cd Length: 92 Bit Score: 73.10 E-value: 1.18e-15
|
||||||||
Cadherin | pfam00028 | Cadherin domain; |
23-117 | 3.73e-12 | ||||
Cadherin domain; Pssm-ID: 394985 [Multi-domain] Cd Length: 92 Bit Score: 63.09 E-value: 3.73e-12
|
||||||||
CA_like | cd00031 | Cadherin repeat-like domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell ... |
137-229 | 3.24e-03 | ||||
Cadherin repeat-like domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. The cadherin repeat domains occur as tandem repeats in the extracellular regions, which are thought to mediate cell-cell contact when bound to calcium. They play numerous roles in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-, CNR-, proto-, and FAT-family cadherin, desmocollin, and desmoglein, a large variety of domain architectures with varying repeat copy numbers. Cadherin-repeat containing proteins exist as monomers, homodimers, or heterodimers. This family also includes the cadherin-like repeats of extracellular alpha-dystroglycan. Pssm-ID: 206635 Cd Length: 98 Bit Score: 37.71 E-value: 3.24e-03
|
||||||||
Blast search parameters | ||||
|