|
Name |
Accession |
Description |
Interval |
E-value |
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
9-581 |
2.23e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 58.61 E-value: 2.23e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 9 DHDKQEAVDRCERTYQQHHEAMKTQiresllAKHALEKQQLFEAYERTHLQLRSELDKLNKEVTAVQECYLEVCREKDNL 88
Cdd:PTZ00121 1222 DAKKAEAVKKAEEAKKDAEEAKKAE------EERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEA 1295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 89 ELT--LRKTTEKEQQTQEKIKEKLIQQLEKEWQSKLDqtikAMKKKTLDcGSQTDQVTTSDVISKKEMAIMIEEQKCTIQ 166
Cdd:PTZ00121 1296 KKAeeKKKADEAKKKAEEAKKADEAKKKAEEAKKKAD----AAKKKAEE-AKKAAEAAKAEAEAAADEAEAAEEKAEAAE 1370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 167 QNLEQEKDIAiKGAMKKLEielELKHCENITKQVEIAVQNAHqrwlgELPELAEYQALVKAEQKKWEEQHEVSVNKRISF 246
Cdd:PTZ00121 1371 KKKEEAKKKA-DAAKKKAE---EKKKADEAKKKAEEDKKKAD-----ELKKAAAAKKKADEAKKKAEEKKKADEAKKKAE 1441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 247 AVSEAKEKwKSELENMRKNILPGKELEEKIHSlqKELELKNEEVPvviRAELAKARSEWNKEKQEEIHRIQEQNEQDYRQ 326
Cdd:PTZ00121 1442 EAKKADEA-KKKAEEAKKAEEAKKKAEEAKKA--DEAKKKAEEAK---KADEAKKKAEEAKKKADEAKKAAEAKKKADEA 1515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 327 FLDDHRNKINEVLAAAKedfmKQKTELLLQKETELQTCLDQSRREWTMQEAKRIQLEIYQYEEDILTVLgvllsdTQKEH 406
Cdd:PTZ00121 1516 KKAEEAKKADEAKKAEE----AKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMAL------RKAEE 1585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 407 ISDSEDKQLLEIMSTCSS-KWMSVQYFEKLKGCIQKAFQdtlpllVENADPEWKKrnMAELSKDSASQGTGQGDPGPAAG 485
Cdd:PTZ00121 1586 AKKAEEARIEEVMKLYEEeKKMKAEEAKKAEEAKIKAEE------LKKAEEEKKK--VEQLKKKEAEEKKKAEELKKAEE 1657
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 486 HHAQPLALQATEAEADKKKVLEIKDlccghcfQELEKAKQECQDLKGKLEKC----CRHLQHLERKHKAVVEKIGEENNK 561
Cdd:PTZ00121 1658 ENKIKAAEEAKKAEEDKKKAEEAKK-------AEEDEKKAAEALKKEAEEAKkaeeLKKKEAEEKKKAEELKKAEEENKI 1730
|
570 580
....*....|....*....|
gi 1034590061 562 VVEELIEENNDMKNKLEELQ 581
Cdd:PTZ00121 1731 KAEEAKKEAEEDKKKAEEAK 1750
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
59-369 |
2.54e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.07 E-value: 2.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 59 QLRSELDKLNKEvTAVQECYLEVCREKDNLELTL-----------RKTTEKEQQTQEKIKEKL---IQQLEKEWQSKLdQ 124
Cdd:TIGR02169 195 EKRQQLERLRRE-REKAERYQALLKEKREYEGYEllkekealerqKEAIERQLASLEEELEKLteeISELEKRLEEIE-Q 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 125 TIKAMKKKTLDCGSQTDQVTTSDViskKEMAIMIEEQKCTIQQNLEQEKDIAIKGAMKKLEIELELKHCENITKQVEiav 204
Cdd:TIGR02169 273 LLEELNKKIKDLGEEEQLRVKEKI---GELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIE--- 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 205 qnahqRWLGELPEL-AEYQALVKAEQKKWEEQHEVSVNKRISF----AVSEAKEKWKSELENMRKNILPGKELEEKIHSL 279
Cdd:TIGR02169 347 -----EERKRRDKLtEEYAELKEELEDLRAELEEVDKEFAETRdelkDYREKLEKLKREINELKRELDRLQEELQRLSEE 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 280 QKELELKNEevpvVIRAELAKARSEwNKEKQEEIHRIQEQNEQ------DYRQFLDDHRNKINEVlaaakEDFMKQKTEL 353
Cdd:TIGR02169 422 LADLNAAIA----GIEAKINELEEE-KEDKALEIKKQEWKLEQlaadlsKYEQELYDLKEEYDRV-----EKELSKLQRE 491
|
330
....*....|....*.
gi 1034590061 354 LLQKETELQTCLDQSR 369
Cdd:TIGR02169 492 LAEAEAQARASEERVR 507
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
31-727 |
2.96e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 48.43 E-value: 2.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 31 KTQIRESLLAKHALEKQQLFEAYERT----HLQLRSELDKLNKEVTAVQECYLEVCREKDNLELTLRKTT-------EKE 99
Cdd:pfam02463 201 KLKEQAKKALEYYQLKEKLELEEEYLlyldYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVlkenkeeEKE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 100 QQTQEKIKEKLIQQLEKEWQSKLDQTIKAMKKKTLDCGSQTDQVTTSDVIsKKEMAIMIEEQKCTIQQNLEQEKDIAIKG 179
Cdd:pfam02463 281 KKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKEL-KKEKEEIEELEKELKELEIKREAEEEEEE 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 180 AMKKLEIELELKHCENITKQVEIAVQnahqrwlgelpELAEYQALVKAEQKKWEEQHEVSVNKRISFAVSEAKEKWKSEL 259
Cdd:pfam02463 360 ELEKLQEKLEQLEEELLAKKKLESER-----------LSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEE 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 260 ENMRKNILPGKELEEKIHSLQKELELKNEEVPVVIRAELAKARSEWNKEKQEEIHRIQEQNEQDYRQFLDDHRNKINEVL 339
Cdd:pfam02463 429 LEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSG 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 340 AAAKEDFMKQKTELLLQKETELQTCL-------DQSRREWTMQEAKRIQLEIYQYEEDILTVLGVLLSDTQKEHISDSED 412
Cdd:pfam02463 509 LKVLLALIKDGVGGRIISAHGRLGDLgvavenyKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLK 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 413 KQLLEIMSTCSSKWMSVQYFEKLKGCIQKAFQDTLPLLVENADPEWKKRNMAELSKDSASQGTGQGDPGPAAGHHAQPLA 492
Cdd:pfam02463 589 LPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASL 668
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 493 LQATEAEADKKKVLEIKDlccghcfQELEKAKQECQDLKGKLEKccRHLQHLERKHKAVVEKIGEENNKVVEELIEENND 572
Cdd:pfam02463 669 SELTKELLEIQELQEKAE-------SELAKEEILRRQLEIKKKE--QREKEELKKLKLEAEELLADRVQEAQDKINEELK 739
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 573 mKNKLEELQTLCKTPPRSLSAGAIENaclpCSGGALEELRGQYIKAVKKIKcDMLRYIQESKERAAEMVKAEVLRERQET 652
Cdd:pfam02463 740 -LLKQKIDEEEEEEEKSRLKKEEKEE----EKSELSLKEKELAEEREKTEK-LKVEEEKEEKLKAQEEELRALEEELKEE 813
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034590061 653 ARKMRKYYLIcLQQILQDDGKEGAEKKIMNAASKLATMAKLLETPISSKSQSKTTQSALPLTSEMLIAVKKSKRN 727
Cdd:pfam02463 814 AELLEEEQLL-IEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDE 887
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
55-399 |
3.36e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.01 E-value: 3.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 55 RTHLQLRSELDKLNKEVTAVQECYLEVCREKDNLELTLRKTTEKEQQTQEKIKEKLIQQLEKEwQSKLDQTIKAMKKKTL 134
Cdd:COG1196 213 ERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLE-LEELELELEEAQAEEY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 135 DCGSQTDQvTTSDVISKKEMAIMIEEQkctIQQNLEQEKDIAIKGAMKKLEIELELKHCENITKQVEIAVQNAHQRWLGE 214
Cdd:COG1196 292 ELLAELAR-LEQDIARLEERRRELEER---LEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEAL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 215 LPELAEYQALVKAEQKKWEE----QHEVSVNKRISFAVSEAKEKWKSELENMRKNILpgKELEEKIHSLQKELELKNEEV 290
Cdd:COG1196 368 LEAEAELAEAEEELEELAEElleaLRAAAELAAQLEELEEAEEALLERLERLEEELE--ELEEALAELEEEEEEEEEALE 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 291 PVVIRAELAKARSEWNKEKQEEIHRIQEQNEQDYRQfLDDHRNKINEVLAAAKEdfMKQKTELLLQKETELQTcLDQSRR 370
Cdd:COG1196 446 EAAEEEAELEEEEEALLELLAELLEEAALLEAALAE-LLEELAEAAARLLLLLE--AEADYEGFLEGVKAALL-LAGLRG 521
|
330 340
....*....|....*....|....*....
gi 1034590061 371 EWtmQEAKRIQLEIYQYEEDILTVLGVLL 399
Cdd:COG1196 522 LA--GAVAVLIGVEAAYEAALEAALAAAL 548
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
9-581 |
2.23e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 58.61 E-value: 2.23e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 9 DHDKQEAVDRCERTYQQHHEAMKTQiresllAKHALEKQQLFEAYERTHLQLRSELDKLNKEVTAVQECYLEVCREKDNL 88
Cdd:PTZ00121 1222 DAKKAEAVKKAEEAKKDAEEAKKAE------EERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEA 1295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 89 ELT--LRKTTEKEQQTQEKIKEKLIQQLEKEWQSKLDqtikAMKKKTLDcGSQTDQVTTSDVISKKEMAIMIEEQKCTIQ 166
Cdd:PTZ00121 1296 KKAeeKKKADEAKKKAEEAKKADEAKKKAEEAKKKAD----AAKKKAEE-AKKAAEAAKAEAEAAADEAEAAEEKAEAAE 1370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 167 QNLEQEKDIAiKGAMKKLEielELKHCENITKQVEIAVQNAHqrwlgELPELAEYQALVKAEQKKWEEQHEVSVNKRISF 246
Cdd:PTZ00121 1371 KKKEEAKKKA-DAAKKKAE---EKKKADEAKKKAEEDKKKAD-----ELKKAAAAKKKADEAKKKAEEKKKADEAKKKAE 1441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 247 AVSEAKEKwKSELENMRKNILPGKELEEKIHSlqKELELKNEEVPvviRAELAKARSEWNKEKQEEIHRIQEQNEQDYRQ 326
Cdd:PTZ00121 1442 EAKKADEA-KKKAEEAKKAEEAKKKAEEAKKA--DEAKKKAEEAK---KADEAKKKAEEAKKKADEAKKAAEAKKKADEA 1515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 327 FLDDHRNKINEVLAAAKedfmKQKTELLLQKETELQTCLDQSRREWTMQEAKRIQLEIYQYEEDILTVLgvllsdTQKEH 406
Cdd:PTZ00121 1516 KKAEEAKKADEAKKAEE----AKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMAL------RKAEE 1585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 407 ISDSEDKQLLEIMSTCSS-KWMSVQYFEKLKGCIQKAFQdtlpllVENADPEWKKrnMAELSKDSASQGTGQGDPGPAAG 485
Cdd:PTZ00121 1586 AKKAEEARIEEVMKLYEEeKKMKAEEAKKAEEAKIKAEE------LKKAEEEKKK--VEQLKKKEAEEKKKAEELKKAEE 1657
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 486 HHAQPLALQATEAEADKKKVLEIKDlccghcfQELEKAKQECQDLKGKLEKC----CRHLQHLERKHKAVVEKIGEENNK 561
Cdd:PTZ00121 1658 ENKIKAAEEAKKAEEDKKKAEEAKK-------AEEDEKKAAEALKKEAEEAKkaeeLKKKEAEEKKKAEELKKAEEENKI 1730
|
570 580
....*....|....*....|
gi 1034590061 562 VVEELIEENNDMKNKLEELQ 581
Cdd:PTZ00121 1731 KAEEAKKEAEEDKKKAEEAK 1750
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
12-390 |
2.27e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 58.61 E-value: 2.27e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 12 KQEAVDRCERTYQQHHEAMKTQiresLLAKHALEKQQLFEAYERTHLQLRS-ELDKLNKEVTAVQECylevcreKDNLEL 90
Cdd:PTZ00121 1426 KAEEKKKADEAKKKAEEAKKAD----EAKKKAEEAKKAEEAKKKAEEAKKAdEAKKKAEEAKKADEA-------KKKAEE 1494
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 91 TLRKTTEKEQQTQEKIKEKLIQQLEKewQSKLDQTIKAMKKKTLDCGSQTDQVTTSDVISKKEMAIMIEEQKCTIQQNLE 170
Cdd:PTZ00121 1495 AKKKADEAKKAAEAKKKADEAKKAEE--AKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKA 1572
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 171 QEKDiaiKGAMKKLEIelelkhcenitkqveiaVQNAHQRWLGELPELAEYQALVKAEQKKWEEQHEVsvnkrisfavsE 250
Cdd:PTZ00121 1573 EEDK---NMALRKAEE-----------------AKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKI-----------K 1621
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 251 AKEKWKSELENMRKNILPGKELEEKihslQKELELKNEEVPVVIRAELAKARSEWNKEKQEEIHRIQEQNEQDYRQFL-- 328
Cdd:PTZ00121 1622 AEELKKAEEEKKKVEQLKKKEAEEK----KKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKke 1697
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1034590061 329 DDHRNKINEVLAAAKEDfmKQKTELLLQKETELQTCLDQSRREwtMQEAKRIQLEIYQYEED 390
Cdd:PTZ00121 1698 AEEAKKAEELKKKEAEE--KKKAEELKKAEEENKIKAEEAKKE--AEEDKKKAEEAKKDEEE 1755
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
59-369 |
2.54e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.07 E-value: 2.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 59 QLRSELDKLNKEvTAVQECYLEVCREKDNLELTL-----------RKTTEKEQQTQEKIKEKL---IQQLEKEWQSKLdQ 124
Cdd:TIGR02169 195 EKRQQLERLRRE-REKAERYQALLKEKREYEGYEllkekealerqKEAIERQLASLEEELEKLteeISELEKRLEEIE-Q 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 125 TIKAMKKKTLDCGSQTDQVTTSDViskKEMAIMIEEQKCTIQQNLEQEKDIAIKGAMKKLEIELELKHCENITKQVEiav 204
Cdd:TIGR02169 273 LLEELNKKIKDLGEEEQLRVKEKI---GELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIE--- 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 205 qnahqRWLGELPEL-AEYQALVKAEQKKWEEQHEVSVNKRISF----AVSEAKEKWKSELENMRKNILPGKELEEKIHSL 279
Cdd:TIGR02169 347 -----EERKRRDKLtEEYAELKEELEDLRAELEEVDKEFAETRdelkDYREKLEKLKREINELKRELDRLQEELQRLSEE 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 280 QKELELKNEevpvVIRAELAKARSEwNKEKQEEIHRIQEQNEQ------DYRQFLDDHRNKINEVlaaakEDFMKQKTEL 353
Cdd:TIGR02169 422 LADLNAAIA----GIEAKINELEEE-KEDKALEIKKQEWKLEQlaadlsKYEQELYDLKEEYDRV-----EKELSKLQRE 491
|
330
....*....|....*.
gi 1034590061 354 LLQKETELQTCLDQSR 369
Cdd:TIGR02169 492 LAEAEAQARASEERVR 507
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
31-727 |
2.96e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 48.43 E-value: 2.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 31 KTQIRESLLAKHALEKQQLFEAYERT----HLQLRSELDKLNKEVTAVQECYLEVCREKDNLELTLRKTT-------EKE 99
Cdd:pfam02463 201 KLKEQAKKALEYYQLKEKLELEEEYLlyldYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVlkenkeeEKE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 100 QQTQEKIKEKLIQQLEKEWQSKLDQTIKAMKKKTLDCGSQTDQVTTSDVIsKKEMAIMIEEQKCTIQQNLEQEKDIAIKG 179
Cdd:pfam02463 281 KKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKEL-KKEKEEIEELEKELKELEIKREAEEEEEE 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 180 AMKKLEIELELKHCENITKQVEIAVQnahqrwlgelpELAEYQALVKAEQKKWEEQHEVSVNKRISFAVSEAKEKWKSEL 259
Cdd:pfam02463 360 ELEKLQEKLEQLEEELLAKKKLESER-----------LSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEE 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 260 ENMRKNILPGKELEEKIHSLQKELELKNEEVPVVIRAELAKARSEWNKEKQEEIHRIQEQNEQDYRQFLDDHRNKINEVL 339
Cdd:pfam02463 429 LEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSG 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 340 AAAKEDFMKQKTELLLQKETELQTCL-------DQSRREWTMQEAKRIQLEIYQYEEDILTVLGVLLSDTQKEHISDSED 412
Cdd:pfam02463 509 LKVLLALIKDGVGGRIISAHGRLGDLgvavenyKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLK 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 413 KQLLEIMSTCSSKWMSVQYFEKLKGCIQKAFQDTLPLLVENADPEWKKRNMAELSKDSASQGTGQGDPGPAAGHHAQPLA 492
Cdd:pfam02463 589 LPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASL 668
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 493 LQATEAEADKKKVLEIKDlccghcfQELEKAKQECQDLKGKLEKccRHLQHLERKHKAVVEKIGEENNKVVEELIEENND 572
Cdd:pfam02463 669 SELTKELLEIQELQEKAE-------SELAKEEILRRQLEIKKKE--QREKEELKKLKLEAEELLADRVQEAQDKINEELK 739
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 573 mKNKLEELQTLCKTPPRSLSAGAIENaclpCSGGALEELRGQYIKAVKKIKcDMLRYIQESKERAAEMVKAEVLRERQET 652
Cdd:pfam02463 740 -LLKQKIDEEEEEEEKSRLKKEEKEE----EKSELSLKEKELAEEREKTEK-LKVEEEKEEKLKAQEEELRALEEELKEE 813
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034590061 653 ARKMRKYYLIcLQQILQDDGKEGAEKKIMNAASKLATMAKLLETPISSKSQSKTTQSALPLTSEMLIAVKKSKRN 727
Cdd:pfam02463 814 AELLEEEQLL-IEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDE 887
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
55-399 |
3.36e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.01 E-value: 3.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 55 RTHLQLRSELDKLNKEVTAVQECYLEVCREKDNLELTLRKTTEKEQQTQEKIKEKLIQQLEKEwQSKLDQTIKAMKKKTL 134
Cdd:COG1196 213 ERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLE-LEELELELEEAQAEEY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 135 DCGSQTDQvTTSDVISKKEMAIMIEEQkctIQQNLEQEKDIAIKGAMKKLEIELELKHCENITKQVEIAVQNAHQRWLGE 214
Cdd:COG1196 292 ELLAELAR-LEQDIARLEERRRELEER---LEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEAL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 215 LPELAEYQALVKAEQKKWEE----QHEVSVNKRISFAVSEAKEKWKSELENMRKNILpgKELEEKIHSLQKELELKNEEV 290
Cdd:COG1196 368 LEAEAELAEAEEELEELAEElleaLRAAAELAAQLEELEEAEEALLERLERLEEELE--ELEEALAELEEEEEEEEEALE 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 291 PVVIRAELAKARSEWNKEKQEEIHRIQEQNEQDYRQfLDDHRNKINEVLAAAKEdfMKQKTELLLQKETELQTcLDQSRR 370
Cdd:COG1196 446 EAAEEEAELEEEEEALLELLAELLEEAALLEAALAE-LLEELAEAAARLLLLLE--AEADYEGFLEGVKAALL-LAGLRG 521
|
330 340
....*....|....*....|....*....
gi 1034590061 371 EWtmQEAKRIQLEIYQYEEDILTVLGVLL 399
Cdd:COG1196 522 LA--GAVAVLIGVEAAYEAALEAALAAAL 548
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
182-389 |
6.94e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.98 E-value: 6.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 182 KKLEIEL-----ELKHCENITKQVEIAVQNAHQRwLGELPelAEYQALVKAEQKKWEEQHEVSVnkRISfAVSEAKEKWK 256
Cdd:TIGR02169 684 EGLKRELsslqsELRRIENRLDELSQELSDASRK-IGEIE--KEIEQLEQEEEKLKERLEELEE--DLS-SLEQEIENVK 757
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 257 SELENMRKNIlpgKELEEKIHSLQKELE-----LKNEEVPvVIRAELakarsewnkEKQEEIHRIQEQNEQDYRQFLDDh 331
Cdd:TIGR02169 758 SELKELEARI---EELEEDLHKLEEALNdlearLSHSRIP-EIQAEL---------SKLEEEVSRIEARLREIEQKLNR- 823
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1034590061 332 RNKINEVLAAAKEDFMKQKTELLLQKETELQTC-LDQSRREWTMQEAKRIQLEIYQYEE 389
Cdd:TIGR02169 824 LTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIeNLNGKKEELEEELEELEAALRDLES 882
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
88-390 |
1.67e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.50 E-value: 1.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 88 LELTLRKTTEKEQQTQEKIKEKLIQQLEKEWQSKLDQTIKAMKKKTLDCGSQTDQVTTSDVISKKEMAIMIEEQKCTIQQ 167
Cdd:pfam17380 275 LHIVQHQKAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIR 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 168 NLEQEKDIAikgAMKKLEIELELKHCENItKQVEIAVQNAHQRWLGELPELAEYQALVKAEQKKWEEQHEVSvnKRISFA 247
Cdd:pfam17380 355 QEERKRELE---RIRQEEIAMEISRMREL-ERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEM--EQIRAE 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 248 VSEAKEKWKSELENMRKNILPGKELEEKIHSLQKELELKNEEvpvviraELAKARSEWNKEKQEEiHRIQEQNEQDYRQF 327
Cdd:pfam17380 429 QEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEE-------ERKRKKLELEKEKRDR-KRAEEQRRKILEKE 500
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034590061 328 LDDHRNKINEVLAAAK--EDFMKQKTELLLQKEtELQTCLDQSRREWTMQEAKRIQLEIYQYEED 390
Cdd:pfam17380 501 LEERKQAMIEEERKRKllEKEMEERQKAIYEEE-RRREAEEERRKQQEMEERRRIQEQMRKATEE 564
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
2-319 |
6.24e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.96 E-value: 6.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 2 RQMVQDFDHDKQEAVdRCERTYQQHHEAMKTQIRESLLAKHA-LEKQ-QLFEAYERTHLQLRSELDKLNKE-------VT 72
Cdd:pfam17380 287 RQQQEKFEKMEQERL-RQEKEEKAREVERRRKLEEAEKARQAeMDRQaAIYAEQERMAMERERELERIRQEerkreleRI 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 73 AVQECYLEVCREKDNLELTLRKTTEKEQQTQEKIKEKLIQQLEKEWQSKLDQTIKAMKKktldcgsqtdqvttsdVISKK 152
Cdd:pfam17380 366 RQEEIAMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQ----------------IRAEQ 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 153 EMAIMIEEQKctiqqnLEQEKDIAIKgamKKLEIELELKHcenitkQVEIAVQNAHQRWLGELPELAEyqalvKAEQKKW 232
Cdd:pfam17380 430 EEARQREVRR------LEEERAREME---RVRLEEQERQQ------QVERLRQQEEERKRKKLELEKE-----KRDRKRA 489
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 233 EEQHEVSVNKrisfavsEAKEKWKSELENMRKNILPGKELEEKIHSLQKELELKneevpvviraelaKARSEWNKEKQ-E 311
Cdd:pfam17380 490 EEQRRKILEK-------ELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRR-------------EAEEERRKQQEmE 549
|
....*...
gi 1034590061 312 EIHRIQEQ 319
Cdd:pfam17380 550 ERRRIQEQ 557
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
44-371 |
7.97e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.51 E-value: 7.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 44 LEKQ-QLFEAYERTHLQLRS-ELDKLNKEVTAVQECYLEVCREKDNLELTLRKTTEKEQQTQEKikeklIQQLEKEwQSK 121
Cdd:TIGR02168 205 LERQaEKAERYKELKAELRElELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEK-----LEELRLE-VSE 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 122 LDQTIKAMKKKTLDCGSQtdqvttsdvISKKEMAIMI-EEQKCTIQQNLEQEKDIAIKGAMKKLEIELELKHCENITKQV 200
Cdd:TIGR02168 279 LEEEIEELQKELYALANE---------ISRLEQQKQIlRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEEL 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 201 EiavqnahqrwlgelPELAEYQALVKAEQKKWEEQHevsvnkrisfavsEAKEKWKSELENMRKNIlpgKELEEKIHSLQ 280
Cdd:TIGR02168 350 K--------------EELESLEAELEELEAELEELE-------------SRLEELEEQLETLRSKV---AQLELQIASLN 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 281 KELELKNEEVpvvirAELAKARSEWNKEKQEEIHRIQEQNEQDYRQFLDDHRNKINEvlAAAKEDFMKQKTELLLQKETE 360
Cdd:TIGR02168 400 NEIERLEARL-----ERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEE--LQEELERLEEALEELREELEE 472
|
330
....*....|.
gi 1034590061 361 LQTCLDQSRRE 371
Cdd:TIGR02168 473 AEQALDAAERE 483
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
83-731 |
1.36e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.04 E-value: 1.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 83 REKDNLELTLRKTTEKEQQTQEKIKEKLIQQLEKEWQSKLDQTIKAMKKKTLDCgsqtdqvttsdviskKEMAIMIEEQK 162
Cdd:pfam02463 169 RKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELE---------------EEYLLYLDYLK 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 163 CTIQQNLEQEKDIAIKGAMKKLEIELELKHCENITKQVEIAVQNAHQRWLGElpELAEYQALVKAEQKKWEEQHEVSVNK 242
Cdd:pfam02463 234 LNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQE--EELKLLAKEEEELKSELLKLERRKVD 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 243 risfavseAKEKWKSELENMRKNILPGKELEEKIHSLQKELELKneevpvviraelaKARSEWNKEKQEEIHRIQEQNEQ 322
Cdd:pfam02463 312 --------DEEKLKESEKEKKKAEKELKKEKEEIEELEKELKEL-------------EIKREAEEEEEEELEKLQEKLEQ 370
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 323 DYRQFLDDHRNKINEVLAAAKEDFMKQKTELLLQKETELQTCLDQSRREWTMQEAKRIQLEIYQYEEDILTVLGVLLSDT 402
Cdd:pfam02463 371 LEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEK 450
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 403 QKEHISDSEDKQLLEIMSTCSSKWMSVQYFEKLkgcIQKAFQDTLPLLVENADPEWKKRNMAELSKDSASQGTGQGDPGP 482
Cdd:pfam02463 451 EELEKQELKLLKDELELKKSEDLLKETQLVKLQ---EQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISA 527
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 483 AAGHHAQPLALQ--------ATEAEADKKKVLEIKDLCCGHCFQELEKAKQECQDLKGKLEKCCRHLQHLERKHKAVVEK 554
Cdd:pfam02463 528 HGRLGDLGVAVEnykvaistAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQ 607
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 555 IGEENNKVVEELIEENNDMKNKLEELQTLCKTPPRSLSAGAIENaclpcSGGALEELRGQYIKAVKKIKCDMLRYIQESK 634
Cdd:pfam02463 608 LDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKG-----VSLEEGLAEKSEVKASLSELTKELLEIQELQ 682
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 635 ERAAEMVKAEVLRERQETARKMRKYYLICLQQiLQDDGKEGAEKKIMNAASKLATMAKLLETPISSKSQ--SKTTQSALP 712
Cdd:pfam02463 683 EKAESELAKEEILRRQLEIKKKEQREKEELKK-LKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEeeEKSRLKKEE 761
|
650
....*....|....*....
gi 1034590061 713 LTSEMLIAVKKSKRNDVNQ 731
Cdd:pfam02463 762 KEEEKSELSLKEKELAEER 780
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
57-383 |
1.62e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 42.65 E-value: 1.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 57 HLQLRSELDKLNKEVTAVQECYLEVCRE----KDNLELTLRKTTEKEQQTQEKiKEKLIQQLEK-EWQSKLDQTIKAMKK 131
Cdd:TIGR00618 189 KKSLHGKAELLTLRSQLLTLCTPCMPDTyherKQVLEKELKHLREALQQTQQS-HAYLTQKREAqEEQLKKQQLLKQLRA 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 132 KtldcgsqtdqvttsdviskkemaimieEQKCTIQQNLEQEKDIAIKGAMKKLEIELELKHCENITKQVEIAVQNAHQRW 211
Cdd:TIGR00618 268 R---------------------------IEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKM 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 212 LGELPELAEYQALVKAEQKKWEEQHEVSVNKRISFAVSEAKEKWKSELENMRKNilpgKELEEKIHSLQKELELKNEEVP 291
Cdd:TIGR00618 321 RSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQ----HTLTQHIHTLQQQKTTLTQKLQ 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 292 V------VIRAELAKARSEWNKEKQEEIH----RIQEQNEQDYRQFLDDHRNKINEVLAAAKEDF--MKQKTELLLQKET 359
Cdd:TIGR00618 397 SlckeldILQREQATIDTRTSAFRDLQGQlahaKKQQELQQRYAELCAAAITCTAQCEKLEKIHLqeSAQSLKEREQQLQ 476
|
330 340
....*....|....*....|....
gi 1034590061 360 ELQTCLDQSRREWTMQEAKRIQLE 383
Cdd:TIGR00618 477 TKEQIHLQETRKKAVVLARLLELQ 500
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
59-253 |
1.89e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.74 E-value: 1.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 59 QLRSELDKLNKEVTAVQEcylevcrEKDNLELTLRKTTEKEQQTQEKIKEKliQQLEKEWQSKLDQTIKAMKKKtldcGS 138
Cdd:COG3883 34 AAQAELDALQAELEELNE-------EYNELQAELEALQAEIDKLQAEIAEA--EAEIEERREELGERARALYRS----GG 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 139 QTDQVTT-------SDVISKKEM--------AIMIEEQKcTIQQNLEQEKdiaiKGAMKKLEiELELKHCENITKQVEI- 202
Cdd:COG3883 101 SVSYLDVllgsesfSDFLDRLSAlskiadadADLLEELK-ADKAELEAKK----AELEAKLA-ELEALKAELEAAKAELe 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1034590061 203 AVQNAHQRWLGEL-PELAEYQALVKAEQKKWEEQHEVSVNKRISFAVSEAKE 253
Cdd:COG3883 175 AQQAEQEALLAQLsAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAA 226
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
166-425 |
2.79e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.97 E-value: 2.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 166 QQNLEQEKDIA--IKGAMKKLEIELE----LKHCENITKQVEIAVqnahqrWLGELPELAEYQALVKAEQKKWEEQHEvs 239
Cdd:TIGR02168 185 RENLDRLEDILneLERQLKSLERQAEkaerYKELKAELRELELAL------LVLRLEELREELEELQEELKEAEEELE-- 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 240 vnkrisfAVSEAKEKWKSELENMRKNILpgkELEEKIHSLQKEL-ELKNEEVPVVIRAELAKARSEWNKEKQEEIHRIQE 318
Cdd:TIGR02168 257 -------ELTAELQELEEKLEELRLEVS---ELEEEIEELQKELyALANEISRLEQQKQILRERLANLERQLEELEAQLE 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 319 QNEQ---DYRQFLDDHRNKINEVLA-----AAKEDFMKQKTELLLQKETELQTCLDQSRREW--TMQEAKRIQLEIYQYE 388
Cdd:TIGR02168 327 ELESkldELAEELAELEEKLEELKEeleslEAELEELEAELEELESRLEELEEQLETLRSKVaqLELQIASLNNEIERLE 406
|
250 260 270
....*....|....*....|....*....|....*....
gi 1034590061 389 EDI--LTVLGVLLSDTQKEHISDSEDKQLLEIMSTCSSK 425
Cdd:TIGR02168 407 ARLerLEDRRERLQQEIEELLKKLEEAELKELQAELEEL 445
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
100-371 |
3.22e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 3.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 100 QQTQEKI--KEKLIQQLEKEWQsKLDQTIKAMKKktldcgsQTDQVttsdviskkemaimiEEQKCTIQQNLE-QEKDIA 176
Cdd:COG4913 606 FDNRAKLaaLEAELAELEEELA-EAEERLEALEA-------ELDAL---------------QERREALQRLAEySWDEID 662
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 177 IKGAMKKL-EIELELKHCEN-------ITKQVEiAVQNAHQRWLGELPELAEYQALVKAEQKKWEEQHEvSVNKRISFAV 248
Cdd:COG4913 663 VASAEREIaELEAELERLDAssddlaaLEEQLE-ELEAELEELEEELDELKGEIGRLEKELEQAEEELD-ELQDRLEAAE 740
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 249 SEAKEKWKSELENMRKNILPGKELEEKIHSLQKELELKNEEVpVVIRAELAKARSEWNKEKQEEIHRIQEQNEqDYRQFL 328
Cdd:COG4913 741 DLARLELRALLEERFAAALGDAVERELRENLEERIDALRARL-NRAEEELERAMRAFNREWPAETADLDADLE-SLPEYL 818
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 1034590061 329 DDHRNKINEVLAAAKEDFMKQKTELLLQKETELQTCLDQSRRE 371
Cdd:COG4913 819 ALLDRLEEDGLPEYEERFKELLNENSIEFVADLLSKLRRAIRE 861
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
248-383 |
3.90e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.92 E-value: 3.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 248 VSEAKEKwksELENMRKNILPGKELEEKIHSLQKELELKNEevpvviraeLAKARSEWNKEKQEEIHRIQEQNE--QDYR 325
Cdd:PRK12704 28 IAEAKIK---EAEEEAKRILEEAKKEAEAIKKEALLEAKEE---------IHKLRNEFEKELRERRNELQKLEKrlLQKE 95
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1034590061 326 QFLDDHRNKIN--EVLAAAKEDFMKQKTELLLQKETELQTCLDQSRRE------WTMQEAKRIQLE 383
Cdd:PRK12704 96 ENLDRKLELLEkrEEELEKKEKELEQKQQELEKKEEELEELIEEQLQElerisgLTAEEAKEILLE 161
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
6-322 |
4.66e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 41.22 E-value: 4.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 6 QDFDHDKQEAVDRCERTYQqHHEAMKTQIRESLLakhaLEKQQLFEAYERthlQLrSELDKLNKEVTAVQEcyleVCREK 85
Cdd:COG5022 838 VEFSLKAEVLIQKFGRSLK-AKKRFSLLKKETIY----LQSAQRVELAER---QL-QELKIDVKSISSLKL----VNLEL 904
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 86 DNLELTLRKTTEKEQQTQEKIKEKLIQQLEkewqskldqtiKAMKKKTLDCGSQTDQVTTSDVISkkemaimIEEQKCTI 165
Cdd:COG5022 905 ESEIIELKKSLSSDLIENLEFKTELIARLK-----------KLLNNIDLEEGPSIEYVKLPELNK-------LHEVESKL 966
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 166 QQNLEQEKDIAIKgaMKKLEIELeLKHCENITKqveiavqnaHQRWLGELpeLAEYQALVKAEQKKWEEQHEVSV---NK 242
Cdd:COG5022 967 KETSEEYEDLLKK--STILVREG-NKANSELKN---------FKKELAEL--SKQYGALQESTKQLKELPVEVAElqsAS 1032
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 243 RISFAVSEAKEKWKSELENMRKNILPGKELEEKIhslqKELELKNEEvPVVIRAELAKARSEWNKEKQEEIHRIQEQNEQ 322
Cdd:COG5022 1033 KIISSESTELSILKPLQKLKGLLLLENNQLQARY----KALKLRREN-SLLDDKQLYQLESTENLLKTINVKDLEVTNRN 1107
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
11-583 |
5.24e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 40.86 E-value: 5.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 11 DKQEAVDRCERTYQQHHEAMKTQIreSLLAKHALEKQQLFEAYERTHLQLRSELDKLNKEVTAVQECYLEVCREKDNLEL 90
Cdd:pfam05483 219 EDHEKIQHLEEEYKKEINDKEKQV--SLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTK 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 91 TLRK---------TTEKEQQTQEKIKEKLIQQLEKEWQSKLDQTIKAmkkktldcgsqtdQVTTSDVISKKEMAI-MIEE 160
Cdd:pfam05483 297 ELEDikmslqrsmSTQKALEEDLQIATKTICQLTEEKEAQMEELNKA-------------KAAHSFVVTEFEATTcSLEE 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 161 QKCTIQQNLEQEKDiaikgAMKKLEIELELK--HCENITKqveiaVQNAHQRWLGELPE-LAEYQALVKAEQKKWEEQHE 237
Cdd:pfam05483 364 LLRTEQQRLEKNED-----QLKIITMELQKKssELEEMTK-----FKNNKEVELEELKKiLAEDEKLLDEKKQFEKIAEE 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 238 VSVNKRISFAVSEAKEKWKSELENMRKNILPGKELEEK-IHSLQKELE---LKNEEVPvviraelakarSEWNKEKQEEI 313
Cdd:pfam05483 434 LKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKeVEDLKTELEkekLKNIELT-----------AHCDKLLLENK 502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 314 HRIQEQNeqDYRQFLDDHRNKINEvlAAAKEDFMKQKTELLLQKETELQTCLDQSRREWtMQEAKRIQLEIYQYEEDILT 393
Cdd:pfam05483 503 ELTQEAS--DMTLELKKHQEDIIN--CKKQEERMLKQIENLEEKEMNLRDELESVREEF-IQKGDEVKCKLDKSEENARS 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 394 VLGVLLSDTQKEHISDSEDKQLLEIMSTCSskwmsvQYFEKLKGcIQKAFQDTLPLLVENADPEWKKRNMAELSKDSASQ 473
Cdd:pfam05483 578 IEYEVLKKEKQMKILENKCNNLKKQIENKN------KNIEELHQ-ENKALKKKGSAENKQLNAYEIKVNKLELELASAKQ 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034590061 474 GTGqgdpgpaaghhaqplalqatEAEADKKKVLEIKDLCCGHCFQELEKAK---QECQDLKGKLEKCCrhlQHLERKHKA 550
Cdd:pfam05483 651 KFE--------------------EIIDNYQKEIEDKKISEEKLLEEVEKAKaiaDEAVKLQKEIDKRC---QHKIAEMVA 707
|
570 580 590
....*....|....*....|....*....|...
gi 1034590061 551 VVEKIGEENNKVVEELIEENNDMKNKLEELQTL 583
Cdd:pfam05483 708 LMEKHKHQYDKIIEERDSELGLYKNKEQEQSSA 740
|
|
| |
